data_AF1
#

_chem_comp.id                                   AF1
_chem_comp.name                                 "4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H23 N O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucose;
4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose;
4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       321.324
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AF1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BG9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AF1  "4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucose"  PDB  ?  
2  AF1  "4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose"       PDB  ?  
3  AF1  "4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AF1  C1    C1    C  0  1  N  N  R  7.442  42.618  41.677   4.208   0.486  -0.215  C1    AF1   1  
AF1  C2    C2    C  0  1  N  N  R  6.716  43.985  41.719   3.605  -0.705   0.534  C2    AF1   2  
AF1  C3    C3    C  0  1  N  N  S  5.465  43.876  40.900   2.299  -1.120  -0.152  C3    AF1   3  
AF1  C4    C4    C  0  1  N  N  S  5.818  43.598  39.423   1.351   0.083  -0.192  C4    AF1   4  
AF1  C5    C5    C  0  1  N  N  R  6.888  42.436  39.317   2.042   1.243  -0.913  C5    AF1   5  
AF1  C6    C6    C  0  1  N  N  N  7.050  41.443  38.175   1.125   2.468  -0.904  C6    AF1   6  
AF1  O1    O1    O  0  1  N  Y  N  8.413  42.543  42.734   5.397   0.915   0.452  O1    AF1   7  
AF1  O2    O2    O  0  1  N  N  N  6.405  44.268  43.074   4.524  -1.798   0.512  O2    AF1   8  
AF1  O3    O3    O  0  1  N  N  N  4.550  44.975  40.943   1.691  -2.184   0.583  O3    AF1   9  
AF1  O5    O5    O  0  1  N  N  N  7.925  42.400  40.327   3.264   1.559  -0.242  O5    AF1  10  
AF1  N4    N4    N  0  1  N  N  N  4.489  43.189  39.016   0.125  -0.283  -0.914  N4    AF1  11  
AF1  C1H   C1H   C  0  1  N  N  S  3.844  43.592  37.813  -0.964  -0.593   0.022  C1H   AF1  12  
AF1  C2H   C2H   C  0  1  N  N  S  2.338  43.710  38.000  -1.948  -1.555  -0.646  C2H   AF1  13  
AF1  C3H   C3H   C  0  1  N  N  S  1.713  42.351  37.888  -3.198  -1.661   0.237  C3H   AF1  14  
AF1  C4H   C4H   C  0  1  N  N  S  2.041  41.784  36.475  -3.920  -0.312   0.218  C4H   AF1  15  
AF1  C5H   C5H   C  0  1  N  N  N  3.480  42.074  35.932  -2.950   0.798   0.498  C5H   AF1  16  
AF1  C6H   C6H   C  0  1  N  N  N  4.266  43.026  36.568  -1.664   0.677   0.409  C6H   AF1  17  
AF1  C7H   C7H   C  0  1  N  N  N  4.069  41.351  34.695  -3.506   2.136   0.910  C7H   AF1  18  
AF1  O2H   O2H   O  0  1  N  N  N  2.057  44.225  39.292  -2.311  -1.054  -1.934  O2H   AF1  19  
AF1  O3H   O3H   O  0  1  N  N  N  0.313  42.484  38.130  -2.815  -1.982   1.576  O3H   AF1  20  
AF1  O4H   O4H   O  0  1  N  N  N  1.021  41.040  35.761  -4.512  -0.110  -1.067  O4H   AF1  21  
AF1  O7H   O7H   O  0  1  N  N  N  5.426  40.888  34.843  -2.432   3.052   1.130  O7H   AF1  22  
AF1  H1    H1    H  0  1  N  N  N  6.771  41.772  41.886   4.451   0.190  -1.235  H1    AF1  23  
AF1  H2    H2    H  0  1  N  N  N  7.341  44.793  41.311   3.399  -0.420   1.566  H2    AF1  24  
AF1  H3    H3    H  0  1  N  N  N  4.931  43.043  41.380   2.511  -1.452  -1.168  H3    AF1  25  
AF1  H4    H4    H  0  1  N  N  N  6.273  44.408  38.834   1.101   0.383   0.825  H4    AF1  26  
AF1  H5    H5    H  0  1  N  N  N  5.866  42.041  39.219   2.256   0.956  -1.942  H5    AF1  27  
AF1  H61   H6    H  0  1  N  N  N  7.089  41.986  37.219   0.937   2.774   0.125  H61   AF1  28  
AF1  H62   H6A   H  0  1  N  N  N  7.982  40.875  38.312   1.603   3.284  -1.445  H62   AF1  29  
AF1  H6B   H6B   H  0  1  N  N  N  6.196  40.750  38.168   0.180   2.217  -1.386  H6B   AF1  30  
AF1  HO2   HO2   H  0  1  N  Y  N  7.208  44.331  43.577   5.376  -1.604   0.926  HO2   AF1  31  
AF1  HO3   HO3   H  0  1  N  Y  N  4.347  45.184  41.847   2.240  -2.977   0.654  HO3   AF1  32  
AF1  HN4   HN4   H  0  1  N  N  N  4.540  42.192  38.953  -0.147   0.446  -1.556  HN4   AF1  33  
AF1  H1H   H1H   H  0  1  N  N  N  4.249  44.601  37.648  -0.550  -1.062   0.915  H1H   AF1  34  
AF1  H2H   H2H   H  0  1  N  N  N  1.933  44.381  37.229  -1.488  -2.538  -0.749  H2H   AF1  35  
AF1  H3H   H3H   H  0  1  N  N  N  2.109  41.641  38.629  -3.859  -2.435  -0.154  H3H   AF1  36  
AF1  H4H   H4H   H  0  1  N  N  N  1.962  41.267  35.507  -4.702  -0.310   0.977  H4H   AF1  37  
AF1  H6H   H6H   H  0  1  N  N  N  5.198  43.340  36.122  -1.057   1.543   0.627  H6H   AF1  38  
AF1  H7H   H7H   H  0  1  N  N  N  3.438  40.473  34.491  -4.153   2.519   0.120  H7H   AF1  39  
AF1  H7HA  H7HA  H  0  0  N  N  N  4.083  42.092  33.882  -4.082   2.024   1.828  H7HA  AF1  40  
AF1  HO2H  HO2H  H  0  0  N  N  N  1.994  43.508  39.912  -2.934  -1.616  -2.414  HO2H  AF1  41  
AF1  HO3H  HO3H  H  0  0  N  N  N  0.154  42.514  39.066  -3.559  -2.064   2.188  HO3H  AF1  42  
AF1  HO4H  HO4H  H  0  0  N  N  N  0.284  40.877  36.339  -4.988   0.728  -1.154  HO4H  AF1  43  
AF1  HO7H  HO7H  H  0  0  N  N  N  5.822  40.786  33.985  -2.717   3.936   1.398  HO7H  AF1  44  
AF1  HO1   H23   H  0  1  N  Y  N  9.287  42.526  42.361   5.834   1.669   0.032  HO1   AF1  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AF1  C1   C2    SING  N  N   1  
AF1  C1   O1    SING  N  N   2  
AF1  C1   O5    SING  N  N   3  
AF1  C1   H1    SING  N  N   4  
AF1  C2   C3    SING  N  N   5  
AF1  C2   O2    SING  N  N   6  
AF1  C2   H2    SING  N  N   7  
AF1  C3   C4    SING  N  N   8  
AF1  C3   O3    SING  N  N   9  
AF1  C3   H3    SING  N  N  10  
AF1  C4   C5    SING  N  N  11  
AF1  C4   N4    SING  N  N  12  
AF1  C4   H4    SING  N  N  13  
AF1  C5   C6    SING  N  N  14  
AF1  C5   O5    SING  N  N  15  
AF1  C5   H5    SING  N  N  16  
AF1  C6   H61   SING  N  N  17  
AF1  C6   H62   SING  N  N  18  
AF1  C6   H6B   SING  N  N  19  
AF1  O2   HO2   SING  N  N  20  
AF1  O3   HO3   SING  N  N  21  
AF1  N4   C1H   SING  N  N  22  
AF1  N4   HN4   SING  N  N  23  
AF1  C1H  C2H   SING  N  N  24  
AF1  C1H  C6H   SING  N  N  25  
AF1  C1H  H1H   SING  N  N  26  
AF1  C2H  C3H   SING  N  N  27  
AF1  C2H  O2H   SING  N  N  28  
AF1  C2H  H2H   SING  N  N  29  
AF1  C3H  C4H   SING  N  N  30  
AF1  C3H  O3H   SING  N  N  31  
AF1  C3H  H3H   SING  N  N  32  
AF1  C4H  C5H   SING  N  N  33  
AF1  C4H  O4H   SING  N  N  34  
AF1  C4H  H4H   SING  N  N  35  
AF1  C5H  C6H   DOUB  N  N  36  
AF1  C5H  C7H   SING  N  N  37  
AF1  C6H  H6H   SING  N  N  38  
AF1  C7H  O7H   SING  N  N  39  
AF1  C7H  H7H   SING  N  N  40  
AF1  C7H  H7HA  SING  N  N  41  
AF1  O2H  HO2H  SING  N  N  42  
AF1  O3H  HO3H  SING  N  N  43  
AF1  O4H  HO4H  SING  N  N  44  
AF1  O7H  HO7H  SING  N  N  45  
AF1  O1   HO1   SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AF1  SMILES            ACDLabs               10.04  "OC2C(NC1C=C(CO)C(O)C(O)C1O)C(OC(O)C2O)C"  
AF1  SMILES_CANONICAL  CACTVS                3.341  "C[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1N[C@H]2C=C(CO)[C@H](O)[C@H](O)[C@H]2O"  
AF1  SMILES            CACTVS                3.341  "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N[CH]2C=C(CO)[CH](O)[CH](O)[CH]2O"  
AF1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)N[C@H]2C=C(C([C@@H]([C@H]2O)O)O)CO"  
AF1  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)O)O)O)NC2C=C(C(C(C2O)O)O)CO"  
AF1  InChI             InChI                 1.03   "InChI=1S/C13H23NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2,4,6-21H,3H2,1H3/t4-,6+,7-,8?,9+,10+,11+,12-,13-/m1/s1"  
AF1  InChIKey          InChI                 1.03   RBZIIHWPZWOIDU-MKXIPYFISA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AF1  "SYSTEMATIC NAME"  ACDLabs               10.04  "4,6-dideoxy-4-{[(1S,4S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-beta-D-glucopyranose"  
AF1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5S)-6-methyl-5-[[(1S,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)-1-cyclohex-2-enyl]amino]oxane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AF1  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
AF1  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
AF1  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
AF1  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AF1  "Create component"          1999-07-08  RCSB  
AF1  "Modify descriptor"         2011-06-04  RCSB  
AF1  "Other modification"        2020-07-03  RCSB  
AF1  "Modify synonyms"           2020-07-17  RCSB  
AF1  "Modify linking type"       2020-07-17  RCSB  
AF1  "Modify atom id"            2020-07-17  RCSB  
AF1  "Modify component atom id"  2020-07-17  RCSB  
AF1  "Modify leaving atom flag"  2020-07-17  RCSB  
##
