data_IO0
# 
_chem_comp.id                                    IO0 
_chem_comp.name                                  "(2S)-2-azanyl-6-[[(2R)-1-[[(2R)-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H23 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "ACdV thioaldehyde" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-01 
_chem_comp.pdbx_modified_date                    2024-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.414 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IO0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PY9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IO0 O43 O1  O 0 1 N N N N N N -12.699 -6.771 -8.782  4.150  2.306  1.075  O43 IO0 1  
IO0 C31 C1  C 0 1 N N N N N N -13.202 -6.076 -7.921  4.942  1.863  0.277  C31 IO0 2  
IO0 O42 O2  O 0 1 N N N N N N -14.374 -6.293 -7.381  5.969  2.619  -0.140 O42 IO0 3  
IO0 C30 C2  C 0 1 N N R N N N -12.517 -4.839 -7.366  4.779  0.459  -0.245 C30 IO0 4  
IO0 C32 C3  C 0 1 N N N N N N -12.768 -4.694 -5.852  6.018  -0.364 0.110  C32 IO0 5  
IO0 N29 N1  N 0 1 N N N N N N -11.108 -4.837 -7.729  3.595  -0.154 0.363  N29 IO0 6  
IO0 C13 C4  C 0 1 N N N N N N -10.383 -3.713 -7.720  2.378  0.050  -0.178 C13 IO0 7  
IO0 O18 O3  O 0 1 N N N N N N -10.761 -2.670 -7.194  2.262  0.741  -1.168 O18 IO0 8  
IO0 C12 C5  C 0 1 N N R N N N -9.035  -3.795 -8.450  1.160  -0.580 0.447  C12 IO0 9  
IO0 C16 C6  C 0 1 N N N N N N -8.377  -5.054 -7.981  1.313  -2.079 0.444  C16 IO0 10 
IO0 S   S1  S 0 1 N N N N N N -6.926  -5.102 -7.436  0.250  -2.990 -0.329 S   IO0 11 
IO0 N30 N2  N 0 1 N N N N N N -8.233  -2.631 -8.074  -0.031 -0.209 -0.322 N30 IO0 12 
IO0 C25 C7  C 0 1 N N N N N N -7.132  -2.273 -8.738  -1.241 -0.205 0.272  C25 IO0 13 
IO0 O25 O4  O 0 1 N N N N N N -6.711  -2.895 -9.711  -1.344 -0.507 1.442  O25 IO0 14 
IO0 C24 C8  C 0 1 N N N N N N -6.424  -1.051 -8.214  -2.466 0.177  -0.519 C24 IO0 15 
IO0 C23 C9  C 0 1 N N N N N N -7.080  0.224  -8.711  -3.700 0.101  0.384  C23 IO0 16 
IO0 C22 C10 C 0 1 N N N N N N -6.297  1.477  -8.352  -4.943 0.489  -0.419 C22 IO0 17 
IO0 C21 C11 C 0 1 N N S N N N -6.989  2.681  -8.989  -6.176 0.413  0.484  C21 IO0 18 
IO0 N31 N3  N 0 1 N N N N N N -7.005  2.526  -10.454 -6.398 -0.980 0.895  N31 IO0 19 
IO0 C20 C12 C 0 1 N N N N N N -6.245  3.949  -8.607  -7.382 0.911  -0.270 C20 IO0 20 
IO0 O20 O5  O 0 1 N N N N N N -5.778  4.689  -9.441  -8.156 0.124  -0.762 O20 IO0 21 
IO0 O21 O6  O 0 1 N N N N N N -6.162  4.135  -7.317  -7.597 2.230  -0.396 O21 IO0 22 
IO0 H1  H1  H 0 1 N N N N N N -14.761 -7.070 -7.766  6.034  3.512  0.226  H1  IO0 23 
IO0 H2  H2  H 0 1 N N N N N N -12.987 -3.969 -7.848  4.658  0.486  -1.328 H2  IO0 24 
IO0 H3  H3  H 0 1 N N N N N N -12.261 -3.792 -5.480  6.139  -0.391 1.193  H3  IO0 25 
IO0 H6  H6  H 0 1 N N N N N N -10.671 -5.697 -7.992  3.687  -0.707 1.154  H6  IO0 26 
IO0 H7  H7  H 0 1 N N N N N N -9.198  -3.827 -9.537  1.055  -0.228 1.473  H7  IO0 27 
IO0 H8  H8  H 0 1 N N N N N N -8.940  -5.975 -8.024  2.140  -2.539 0.964  H8  IO0 28 
IO0 H9  H9  H 0 1 N N N N N N -8.521  -2.082 -7.289  0.051  0.033  -1.257 H9  IO0 29 
IO0 H10 H10 H 0 1 N N N N N N -6.454  -1.064 -7.114  -2.354 1.194  -0.895 H10 IO0 30 
IO0 H11 H11 H 0 1 N N N N N N -5.378  -1.071 -8.553  -2.586 -0.509 -1.357 H11 IO0 31 
IO0 H12 H12 H 0 1 N N N N N N -8.083  0.298  -8.265  -3.812 -0.915 0.760  H12 IO0 32 
IO0 H13 H13 H 0 1 N N N N N N -7.168  0.168  -9.806  -3.579 0.788  1.222  H13 IO0 33 
IO0 H14 H14 H 0 1 N N N N N N -5.269  1.395  -8.735  -4.831 1.505  -0.795 H14 IO0 34 
IO0 H15 H15 H 0 1 N N N N N N -6.272  1.599  -7.259  -5.063 -0.198 -1.257 H15 IO0 35 
IO0 H16 H16 H 0 1 N N N N N N -8.020  2.742  -8.611  -6.019 1.032  1.367  H16 IO0 36 
IO0 H17 H17 H 0 1 N N N N N N -7.496  1.689  -10.696 -7.168 -1.048 1.543  H17 IO0 37 
IO0 H18 H18 H 0 1 N N N N N N -7.463  3.313  -10.867 -6.546 -1.574 0.093  H18 IO0 38 
IO0 H20 H20 H 0 1 N N N N N N -5.681  4.936  -7.142  -8.384 2.502  -0.888 H20 IO0 39 
IO0 C1  C13 C 0 1 N N N N N N ?       ?      ?       5.853  -1.790 -0.420 C1  IO0 40 
IO0 C2  C14 C 0 1 N N N N N N ?       ?      ?       7.255  0.275  -0.525 C2  IO0 41 
IO0 H4  H4  H 0 1 N N N N N N ?       ?      ?       6.736  -2.377 -0.167 H4  IO0 42 
IO0 H5  H5  H 0 1 N N N N N N ?       ?      ?       4.972  -2.246 0.032  H5  IO0 43 
IO0 H19 H19 H 0 1 N N N N N N ?       ?      ?       5.733  -1.763 -1.503 H19 IO0 44 
IO0 H21 H21 H 0 1 N N N N N N ?       ?      ?       7.373  1.291  -0.147 H21 IO0 45 
IO0 H22 H22 H 0 1 N N N N N N ?       ?      ?       8.138  -0.311 -0.272 H22 IO0 46 
IO0 H23 H23 H 0 1 N N N N N N ?       ?      ?       7.135  0.302  -1.608 H23 IO0 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IO0 N31 C21 SING N N 1  
IO0 O25 C25 DOUB N N 2  
IO0 O20 C20 DOUB N N 3  
IO0 C21 C20 SING N N 4  
IO0 C21 C22 SING N N 5  
IO0 O43 C31 DOUB N N 6  
IO0 C25 C24 SING N N 7  
IO0 C25 N30 SING N N 8  
IO0 C23 C22 SING N N 9  
IO0 C23 C24 SING N N 10 
IO0 C20 O21 SING N N 11 
IO0 C12 N30 SING N N 12 
IO0 C12 C16 SING N N 13 
IO0 C12 C13 SING N N 14 
IO0 C16 S   DOUB N N 15 
IO0 C31 O42 SING N N 16 
IO0 C31 C30 SING N N 17 
IO0 N29 C13 SING N N 18 
IO0 N29 C30 SING N N 19 
IO0 C13 O18 DOUB N N 20 
IO0 C30 C32 SING N N 21 
IO0 O42 H1  SING N N 22 
IO0 C30 H2  SING N N 23 
IO0 C32 H3  SING N N 24 
IO0 N29 H6  SING N N 25 
IO0 C12 H7  SING N N 26 
IO0 C16 H8  SING N N 27 
IO0 N30 H9  SING N N 28 
IO0 C24 H10 SING N N 29 
IO0 C24 H11 SING N N 30 
IO0 C23 H12 SING N N 31 
IO0 C23 H13 SING N N 32 
IO0 C22 H14 SING N N 33 
IO0 C22 H15 SING N N 34 
IO0 C21 H16 SING N N 35 
IO0 N31 H17 SING N N 36 
IO0 N31 H18 SING N N 37 
IO0 O21 H20 SING N N 38 
IO0 C32 C1  SING N N 39 
IO0 C32 C2  SING N N 40 
IO0 C1  H4  SING N N 41 
IO0 C1  H5  SING N N 42 
IO0 C1  H19 SING N N 43 
IO0 C2  H21 SING N N 44 
IO0 C2  H22 SING N N 45 
IO0 C2  H23 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IO0 InChI            InChI                1.06  "InChI=1S/C14H23N3O6S/c1-7(2)11(14(22)23)17-12(19)9(6-24)16-10(18)5-3-4-8(15)13(20)21/h6-9,11H,3-5,15H2,1-2H3,(H,16,18)(H,17,19)(H,20,21)(H,22,23)/t8-,9-,11+/m0/s1" 
IO0 InChIKey         InChI                1.06  NKCVUNAEQXDNRK-ATZCPNFKSA-N                                                                                                                                          
IO0 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@@H](NC(=O)[C@@H](NC(=O)CCC[C@H](N)C(O)=O)C=S)C(O)=O"                                                                                                        
IO0 SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)[CH](NC(=O)CCC[CH](N)C(O)=O)C=S)C(O)=O"                                                                                                             
IO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H](C(=O)O)NC(=O)[C@H](C=S)NC(=O)CCC[C@@H](C(=O)O)N"                                                                                                         
IO0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)O)NC(=O)C(C=S)NC(=O)CCCC(C(=O)O)N"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           IO0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-6-[[(2~{R})-1-[[(2~{R})-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IO0 "Create component" 2023-08-01 PDBE 
IO0 "Initial release"  2024-08-07 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IO0 
_pdbx_chem_comp_synonyms.name         "ACdV thioaldehyde" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
