data_WM0
# 
_chem_comp.id                                    WM0 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[4-({2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}methyl)phenyl]methyl}piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H34 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-28 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.571 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WM0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ELE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WM0 N1  N1  N 0  1 N N N -36.426 -30.351 -69.085 5.636  0.356  0.065  N1  WM0 1  
WM0 N3  N2  N 1  1 N N N -43.714 -31.521 -63.987 -3.474 2.361  1.077  N3  WM0 2  
WM0 C4  C1  C 0  1 N N N -37.377 -29.670 -68.658 4.670  1.387  0.465  C4  WM0 3  
WM0 C5  C2  C 0  1 Y N N -37.959 -30.118 -67.267 3.273  0.827  0.381  C5  WM0 4  
WM0 C6  C3  C 0  1 Y N N -39.037 -30.993 -67.159 2.712  0.203  1.480  C6  WM0 5  
WM0 C7  C4  C 0  1 Y N N -39.509 -31.439 -65.917 1.431  -0.311 1.403  C7  WM0 6  
WM0 C8  C5  C 0  1 Y N N -38.918 -30.963 -64.756 0.711  -0.201 0.228  C8  WM0 7  
WM0 C10 C6  C 0  1 Y N N -41.746 -30.264 -63.040 -3.019 -0.024 0.547  C10 WM0 8  
WM0 C13 C7  C 0  1 Y N N -43.518 -28.142 -62.506 -5.729 -0.593 0.541  C13 WM0 9  
WM0 C15 C8  C 0  1 N N N -45.467 -26.517 -63.655 -6.737 -1.566 -1.761 C15 WM0 10 
WM0 C17 C9  C 0  1 N N R -44.238 -25.835 -61.717 -7.891 0.278  0.039  C17 WM0 11 
WM0 C20 C10 C 0  1 Y N N -42.160 -28.034 -62.172 -4.808 -1.601 0.291  C20 WM0 12 
WM0 C21 C11 C 0  1 Y N N -41.275 -29.094 -62.439 -3.457 -1.316 0.289  C21 WM0 13 
WM0 C22 C12 C 0  1 Y N N -37.836 -30.113 -64.855 1.272  0.423  -0.870 C22 WM0 14 
WM0 C24 C13 C 0  1 N N N -36.700 -31.763 -69.255 5.783  -0.662 1.113  C24 WM0 15 
WM0 C26 C14 C 0  1 N N R -34.362 -32.292 -69.534 8.051  -1.219 0.230  C26 WM0 16 
WM0 C1  C15 C 0  1 N N R -34.046 -30.894 -69.404 7.865  -0.128 -0.828 C1  WM0 17 
WM0 O1  O1  O 0  1 N N N -32.744 -30.791 -68.795 9.133  0.451  -1.144 O1  WM0 18 
WM0 C2  C16 C 0  1 N N R -35.090 -30.146 -68.547 6.932  0.954  -0.279 C2  WM0 19 
WM0 N2  N3  N 0  1 N N N -40.871 -31.441 -63.328 -1.649 0.265  0.544  N2  WM0 20 
WM0 O2  O2  O 0  1 N N N -34.889 -28.144 -69.826 6.205  1.445  -2.531 O2  WM0 21 
WM0 C3  C17 C 0  1 N N N -34.737 -28.658 -68.533 6.728  2.037  -1.341 C3  WM0 22 
WM0 O3  O3  O -1 1 N N N -44.239 -31.396 -65.319 -4.051 3.046  1.903  O3  WM0 23 
WM0 N4  N4  N 0  1 N N N -44.506 -27.064 -62.284 -7.099 -0.882 0.544  N4  WM0 24 
WM0 O4  O4  O 0  1 N N N -43.769 -32.727 -63.244 -2.513 2.809  0.477  O4  WM0 25 
WM0 O5  O5  O 0  1 N N N -44.387 -25.071 -63.574 -7.281 -0.325 -2.219 O5  WM0 26 
WM0 O6  O6  O 0  1 N N N -36.053 -33.789 -70.393 6.841  -2.773 1.633  O6  WM0 27 
WM0 O7  O7  O 0  1 N N N -33.322 -32.982 -70.345 8.876  -2.260 -0.298 O7  WM0 28 
WM0 C9  C18 C 0  1 N N N -39.412 -31.384 -63.351 -0.684 -0.763 0.145  C9  WM0 29 
WM0 C11 C19 C 0  1 Y N N -43.110 -30.361 -63.350 -3.941 0.983  0.802  C11 WM0 30 
WM0 C12 C20 C 0  1 Y N N -43.968 -29.302 -63.094 -5.292 0.700  0.799  C12 WM0 31 
WM0 C14 C21 C 0  1 N N S -45.568 -26.886 -62.901 -7.421 -1.954 -0.439 C14 WM0 32 
WM0 C16 C22 C 0  1 N N N -43.825 -25.010 -62.578 -7.220 0.740  -1.266 C16 WM0 33 
WM0 C18 C23 C 0  1 N N N -45.325 -25.553 -61.280 -9.260 -0.343 -0.329 C18 WM0 34 
WM0 C19 C24 C 0  1 N N N -46.245 -26.253 -62.144 -8.949 -1.821 -0.648 C19 WM0 35 
WM0 C23 C25 C 0  1 Y N N -37.365 -29.692 -66.095 2.552  0.941  -0.792 C23 WM0 36 
WM0 C25 C26 C 0  1 N N S -35.673 -32.414 -70.180 6.682  -1.793 0.606  C25 WM0 37 
WM0 H2  H2  H 0  1 N N N -37.033 -28.630 -68.562 4.875  1.700  1.488  H2  WM0 38 
WM0 H3  H3  H 0  1 N N N -38.190 -29.721 -69.398 4.757  2.245  -0.202 H3  WM0 39 
WM0 H4  H4  H 0  1 N N N -39.524 -31.338 -68.059 3.274  0.117  2.398  H4  WM0 40 
WM0 H5  H5  H 0  1 N N N -40.324 -32.146 -65.865 0.993  -0.799 2.262  H5  WM0 41 
WM0 H7  H7  H 0  1 N N N -45.028 -27.248 -64.350 -6.916 -2.340 -2.506 H7  WM0 42 
WM0 H8  H8  H 0  1 N N N -46.452 -26.202 -64.029 -5.665 -1.456 -1.598 H8  WM0 43 
WM0 H9  H9  H 0  1 N N N -43.497 -25.966 -60.915 -7.970 1.081  0.772  H9  WM0 44 
WM0 H10 H10 H 0  1 N N N -41.792 -27.131 -61.707 -5.148 -2.608 0.098  H10 WM0 45 
WM0 H11 H11 H 0  1 N N N -40.231 -29.003 -62.179 -2.740 -2.098 0.086  H11 WM0 46 
WM0 H12 H12 H 0  1 N N N -37.347 -29.769 -63.956 0.710  0.508  -1.788 H12 WM0 47 
WM0 H13 H13 H 0  1 N N N -36.663 -32.257 -68.273 6.232  -0.211 1.998  H13 WM0 48 
WM0 H14 H14 H 0  1 N N N -37.703 -31.885 -69.689 4.803  -1.065 1.368  H14 WM0 49 
WM0 H15 H15 H 0  1 N N N -34.404 -32.756 -68.537 8.524  -0.793 1.114  H15 WM0 50 
WM0 H16 H16 H 0  1 N N N -34.023 -30.428 -70.400 7.430  -0.563 -1.728 H16 WM0 51 
WM0 H17 H17 H 0  1 N N N -32.511 -29.875 -68.698 9.777  -0.179 -1.495 H17 WM0 52 
WM0 H18 H18 H 0  1 N N N -35.040 -30.531 -67.518 7.376  1.398  0.612  H18 WM0 53 
WM0 H19 H19 H 0  1 N N N -41.105 -32.128 -62.640 -1.339 1.145  0.807  H19 WM0 54 
WM0 H20 H20 H 0  1 N N N -34.672 -27.219 -69.827 6.051  2.075  -3.249 H20 WM0 55 
WM0 H21 H21 H 0  1 N N N -35.408 -28.126 -67.843 6.026  2.783  -0.968 H21 WM0 56 
WM0 H22 H22 H 0  1 N N N -33.695 -28.529 -68.204 7.683  2.514  -1.561 H22 WM0 57 
WM0 H24 H24 H 0  1 N N N -35.422 -34.207 -70.967 6.011  -3.177 1.923  H24 WM0 58 
WM0 H25 H25 H 0  1 N N N -33.541 -33.903 -70.424 9.035  -2.987 0.320  H25 WM0 59 
WM0 H26 H26 H 0  1 N N N -39.005 -32.376 -63.104 -0.890 -1.075 -0.879 H26 WM0 60 
WM0 H27 H27 H 0  1 N N N -39.065 -30.650 -62.608 -0.771 -1.621 0.811  H27 WM0 61 
WM0 H28 H28 H 0  1 N N N -45.011 -29.389 -63.362 -6.009 1.484  0.994  H28 WM0 62 
WM0 H29 H29 H 0  1 N N N -46.037 -27.879 -62.969 -7.122 -2.942 -0.091 H29 WM0 63 
WM0 H30 H30 H 0  1 N N N -43.944 -23.994 -62.173 -7.744 1.611  -1.658 H30 WM0 64 
WM0 H31 H31 H 0  1 N N N -42.759 -25.207 -62.767 -6.178 0.996  -1.070 H31 WM0 65 
WM0 H32 H32 H 0  1 N N N -45.429 -25.896 -60.240 -9.948 -0.271 0.513  H32 WM0 66 
WM0 H33 H33 H 0  1 N N N -45.495 -24.467 -61.327 -9.678 0.152  -1.206 H33 WM0 67 
WM0 H34 H34 H 0  1 N N N -46.870 -25.537 -62.697 -9.212 -2.050 -1.680 H34 WM0 68 
WM0 H35 H35 H 0  1 N N N -46.889 -26.923 -61.555 -9.484 -2.478 0.037  H35 WM0 69 
WM0 H36 H36 H 0  1 N N N -36.520 -29.021 -66.142 2.988  1.432  -1.649 H36 WM0 70 
WM0 H37 H37 H 0  1 N N N -35.665 -31.873 -71.138 6.227  -2.254 -0.271 H37 WM0 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WM0 N1  C4  SING N N 1  
WM0 N1  C24 SING N N 2  
WM0 N1  C2  SING N N 3  
WM0 N3  O3  SING N N 4  
WM0 N3  O4  DOUB N N 5  
WM0 N3  C11 SING N N 6  
WM0 C4  C5  SING N N 7  
WM0 C5  C6  DOUB Y N 8  
WM0 C5  C23 SING Y N 9  
WM0 C6  C7  SING Y N 10 
WM0 C7  C8  DOUB Y N 11 
WM0 C8  C22 SING Y N 12 
WM0 C8  C9  SING N N 13 
WM0 C10 C21 DOUB Y N 14 
WM0 C10 N2  SING N N 15 
WM0 C10 C11 SING Y N 16 
WM0 C13 C20 DOUB Y N 17 
WM0 C13 N4  SING N N 18 
WM0 C13 C12 SING Y N 19 
WM0 C17 N4  SING N N 20 
WM0 C17 C16 SING N N 21 
WM0 C17 C18 SING N N 22 
WM0 C20 C21 SING Y N 23 
WM0 C22 C23 DOUB Y N 24 
WM0 C24 C25 SING N N 25 
WM0 C26 C1  SING N N 26 
WM0 C26 O7  SING N N 27 
WM0 C26 C25 SING N N 28 
WM0 C1  O1  SING N N 29 
WM0 C1  C2  SING N N 30 
WM0 C2  C3  SING N N 31 
WM0 N2  C9  SING N N 32 
WM0 O2  C3  SING N N 33 
WM0 N4  C14 SING N N 34 
WM0 O5  C16 SING N N 35 
WM0 O6  C25 SING N N 36 
WM0 C11 C12 DOUB Y N 37 
WM0 C14 C19 SING N N 38 
WM0 C18 C19 SING N N 39 
WM0 C14 C15 SING N N 40 
WM0 C4  H2  SING N N 41 
WM0 C4  H3  SING N N 42 
WM0 C6  H4  SING N N 43 
WM0 C7  H5  SING N N 44 
WM0 C15 H7  SING N N 45 
WM0 C15 H8  SING N N 46 
WM0 C17 H9  SING N N 47 
WM0 C20 H10 SING N N 48 
WM0 C21 H11 SING N N 49 
WM0 C22 H12 SING N N 50 
WM0 C24 H13 SING N N 51 
WM0 C24 H14 SING N N 52 
WM0 C26 H15 SING N N 53 
WM0 C1  H16 SING N N 54 
WM0 O1  H17 SING N N 55 
WM0 C2  H18 SING N N 56 
WM0 N2  H19 SING N N 57 
WM0 O2  H20 SING N N 58 
WM0 C3  H21 SING N N 59 
WM0 C3  H22 SING N N 60 
WM0 O6  H24 SING N N 61 
WM0 O7  H25 SING N N 62 
WM0 C9  H26 SING N N 63 
WM0 C9  H27 SING N N 64 
WM0 C12 H28 SING N N 65 
WM0 C14 H29 SING N N 66 
WM0 C16 H30 SING N N 67 
WM0 C16 H31 SING N N 68 
WM0 C18 H32 SING N N 69 
WM0 C18 H33 SING N N 70 
WM0 C19 H34 SING N N 71 
WM0 C19 H35 SING N N 72 
WM0 C23 H36 SING N N 73 
WM0 C25 H37 SING N N 74 
WM0 C15 O5  SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WM0 SMILES           ACDLabs              12.01 "OCC1C(O)C(O)C(O)CN1Cc1ccc(cc1)CNc1ccc(cc1[N+]([O-])=O)N1C2CCC1COC2"                                                                                                                                               
WM0 InChI            InChI                1.06  "InChI=1S/C26H34N4O7/c31-13-23-25(33)26(34)24(32)12-28(23)11-17-3-1-16(2-4-17)10-27-21-8-7-18(9-22(21)30(35)36)29-19-5-6-20(29)15-37-14-19/h1-4,7-9,19-20,23-27,31-34H,5-6,10-15H2/t19-,20+,23-,24+,25-,26-/m1/s1" 
WM0 InChIKey         InChI                1.06  KLMRKLAEGBJCCT-BRHPATDUSA-N                                                                                                                                                                                        
WM0 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1Cc2ccc(CNc3ccc(cc3[N+]([O-])=O)N4[C@@H]5CC[C@H]4COC5)cc2"                                                                                                                   
WM0 SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1Cc2ccc(CNc3ccc(cc3[N+]([O-])=O)N4[CH]5CC[CH]4COC5)cc2"                                                                                                                             
WM0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNc2ccc(cc2[N+](=O)[O-])N3[C@@H]4CC[C@H]3COC4)CN5C[C@@H]([C@H]([C@@H]([C@H]5CO)O)O)O"                                                                                                                    
WM0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNc2ccc(cc2[N+](=O)[O-])N3C4CCC3COC4)CN5CC(C(C(C5CO)O)O)O"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WM0 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[4-({2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}methyl)phenyl]methyl}piperidine-3,4,5-triol"                         
WM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[[4-[[[2-nitro-4-[(1~{R},5~{S})-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]phenyl]amino]methyl]phenyl]methyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WM0 "Create component" 2022-09-28 RCSB 
WM0 "Initial release"  2023-02-22 RCSB 
# 
