data_AP0
# 
_chem_comp.id                                    AP0 
_chem_comp.name                                  "ACETYL PYRIDINE ADENINE DINUCLEOTIDE, REDUCED" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H30 N6 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-08-09 
_chem_comp.pdbx_modified_date                    2023-09-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        664.453 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AP0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2A94 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AP0 O7N    O7N    O 0 1 N N N 24.925 23.248 6.442  8.247  -3.917 -2.730 O7N    AP0 1  
AP0 C7N    C7N    C 0 1 N N N 25.385 22.300 7.333  8.809  -2.840 -2.755 C7N    AP0 2  
AP0 C8N    C8N    C 0 1 N N N 24.846 22.349 8.750  10.028 -2.645 -3.619 C8N    AP0 3  
AP0 C3N    C3N    C 0 1 N N N 26.379 21.269 6.912  8.319  -1.776 -1.985 C3N    AP0 4  
AP0 C4N    C4N    C 0 1 N N N 26.866 21.231 5.582  9.024  -0.450 -2.026 C4N    AP0 5  
AP0 C5N    C5N    C 0 1 N N N 27.862 20.299 5.272  8.151  0.637  -1.467 C5N    AP0 6  
AP0 C6N    C6N    C 0 1 N N N 28.238 19.502 6.333  7.088  0.369  -0.743 C6N    AP0 7  
AP0 C2N    C2N    C 0 1 N N N 26.877 20.370 7.870  7.218  -1.961 -1.222 C2N    AP0 8  
AP0 N1N    NN1    N 0 1 N N N 27.827 19.426 7.589  6.721  -0.941 -0.468 N1N    AP0 9  
AP0 C1D    C1D    C 0 1 N N R 28.313 18.570 8.597  5.796  -1.226 0.632  C1D    AP0 10 
AP0 C2D    C2D    C 0 1 N N R 28.467 17.198 8.023  6.432  -0.843 1.993  C2D    AP0 11 
AP0 O2D    O2D    O 0 1 N N N 27.240 16.525 7.912  7.220  -1.918 2.508  O2D    AP0 12 
AP0 C3D    C3D    C 0 1 N N S 29.411 16.680 9.052  5.184  -0.599 2.876  C3D    AP0 13 
AP0 O3D    O3D    O 0 1 N N N 28.599 16.343 10.205 4.892  -1.758 3.660  O3D    AP0 14 
AP0 O4D    O4D    O 0 1 N N N 29.614 19.012 8.891  4.633  -0.374 0.552  O4D    AP0 15 
AP0 C4D    C4D    C 0 1 N N R 30.315 17.884 9.374  4.052  -0.333 1.866  C4D    AP0 16 
AP0 C5D    C5D    C 0 1 N N N 31.731 17.955 8.785  3.441  1.046  2.121  C5D    AP0 17 
AP0 O5D    O5D    O 0 1 N N N 31.768 17.848 7.375  2.318  1.237  1.258  O5D    AP0 18 
AP0 PN     PN     P 0 1 N N N 33.166 17.652 6.671  1.432  2.582  1.255  PN     AP0 19 
AP0 O1N    O1N    O 0 1 N N N 32.922 17.543 5.205  0.937  2.849  2.624  O1N    AP0 20 
AP0 O2N    O2N    O 0 1 N N N 34.201 18.579 7.179  2.336  3.819  0.761  O2N    AP0 21 
AP0 O3     O3     O 0 1 N N N 33.473 16.154 7.212  0.182  2.398  0.258  O3     AP0 22 
AP0 PA     PA     P 0 1 N N N 34.889 15.427 7.425  -1.197 3.199  0.035  PA     AP0 23 
AP0 O1A    O1A    O 0 1 N N N 34.574 13.953 7.656  -1.753 3.600  1.347  O1A    AP0 24 
AP0 O2A    O2A    O 0 1 N N N 35.896 15.743 6.363  -0.918 4.512  -0.853 O2A    AP0 25 
AP0 O5B    O5B    O 0 1 N N N 35.427 16.071 8.800  -2.251 2.250  -0.727 O5B    AP0 26 
AP0 C5B    C5B    C 0 1 N N N 34.933 15.709 10.067 -3.604 2.635  -0.979 C5B    AP0 27 
AP0 C4B    C4B    C 0 1 N N R 36.149 15.619 11.001 -4.326 1.507  -1.718 C4B    AP0 28 
AP0 O4B    O4B    O 0 1 N N N 35.699 15.482 12.328 -4.447 0.359  -0.860 O4B    AP0 29 
AP0 C1B    C1B    C 0 1 N N R 36.731 14.743 12.985 -5.701 -0.279 -1.184 C1B    AP0 30 
AP0 C2B    C2B    C 0 1 N N R 37.055 13.627 12.003 -6.668 0.912  -1.399 C2B    AP0 31 
AP0 O2B    O2B    O 0 1 N N N 38.260 12.945 12.316 -7.753 0.541  -2.252 O2B    AP0 32 
AP0 C3B    C3B    C 0 1 N N S 37.084 14.432 10.701 -5.754 1.953  -2.090 C3B    AP0 33 
AP0 O3B    O3B    O 0 1 N N N 38.388 14.867 10.375 -5.936 1.916  -3.506 O3B    AP0 34 
AP0 N9A    N9A    N 0 1 Y N N 36.300 14.327 14.307 -6.154 -1.119 -0.072 N9A    AP0 35 
AP0 C8A    C8A    C 0 1 Y N N 35.569 13.222 14.697 -5.805 -0.980 1.238  C8A    AP0 36 
AP0 N7A    N7A    N 0 1 Y N N 35.397 13.286 16.039 -6.391 -1.895 1.954  N7A    AP0 37 
AP0 C5A    C5A    C 0 1 Y N N 36.013 14.410 16.505 -7.151 -2.678 1.151  C5A    AP0 38 
AP0 C6A    C6A    C 0 1 Y N N 36.170 14.969 17.770 -7.985 -3.790 1.356  C6A    AP0 39 
AP0 N6A    N6A    N 0 1 N N N 35.704 14.369 18.874 -8.164 -4.315 2.624  N6A    AP0 40 
AP0 C4A    C4A    C 0 1 Y N N 36.586 15.050 15.421 -7.013 -2.185 -0.158 C4A    AP0 41 
AP0 N3A    N3A    N 0 1 Y N N 37.280 16.205 15.556 -7.672 -2.782 -1.146 N3A    AP0 42 
AP0 C2A    C2A    C 0 1 Y N N 37.408 16.762 16.799 -8.446 -3.819 -0.905 C2A    AP0 43 
AP0 N1A    N1A    N 0 1 Y N N 36.874 16.149 17.907 -8.597 -4.326 0.305  N1A    AP0 44 
AP0 H81    H81    H 0 1 N N N 24.133 23.182 8.843  10.254 -3.574 -4.144 H81    AP0 45 
AP0 H82    H82    H 0 1 N N N 24.336 21.402 8.981  9.836  -1.855 -4.346 H82    AP0 46 
AP0 H83    H83    H 0 1 N N N 25.678 22.498 9.454  10.876 -2.366 -2.994 H83    AP0 47 
AP0 H41    H41    H 0 1 N N N 26.008 21.023 4.926  9.940  -0.512 -1.438 H41    AP0 48 
AP0 H42    H42    H 0 1 N N N 27.269 22.228 5.353  9.277  -0.211 -3.059 H42    AP0 49 
AP0 H5     H5     H 0 1 N N N 28.298 20.211 4.288  8.405  1.668  -1.665 H5     AP0 50 
AP0 H6     H6     H 0 1 N N N 29.023 18.801 6.091  6.489  1.181  -0.357 H6     AP0 51 
AP0 H2     H2     H 0 1 N N N 26.491 20.427 8.877  6.731  -2.925 -1.208 H2     AP0 52 
AP0 "H1'"  "H1'"  H 0 1 N N N 27.663 18.556 9.484  5.506  -2.277 0.626  "H1'"  AP0 53 
AP0 H14    H14    H 0 1 N N N 28.974 17.258 7.049  7.028  0.065  1.902  H14    AP0 54 
AP0 H15    H15    H 0 1 N N N 27.384 15.661 7.544  7.638  -1.727 3.359  H15    AP0 55 
AP0 H12    H12    H 0 1 N N N 29.998 15.827 8.682  5.336  0.267  3.520  H12    AP0 56 
AP0 H13    H13    H 0 1 N N N 29.155 16.005 10.897 5.598  -2.006 4.273  H13    AP0 57 
AP0 "H4'"  "H4'"  H 0 1 N N N 30.404 17.952 10.468 3.285  -1.102 1.956  "H4'"  AP0 58 
AP0 "H5'1" "H5'1" H 0 0 N N N 32.178 18.918 9.072  3.116  1.113  3.159  "H5'1" AP0 59 
AP0 "H5'2" "H5'2" H 0 0 N N N 32.326 17.133 9.211  4.186  1.817  1.923  "H5'2" AP0 60 
AP0 HO2    HO2    H 0 1 N N N 34.614 19.025 6.449  2.695  3.712  -0.131 HO2    AP0 61 
AP0 H1     H1     H 0 1 N N N 36.206 14.936 5.970  -0.552 4.325  -1.728 H1     AP0 62 
AP0 H11    H11    H 0 1 N N N 34.229 16.471 10.432 -4.109 2.831  -0.033 H11    AP0 63 
AP0 H12X   H12X   H 0 0 N N N 34.423 14.736 10.012 -3.618 3.537  -1.591 H12X   AP0 64 
AP0 H3     H3     H 0 1 N N N 36.731 16.547 10.897 -3.773 1.240  -2.618 H3     AP0 65 
AP0 H4     H4     H 0 1 N N N 37.624 15.378 13.085 -5.607 -0.867 -2.097 H4     AP0 66 
AP0 "H2'"  "H2'"  H 0 1 N N N 36.211 12.922 11.969 -7.038 1.290  -0.445 "H2'"  AP0 67 
AP0 H8     H8     H 0 1 N N N 38.414 12.262 11.674 -8.386 1.253  -2.416 H8     AP0 68 
AP0 "H3'"  "H3'"  H 0 1 N N N 36.654 13.828 9.889  -5.954 2.952  -1.704 "H3'"  AP0 69 
AP0 H9     H9     H 0 1 N N N 38.938 14.113 10.196 -6.818 2.188  -3.796 H9     AP0 70 
AP0 H10    H10    H 0 1 N N N 35.199 12.443 14.046 -5.140 -0.222 1.625  H10    AP0 71 
AP0 HN61   HN61   H 0 0 N N N 35.957 14.907 19.678 -7.712 -3.915 3.383  HN61   AP0 72 
AP0 HN62   HN62   H 0 0 N N N 34.708 14.299 18.820 -8.742 -5.084 2.753  HN62   AP0 73 
AP0 H111   H30    H 0 0 N N N 37.936 17.697 16.911 -8.968 -4.281 -1.731 H111   AP0 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AP0 O7N C7N    DOUB N N 1  
AP0 C7N C8N    SING N N 2  
AP0 C7N C3N    SING N N 3  
AP0 C8N H81    SING N N 4  
AP0 C8N H82    SING N N 5  
AP0 C8N H83    SING N N 6  
AP0 C3N C4N    SING N N 7  
AP0 C3N C2N    DOUB N N 8  
AP0 C4N C5N    SING N N 9  
AP0 C4N H41    SING N N 10 
AP0 C4N H42    SING N N 11 
AP0 C5N C6N    DOUB N N 12 
AP0 C5N H5     SING N N 13 
AP0 C6N N1N    SING N N 14 
AP0 C6N H6     SING N N 15 
AP0 C2N N1N    SING N N 16 
AP0 C2N H2     SING N N 17 
AP0 N1N C1D    SING N N 18 
AP0 C1D C2D    SING N N 19 
AP0 C1D O4D    SING N N 20 
AP0 C1D "H1'"  SING N N 21 
AP0 C2D O2D    SING N N 22 
AP0 C2D C3D    SING N N 23 
AP0 C2D H14    SING N N 24 
AP0 O2D H15    SING N N 25 
AP0 C3D O3D    SING N N 26 
AP0 C3D C4D    SING N N 27 
AP0 C3D H12    SING N N 28 
AP0 O3D H13    SING N N 29 
AP0 O4D C4D    SING N N 30 
AP0 C4D C5D    SING N N 31 
AP0 C4D "H4'"  SING N N 32 
AP0 C5D O5D    SING N N 33 
AP0 C5D "H5'1" SING N N 34 
AP0 C5D "H5'2" SING N N 35 
AP0 O5D PN     SING N N 36 
AP0 PN  O1N    DOUB N N 37 
AP0 PN  O2N    SING N N 38 
AP0 PN  O3     SING N N 39 
AP0 O2N HO2    SING N N 40 
AP0 O3  PA     SING N N 41 
AP0 PA  O1A    DOUB N N 42 
AP0 PA  O2A    SING N N 43 
AP0 PA  O5B    SING N N 44 
AP0 O2A H1     SING N N 45 
AP0 O5B C5B    SING N N 46 
AP0 C5B C4B    SING N N 47 
AP0 C5B H11    SING N N 48 
AP0 C5B H12X   SING N N 49 
AP0 C4B O4B    SING N N 50 
AP0 C4B C3B    SING N N 51 
AP0 C4B H3     SING N N 52 
AP0 O4B C1B    SING N N 53 
AP0 C1B C2B    SING N N 54 
AP0 C1B N9A    SING N N 55 
AP0 C1B H4     SING N N 56 
AP0 C2B O2B    SING N N 57 
AP0 C2B C3B    SING N N 58 
AP0 C2B "H2'"  SING N N 59 
AP0 O2B H8     SING N N 60 
AP0 C3B O3B    SING N N 61 
AP0 C3B "H3'"  SING N N 62 
AP0 O3B H9     SING N N 63 
AP0 N9A C8A    SING Y N 64 
AP0 N9A C4A    SING Y N 65 
AP0 C8A N7A    DOUB Y N 66 
AP0 C8A H10    SING N N 67 
AP0 N7A C5A    SING Y N 68 
AP0 C5A C6A    DOUB Y N 69 
AP0 C5A C4A    SING Y N 70 
AP0 C6A N6A    SING N N 71 
AP0 C6A N1A    SING Y N 72 
AP0 N6A HN61   SING N N 73 
AP0 N6A HN62   SING N N 74 
AP0 C4A N3A    DOUB Y N 75 
AP0 N3A C2A    SING Y N 76 
AP0 C2A N1A    DOUB Y N 77 
AP0 C2A H111   SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AP0 SMILES           ACDLabs              12.01 "Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(N3C=C(CC=C3)C(C)=O)C(O)C2O)C(O)C1O"                                                                                                                                                                                                          
AP0 InChI            InChI                1.06  "InChI=1S/C22H30N6O14P2/c1-10(29)11-3-2-4-27(5-11)21-17(32)15(30)12(40-21)6-38-43(34,35)42-44(36,37)39-7-13-16(31)18(33)22(41-13)28-9-26-14-19(23)24-8-25-20(14)28/h2,4-5,8-9,12-13,15-18,21-22,30-33H,3,6-7H2,1H3,(H,34,35)(H,36,37)(H2,23,24,25)/t12-,13-,15-,16-,17-,18-,21-,22-/m1/s1" 
AP0 InChIKey         InChI                1.06  CIWXCGUGRDQCHH-RBEMOOQDSA-N                                                                                                                                                                                                                                                                
AP0 SMILES_CANONICAL CACTVS               3.385 "CC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O"                                                                                                                                                                 
AP0 SMILES           CACTVS               3.385 "CC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"                                                                                                                                                                            
AP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)C1=CN(C=CC1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O"                                                                                                                                                          
AP0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)C1=CN(C=CC1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O"                                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AP0 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3S,4R,5R)-5-(3-acetylpyridin-1(4H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)"                                
AP0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(3-ethanoyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AP0 "Create component"   2005-08-09 RCSB 
AP0 "Modify descriptor"  2011-06-04 RCSB 
AP0 "Other modification" 2023-09-13 RCSB 
# 
