data_DM1
#

_chem_comp.id                                   DM1
_chem_comp.name                                 DAUNOMYCIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C27 H29 N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DAUNORUBICIN
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       527.520
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DM1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1D11
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DM1  C1      C1    C  0  1  Y  N  N  15.076  18.210   5.093  -0.723  -0.349   6.044  C1      DM1   1  
DM1  C2      C2    C  0  1  Y  N  N  16.284  18.936   5.143   0.243   0.085   6.939  C2      DM1   2  
DM1  C3      C3    C  0  1  Y  N  N  17.527  18.293   5.081   1.488   0.476   6.492  C3      DM1   3  
DM1  C4      C4    C  0  1  Y  N  N  17.520  16.910   5.002   1.792   0.441   5.134  C4      DM1   4  
DM1  O4      O4    O  0  1  N  N  N  18.754  16.294   4.969   3.017   0.827   4.699  O4      DM1   5  
DM1  C5      C5    C  0  1  Y  N  N  16.334  16.176   4.980   0.826   0.012   4.221  C5      DM1   6  
DM1  C6      C6    C  0  1  N  N  N  16.306  14.768   4.911   1.126  -0.038   2.777  C6      DM1   7  
DM1  O6      O6    O  0  1  N  N  N  17.462  14.041   4.823   2.273   0.058   2.382  O6      DM1   8  
DM1  C7      C7    C  0  1  Y  N  N  15.089  14.049   4.912   0.018  -0.201   1.818  C7      DM1   9  
DM1  C8      C8    C  0  1  Y  N  N  15.065  12.635   4.850   0.208   0.035   0.459  C8      DM1  10  
DM1  O8      O8    O  0  1  N  N  N  16.272  11.915   4.864   1.428   0.419   0.007  O8      DM1  11  
DM1  C9      C9    C  0  1  Y  N  N  13.847  11.929   4.810  -0.851  -0.118  -0.444  C9      DM1  12  
DM1  C10     C10   C  0  1  N  N  S  13.931  10.456   4.819  -0.569   0.164  -1.897  C10     DM1  13  
DM1  O10     O10   O  0  1  N  N  N  14.546  10.208   6.171   0.699  -0.393  -2.246  O10     DM1  14  
DM1  C11     C11   C  0  1  N  N  N  12.603   9.711   4.699  -1.649  -0.447  -2.785  C11     DM1  15  
DM1  C12     C12   C  0  1  N  N  S  11.442  10.539   5.370  -3.018  -0.005  -2.254  C12     DM1  16  
DM1  O12     O12   O  0  1  N  N  N  11.531  10.603   6.805  -4.038  -0.375  -3.184  O12     DM1  17  
DM1  C13     C13   C  0  1  N  N  N  10.153   9.725   5.149  -3.029   1.487  -2.055  C13     DM1  18  
DM1  O13     O13   O  0  1  N  N  N   9.415  10.008   4.095  -2.773   1.954  -0.971  O13     DM1  19  
DM1  C14     C14   C  0  1  N  N  N   9.798   8.587   6.083  -3.358   2.399  -3.209  C14     DM1  20  
DM1  C15     C15   C  0  1  N  N  N  11.346  11.979   4.813  -3.262  -0.705  -0.918  C15     DM1  21  
DM1  C16     C16   C  0  1  Y  N  N  12.679  12.633   4.852  -2.087  -0.511   0.004  C16     DM1  22  
DM1  C17     C17   C  0  1  Y  N  N  12.674  14.045   4.878  -2.295  -0.754   1.369  C17     DM1  23  
DM1  O17     O17   O  0  1  N  N  N  11.428  14.623   4.847  -3.519  -1.140   1.806  O17     DM1  24  
DM1  C18     C18   C  0  1  Y  N  N  13.866  14.761   4.931  -1.252  -0.601   2.280  C18     DM1  25  
DM1  C19     C19   C  0  1  N  N  N  13.865  16.186   4.984  -1.461  -0.851   3.718  C19     DM1  26  
DM1  O19     O19   O  0  1  N  N  N  12.738  16.887   5.004  -2.460  -1.427   4.104  O19     DM1  27  
DM1  C20     C20   C  0  1  Y  N  N  15.112  16.834   4.999  -0.440  -0.391   4.685  C20     DM1  28  
DM1  C21     C21   C  0  1  N  N  N  19.976  17.161   5.150   3.763   1.211   5.855  C21     DM1  29  
DM1  "C1'"   C1*   C  0  1  N  N  R  15.484   9.139   6.380   1.456   0.653  -2.858  "C1'"   DM1  30  
DM1  "C2'"   C2*   C  0  1  N  N  N  16.539   9.605   7.374   2.919   0.220  -2.976  "C2'"   DM1  31  
DM1  "C3'"   C3*   C  0  1  N  N  S  15.948   9.604   8.804   2.995  -1.062  -3.812  "C3'"   DM1  32  
DM1  "N3'"   N3*   N  0  1  N  N  N  16.975   9.929   9.802   4.402  -1.404  -4.061  "N3'"   DM1  33  
DM1  "C4'"   C4*   C  0  1  N  N  S  15.066   8.368   9.128   2.276  -0.822  -5.144  "C4'"   DM1  34  
DM1  "O4'"   O4*   O  0  1  N  N  N  16.035   7.236   9.128   2.994   0.148  -5.907  "O4'"   DM1  35  
DM1  "C5'"   C5*   C  0  1  N  N  S  14.045   8.040   7.988   0.861  -0.311  -4.862  "C5'"   DM1  36  
DM1  "O5'"   O5*   O  0  1  N  N  N  14.723   7.953   6.669   0.927   0.923  -4.155  "O5'"   DM1  37  
DM1  "C6'"   C6*   C  0  1  N  N  N  13.253   6.745   8.148   0.124  -0.100  -6.186  "C6'"   DM1  38  
DM1  H1      H1    H  0  1  N  N  N  14.098  18.720   5.127  -1.694  -0.654   6.405  H1      DM1  39  
DM1  H2      H2    H  0  1  N  N  N  16.255  20.035   5.232   0.019   0.116   7.995  H2      DM1  40  
DM1  H3      H3    H  0  1  N  N  N  18.476  18.854   5.093   2.231   0.811   7.200  H3      DM1  41  
DM1  HO8     HO8   H  0  1  N  N  N  16.255  10.966   4.822   1.428   1.386  -0.008  HO8     DM1  42  
DM1  H10     H10   H  0  1  N  N  N  14.494  10.079   3.933  -0.542   1.242  -2.054  H10     DM1  43  
DM1  H111    1H11  H  0  0  N  N  N  12.368   9.450   3.640  -1.577  -1.534  -2.755  H111    DM1  44  
DM1  H112    2H11  H  0  0  N  N  N  12.668   8.678   5.113  -1.523  -0.098  -3.810  H112    DM1  45  
DM1  HO12    2HO1  H  0  0  N  N  N  10.831  11.102   7.209  -4.880  -0.095  -2.801  HO12    DM1  46  
DM1  H141    1H14  H  0  0  N  N  N   8.865   7.997   5.923  -3.316   3.436  -2.876  H141    DM1  47  
DM1  H142    2H14  H  0  0  N  N  N  10.658   7.878   6.115  -2.636   2.245  -4.011  H142    DM1  48  
DM1  H143    3H14  H  0  0  N  N  N   9.790   8.979   7.126  -4.360   2.175  -3.574  H143    DM1  49  
DM1  H151    1H15  H  0  0  N  N  N  10.900  12.001   3.791  -3.410  -1.770  -1.093  H151    DM1  50  
DM1  H152    2H15  H  0  0  N  N  N  10.571  12.580   5.343  -4.156  -0.289  -0.454  H152    DM1  51  
DM1  HO17    7HO1  H  0  0  N  N  N  11.424  15.572   4.864  -4.008  -0.333   2.017  HO17    DM1  52  
DM1  H211    1H21  H  0  0  N  N  N  20.973  16.663   5.123   4.761   1.531   5.554  H211    DM1  53  
DM1  H212    2H21  H  0  0  N  N  N  19.956  17.984   4.398   3.255   2.033   6.360  H212    DM1  54  
DM1  H213    3H21  H  0  0  N  N  N  19.879  17.738   6.098   3.843   0.362   6.534  H213    DM1  55  
DM1  "H1'"   H1*   H  0  1  N  N  N  16.096   8.856   5.492   1.392   1.552  -2.246  "H1'"   DM1  56  
DM1  "H2'1"  1H2*  H  0  0  N  N  N  17.474   9.001   7.306   3.494   1.008  -3.463  "H2'1"  DM1  57  
DM1  "H2'2"  2H2*  H  0  0  N  N  N  16.966  10.597   7.097   3.325   0.033  -1.982  "H2'2"  DM1  58  
DM1  "H3'"   H3*   H  0  1  N  N  N  15.205  10.434   8.855   2.510  -1.877  -3.275  "H3'"   DM1  59  
DM1  "HN'1"  1HN*  H  0  0  N  N  N  16.585   9.928  10.744   4.832  -1.539  -3.159  "HN'1"  DM1  60  
DM1  "HN'2"  2HN*  H  0  0  N  N  N  17.439  10.811   9.588   4.404  -2.303  -4.521  "HN'2"  DM1  61  
DM1  "H4'"   H4*   H  0  1  N  N  N  14.496   8.542  10.070   2.222  -1.757  -5.702  "H4'"   DM1  62  
DM1  "HO4'"  *HO4  H  0  0  N  N  N  15.495   6.479   9.326   2.509   0.268  -6.735  "HO4'"  DM1  63  
DM1  "H5'"   H5*   H  0  1  N  N  N  13.326   8.889   8.054   0.324  -1.045  -4.261  "H5'"   DM1  64  
DM1  "H6'1"  1H6*  H  0  0  N  N  N  12.525   6.511   7.335  -0.883   0.263  -5.986  "H6'1"  DM1  65  
DM1  "H6'2"  2H6*  H  0  0  N  N  N  13.953   5.888   8.285   0.662   0.631  -6.789  "H6'2"  DM1  66  
DM1  "H6'3"  3H6*  H  0  0  N  N  N  12.732   6.739   9.134   0.068  -1.045  -6.726  "H6'3"  DM1  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DM1  C1     C2      DOUB  Y  N   1  
DM1  C1     C20     SING  Y  N   2  
DM1  C1     H1      SING  N  N   3  
DM1  C2     C3      SING  Y  N   4  
DM1  C2     H2      SING  N  N   5  
DM1  C3     C4      DOUB  Y  N   6  
DM1  C3     H3      SING  N  N   7  
DM1  C4     O4      SING  N  N   8  
DM1  C4     C5      SING  Y  N   9  
DM1  O4     C21     SING  N  N  10  
DM1  C5     C6      SING  N  N  11  
DM1  C5     C20     DOUB  Y  N  12  
DM1  C6     O6      DOUB  N  N  13  
DM1  C6     C7      SING  N  N  14  
DM1  C7     C8      DOUB  Y  N  15  
DM1  C7     C18     SING  Y  N  16  
DM1  C8     O8      SING  N  N  17  
DM1  C8     C9      SING  Y  N  18  
DM1  O8     HO8     SING  N  N  19  
DM1  C9     C10     SING  N  N  20  
DM1  C9     C16     DOUB  Y  N  21  
DM1  C10    O10     SING  N  N  22  
DM1  C10    C11     SING  N  N  23  
DM1  C10    H10     SING  N  N  24  
DM1  O10    "C1'"   SING  N  N  25  
DM1  C11    C12     SING  N  N  26  
DM1  C11    H111    SING  N  N  27  
DM1  C11    H112    SING  N  N  28  
DM1  C12    O12     SING  N  N  29  
DM1  C12    C13     SING  N  N  30  
DM1  C12    C15     SING  N  N  31  
DM1  O12    HO12    SING  N  N  32  
DM1  C13    O13     DOUB  N  N  33  
DM1  C13    C14     SING  N  N  34  
DM1  C14    H141    SING  N  N  35  
DM1  C14    H142    SING  N  N  36  
DM1  C14    H143    SING  N  N  37  
DM1  C15    C16     SING  N  N  38  
DM1  C15    H151    SING  N  N  39  
DM1  C15    H152    SING  N  N  40  
DM1  C16    C17     SING  Y  N  41  
DM1  C17    O17     SING  N  N  42  
DM1  C17    C18     DOUB  Y  N  43  
DM1  O17    HO17    SING  N  N  44  
DM1  C18    C19     SING  N  N  45  
DM1  C19    O19     DOUB  N  N  46  
DM1  C19    C20     SING  N  N  47  
DM1  C21    H211    SING  N  N  48  
DM1  C21    H212    SING  N  N  49  
DM1  C21    H213    SING  N  N  50  
DM1  "C1'"  "C2'"   SING  N  N  51  
DM1  "C1'"  "O5'"   SING  N  N  52  
DM1  "C1'"  "H1'"   SING  N  N  53  
DM1  "C2'"  "C3'"   SING  N  N  54  
DM1  "C2'"  "H2'1"  SING  N  N  55  
DM1  "C2'"  "H2'2"  SING  N  N  56  
DM1  "C3'"  "N3'"   SING  N  N  57  
DM1  "C3'"  "C4'"   SING  N  N  58  
DM1  "C3'"  "H3'"   SING  N  N  59  
DM1  "N3'"  "HN'1"  SING  N  N  60  
DM1  "N3'"  "HN'2"  SING  N  N  61  
DM1  "C4'"  "O4'"   SING  N  N  62  
DM1  "C4'"  "C5'"   SING  N  N  63  
DM1  "C4'"  "H4'"   SING  N  N  64  
DM1  "O4'"  "HO4'"  SING  N  N  65  
DM1  "C5'"  "O5'"   SING  N  N  66  
DM1  "C5'"  "C6'"   SING  N  N  67  
DM1  "C5'"  "H5'"   SING  N  N  68  
DM1  "C6'"  "H6'1"  SING  N  N  69  
DM1  "C6'"  "H6'2"  SING  N  N  70  
DM1  "C6'"  "H6'3"  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DM1  SMILES            ACDLabs               10.04  "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)CC(O)(C(=O)C)CC5OC4OC(C(O)C(N)C4)C"  
DM1  SMILES_CANONICAL  CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H](N)[C@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)C(C)=O"  
DM1  SMILES            CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH](N)[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)C(C)=O"  
DM1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)C)O)N)O"  
DM1  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)C)O)N)O"  
DM1  InChI             InChI                 1.03   "InChI=1S/C27H29NO10/c1-10-22(30)14(28)7-17(37-10)38-16-9-27(35,11(2)29)8-13-19(16)26(34)21-20(24(13)32)23(31)12-5-4-6-15(36-3)18(12)25(21)33/h4-6,10,14,16-17,22,30,32,34-35H,7-9,28H2,1-3H3/t10-,14-,16-,17-,22+,27-/m0/s1"  
DM1  InChIKey          InChI                 1.03   STQGQHZAVUOBTE-VGBVRHCVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DM1  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,3S)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside"  
DM1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyl-oxan-2-yl]oxy-9-ethanoyl-6,9,11-trihydroxy-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DM1  "Create component"   1999-07-08  RCSB  
DM1  "Modify descriptor"  2011-06-04  RCSB  
DM1  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DM1
_pdbx_chem_comp_synonyms.name        DAUNORUBICIN
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
