data_FD0
# 
_chem_comp.id                                    FD0 
_chem_comp.name                                  "2-[2-[2-[2-[[5-oxidanylidene-5-[2-[4-[phenyl(propanoyl)amino]piperidin-1-yl]ethylamino]pentanoyl]amino]ethanoylamino]ethanoylamino]ethanoylamino]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H43 N7 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-20 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        617.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FD0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QT0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FD0 C10 C1  C 0 1 Y N N -51.255 6.685  61.449 11.898  -2.304 1.653  C10 FD0 1  
FD0 C13 C2  C 0 1 N N N -55.040 9.986  60.110 9.962   -0.573 -1.872 C13 FD0 2  
FD0 C17 C3  C 0 1 N N N -59.533 8.462  61.728 5.141   -0.232 -1.194 C17 FD0 3  
FD0 C21 C4  C 0 1 N N N -60.029 7.809  65.630 1.505   -1.018 -0.287 C21 FD0 4  
FD0 C22 C5  C 0 1 N N N -61.447 7.226  65.955 0.256   -0.248 -0.719 C22 FD0 5  
FD0 C24 C6  C 0 1 N N N -63.314 7.383  67.703 -2.216  -0.156 -0.550 C24 FD0 6  
FD0 C01 C7  C 0 1 N N N -51.661 8.856  55.764 11.225  2.816  2.769  C01 FD0 7  
FD0 C02 C8  C 0 1 N N N -51.880 8.349  57.195 10.414  1.563  2.431  C02 FD0 8  
FD0 C03 C9  C 0 1 N N N -53.256 8.786  57.790 10.005  1.606  0.981  C03 FD0 9  
FD0 C06 C10 C 0 1 Y N N -52.878 7.202  59.755 11.462  -0.223 0.543  C06 FD0 10 
FD0 C07 C11 C 0 1 Y N N -52.921 5.862  59.383 12.822  -0.066 0.309  C07 FD0 11 
FD0 C08 C12 C 0 1 Y N N -52.125 4.939  60.043 13.712  -1.029 0.742  C08 FD0 12 
FD0 C09 C13 C 0 1 Y N N -51.293 5.350  61.076 13.250  -2.147 1.413  C09 FD0 13 
FD0 C11 C14 C 0 1 Y N N -52.052 7.613  60.788 11.002  -1.347 1.217  C11 FD0 14 
FD0 C12 C15 C 0 1 N N N -55.015 8.541  59.730 10.211  0.833  -1.321 C12 FD0 15 
FD0 C14 C16 C 0 1 N N N -56.224 10.236 61.043 8.773   -1.200 -1.141 C14 FD0 16 
FD0 C16 C17 C 0 1 N N N -58.460 9.578  61.693 6.390   -1.003 -0.762 C16 FD0 17 
FD0 C19 C18 C 0 1 N N N -60.020 8.537  64.253 2.729   -0.361 -0.873 C19 FD0 18 
FD0 C23 C19 C 0 1 N N N -61.778 7.239  67.458 -0.985  -0.915 -0.124 C23 FD0 19 
FD0 C43 C20 C 0 1 N N N -57.484 8.459  59.740 7.780   0.979  -0.769 C43 FD0 20 
FD0 C44 C21 C 0 1 N N N -56.208 8.210  58.909 8.940   1.671  -1.489 C44 FD0 21 
FD0 N05 N1  N 0 1 N N N -53.718 8.184  59.069 10.558  0.748  0.100  N05 FD0 22 
FD0 N15 N2  N 0 1 N N N -57.221 9.116  61.057 7.582   -0.362 -1.333 N15 FD0 23 
FD0 N18 N3  N 0 1 N N N -59.556 7.815  63.051 3.951   -0.871 -0.625 N18 FD0 24 
FD0 N26 N4  N 0 1 N N N -64.258 6.477  67.017 -3.434  -0.564 -0.143 N26 FD0 25 
FD0 O04 O1  O 0 1 N N N -53.913 9.589  57.211 9.179   2.411  0.607  O04 FD0 26 
FD0 O20 O2  O 0 1 N N N -60.386 9.652  64.179 2.613   0.626  -1.568 O20 FD0 27 
FD0 O25 O3  O 0 1 N N N -63.724 8.231  68.430 -2.110  0.822  -1.259 O25 FD0 28 
FD0 H1  H1  H 0 1 N N N -50.607 7.004  62.252 11.541  -3.178 2.177  H1  FD0 29 
FD0 H2  H2  H 0 1 N N N -54.104 10.248 60.624 9.744   -0.513 -2.938 H2  FD0 30 
FD0 H3  H3  H 0 1 N N N -55.147 10.603 59.206 10.849  -1.188 -1.717 H3  FD0 31 
FD0 H4  H4  H 0 1 N N N -60.520 8.901  61.522 5.207   0.796  -0.838 H4  FD0 32 
FD0 H5  H5  H 0 1 N N N -59.299 7.710  60.960 5.069   -0.236 -2.282 H5  FD0 33 
FD0 H6  H6  H 0 1 N N N -59.300 6.986  65.605 1.577   -1.014 0.800  H6  FD0 34 
FD0 H7  H7  H 0 1 N N N -59.747 8.525  66.416 1.440   -2.046 -0.643 H7  FD0 35 
FD0 H8  H8  H 0 1 N N N -62.202 7.826  65.426 0.322   0.780  -0.363 H8  FD0 36 
FD0 H9  H9  H 0 1 N N N -61.488 6.187  65.597 0.185   -0.252 -1.807 H9  FD0 37 
FD0 H10 H10 H 0 1 N N N -50.679 8.518  55.401 11.520  2.785  3.818  H10 FD0 38 
FD0 H11 H11 H 0 1 N N N -52.451 8.459  55.109 12.115  2.852  2.142  H11 FD0 39 
FD0 H12 H12 H 0 1 N N N -51.696 9.955  55.755 10.616  3.702  2.589  H12 FD0 40 
FD0 H13 H13 H 0 1 N N N -51.833 7.250  57.189 11.022  0.677  2.612  H13 FD0 41 
FD0 H14 H14 H 0 1 N N N -51.079 8.747  57.835 9.523   1.527  3.059  H14 FD0 42 
FD0 H15 H15 H 0 1 N N N -53.572 5.542  58.583 13.183  0.806  -0.216 H15 FD0 43 
FD0 H16 H16 H 0 1 N N N -52.152 3.899  59.753 14.769  -0.908 0.560  H16 FD0 44 
FD0 H17 H17 H 0 1 N N N -50.675 4.629  61.590 13.948  -2.898 1.751  H17 FD0 45 
FD0 H18 H18 H 0 1 N N N -52.027 8.653  61.080 9.945   -1.472 1.400  H18 FD0 46 
FD0 H19 H19 H 0 1 N N N -55.081 7.956  60.659 11.030  1.300  -1.868 H19 FD0 47 
FD0 H20 H20 H 0 1 N N N -55.840 10.373 62.065 8.584   -2.196 -1.541 H20 FD0 48 
FD0 H21 H21 H 0 1 N N N -56.736 11.154 60.718 8.998   -1.273 -0.077 H21 FD0 49 
FD0 H22 H22 H 0 1 N N N -58.237 9.891  62.724 6.461   -0.999 0.326  H22 FD0 50 
FD0 H23 H23 H 0 1 N N N -58.854 10.435 61.127 6.324   -2.031 -1.118 H23 FD0 51 
FD0 H24 H24 H 0 1 N N N -61.430 6.298  67.909 -1.051  -1.943 -0.481 H24 FD0 52 
FD0 H25 H25 H 0 1 N N N -61.259 8.086  67.931 -0.914  -0.911 0.963  H25 FD0 53 
FD0 H26 H26 H 0 1 N N N -58.158 9.104  59.158 8.009   0.896  0.293  H26 FD0 54 
FD0 H27 H27 H 0 1 N N N -57.973 7.491  59.925 6.871   1.566  -0.900 H27 FD0 55 
FD0 H28 H28 H 0 1 N N N -56.224 8.846  58.011 9.097   2.660  -1.060 H28 FD0 56 
FD0 H29 H29 H 0 1 N N N -56.166 7.153  58.609 8.705   1.766  -2.549 H29 FD0 57 
FD0 H31 H31 H 0 1 N N N -59.251 6.867  63.137 4.044   -1.661 -0.069 H31 FD0 58 
FD0 H32 H32 H 0 1 N N N -65.169 6.104  67.192 -3.519  -1.347 0.424  H32 FD0 59 
FD0 C1  C22 C 0 1 N N N ?       ?      ?      -4.630  0.173  -0.557 C1  FD0 60 
FD0 C2  C23 C 0 1 N N N ?       ?      ?      -5.853  -0.484 0.029  C2  FD0 61 
FD0 N1  N5  N 0 1 N N N ?       ?      ?      -7.076  0.026  -0.219 N1  FD0 62 
FD0 C4  C24 C 0 1 N N N ?       ?      ?      -8.265  -0.613 0.351  C4  FD0 63 
FD0 C5  C25 C 0 1 N N N ?       ?      ?      -9.496  0.146  -0.075 C5  FD0 64 
FD0 N2  N6  N 0 1 N N N ?       ?      ?      -10.714 -0.262 0.333  N2  FD0 65 
FD0 C7  C26 C 0 1 N N N ?       ?      ?      -11.910 0.475  -0.081 C7  FD0 66 
FD0 C8  C27 C 0 1 N N N ?       ?      ?      -13.133 -0.182 0.504  C8  FD0 67 
FD0 N3  N7  N 0 1 N N N ?       ?      ?      -14.356 0.328  0.256  N3  FD0 68 
FD0 C15 C28 C 0 1 N N N ?       ?      ?      -15.545 -0.311 0.826  C15 FD0 69 
FD0 C18 C29 C 0 1 N N N ?       ?      ?      -16.775 0.448  0.400  C18 FD0 70 
FD0 O4  O4  O 0 1 N N N ?       ?      ?      -17.989 0.042  0.806  O4  FD0 71 
FD0 O1  O5  O 0 1 N N N ?       ?      ?      -5.737  -1.471 0.724  O1  FD0 72 
FD0 O2  O6  O 0 1 N N N ?       ?      ?      -9.390  1.124  -0.784 O2  FD0 73 
FD0 O3  O7  O 0 1 N N N ?       ?      ?      -13.017 -1.169 1.199  O3  FD0 74 
FD0 O5  O8  O 0 1 N N N ?       ?      ?      -16.670 1.423  -0.306 O5  FD0 75 
FD0 H30 H30 H 0 1 N N N ?       ?      ?      -4.564  1.202  -0.200 H30 FD0 76 
FD0 H33 H33 H 0 1 N N N ?       ?      ?      -4.701  0.169  -1.644 H33 FD0 77 
FD0 H34 H34 H 0 1 N N N ?       ?      ?      -7.169  0.816  -0.775 H34 FD0 78 
FD0 H35 H35 H 0 1 N N N ?       ?      ?      -8.331  -1.641 -0.005 H35 FD0 79 
FD0 H36 H36 H 0 1 N N N ?       ?      ?      -8.194  -0.609 1.438  H36 FD0 80 
FD0 H37 H37 H 0 1 N N N ?       ?      ?      -10.798 -1.044 0.900  H37 FD0 81 
FD0 H38 H38 H 0 1 N N N ?       ?      ?      -11.844 1.504  0.275  H38 FD0 82 
FD0 H39 H39 H 0 1 N N N ?       ?      ?      -11.981 0.472  -1.169 H39 FD0 83 
FD0 H40 H40 H 0 1 N N N ?       ?      ?      -14.449 1.118  -0.299 H40 FD0 84 
FD0 H41 H41 H 0 1 N N N ?       ?      ?      -15.611 -1.339 0.470  H41 FD0 85 
FD0 H42 H42 H 0 1 N N N ?       ?      ?      -15.474 -0.307 1.913  H42 FD0 86 
FD0 H43 H43 H 0 1 N N N ?       ?      ?      -18.748 0.560  0.507  H43 FD0 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FD0 C01 C02 SING N N 1  
FD0 C02 C03 SING N N 2  
FD0 O04 C03 DOUB N N 3  
FD0 C03 N05 SING N N 4  
FD0 C44 C12 SING N N 5  
FD0 C44 C43 SING N N 6  
FD0 N05 C12 SING N N 7  
FD0 N05 C06 SING N N 8  
FD0 C07 C06 DOUB Y N 9  
FD0 C07 C08 SING Y N 10 
FD0 C12 C13 SING N N 11 
FD0 C43 N15 SING N N 12 
FD0 C06 C11 SING Y N 13 
FD0 C08 C09 DOUB Y N 14 
FD0 C13 C14 SING N N 15 
FD0 C11 C10 DOUB Y N 16 
FD0 C14 N15 SING N N 17 
FD0 N15 C16 SING N N 18 
FD0 C09 C10 SING Y N 19 
FD0 C16 C17 SING N N 20 
FD0 C17 N18 SING N N 21 
FD0 N18 C19 SING N N 22 
FD0 O20 C19 DOUB N N 23 
FD0 C19 C21 SING N N 24 
FD0 C21 C22 SING N N 25 
FD0 C22 C23 SING N N 26 
FD0 N26 C24 SING N N 27 
FD0 C23 C24 SING N N 28 
FD0 C24 O25 DOUB N N 29 
FD0 C10 H1  SING N N 30 
FD0 C13 H2  SING N N 31 
FD0 C13 H3  SING N N 32 
FD0 C17 H4  SING N N 33 
FD0 C17 H5  SING N N 34 
FD0 C21 H6  SING N N 35 
FD0 C21 H7  SING N N 36 
FD0 C22 H8  SING N N 37 
FD0 C22 H9  SING N N 38 
FD0 C01 H10 SING N N 39 
FD0 C01 H11 SING N N 40 
FD0 C01 H12 SING N N 41 
FD0 C02 H13 SING N N 42 
FD0 C02 H14 SING N N 43 
FD0 C07 H15 SING N N 44 
FD0 C08 H16 SING N N 45 
FD0 C09 H17 SING N N 46 
FD0 C11 H18 SING N N 47 
FD0 C12 H19 SING N N 48 
FD0 C14 H20 SING N N 49 
FD0 C14 H21 SING N N 50 
FD0 C16 H22 SING N N 51 
FD0 C16 H23 SING N N 52 
FD0 C23 H24 SING N N 53 
FD0 C23 H25 SING N N 54 
FD0 C43 H26 SING N N 55 
FD0 C43 H27 SING N N 56 
FD0 C44 H28 SING N N 57 
FD0 C44 H29 SING N N 58 
FD0 N18 H31 SING N N 59 
FD0 N26 H32 SING N N 60 
FD0 N26 C1  SING N N 61 
FD0 C1  C2  SING N N 62 
FD0 C2  N1  SING N N 63 
FD0 N1  C4  SING N N 64 
FD0 C4  C5  SING N N 65 
FD0 C5  N2  SING N N 66 
FD0 N2  C7  SING N N 67 
FD0 C7  C8  SING N N 68 
FD0 C8  N3  SING N N 69 
FD0 N3  C15 SING N N 70 
FD0 C15 C18 SING N N 71 
FD0 C18 O4  SING N N 72 
FD0 C2  O1  DOUB N N 73 
FD0 C5  O2  DOUB N N 74 
FD0 C8  O3  DOUB N N 75 
FD0 C18 O5  DOUB N N 76 
FD0 C1  H30 SING N N 77 
FD0 C1  H33 SING N N 78 
FD0 N1  H34 SING N N 79 
FD0 C4  H35 SING N N 80 
FD0 C4  H36 SING N N 81 
FD0 N2  H37 SING N N 82 
FD0 C7  H38 SING N N 83 
FD0 C7  H39 SING N N 84 
FD0 N3  H40 SING N N 85 
FD0 C15 H41 SING N N 86 
FD0 C15 H42 SING N N 87 
FD0 O4  H43 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FD0 InChI            InChI                1.06  "InChI=1S/C29H43N7O8/c1-2-28(42)36(21-7-4-3-5-8-21)22-11-14-35(15-12-22)16-13-30-23(37)9-6-10-24(38)31-17-25(39)32-18-26(40)33-19-27(41)34-20-29(43)44/h3-5,7-8,22H,2,6,9-20H2,1H3,(H,30,37)(H,31,38)(H,32,39)(H,33,40)(H,34,41)(H,43,44)" 
FD0 InChIKey         InChI                1.06  WBAFWCQXKNZRIF-UHFFFAOYSA-N                                                                                                                                                                                                                
FD0 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N(C1CCN(CCNC(=O)CCCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(O)=O)CC1)c2ccccc2"                                                                                                                                                                
FD0 SMILES           CACTVS               3.385 "CCC(=O)N(C1CCN(CCNC(=O)CCCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(O)=O)CC1)c2ccccc2"                                                                                                                                                                
FD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccccc1)C2CCN(CC2)CCNC(=O)CCCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)O"                                                                                                                                                                
FD0 SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccccc1)C2CCN(CC2)CCNC(=O)CCCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)O"                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           FD0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[2-[2-[2-[[5-oxidanylidene-5-[2-[4-[phenyl(propanoyl)amino]piperidin-1-yl]ethylamino]pentanoyl]amino]ethanoylamino]ethanoylamino]ethanoylamino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FD0 "Create component"  2022-01-20 PDBE 
FD0 "Modify descriptor" 2022-08-22 RCSB 
FD0 "Initial release"   2023-05-24 RCSB 
# 
