data_KB1
# 
_chem_comp.id                                    KB1 
_chem_comp.name                                  "5'-{[(3S)-3-amino-3-carboxypropyl][(4-fluorophenyl)methyl]amino}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 F N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-09 
_chem_comp.pdbx_modified_date                    2017-05-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        475.473 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KB1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ULP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KB1 N6  N1  N 0 1 N N N -6.494 -7.552 30.130 -6.377 -1.833 -2.767 N6  KB1 1  
KB1 C6  C1  C 0 1 Y N N -6.253 -6.857 28.938 -5.913 -0.747 -2.047 C6  KB1 2  
KB1 N1  N2  N 0 1 Y N N -6.271 -7.536 27.768 -6.618 0.378  -1.983 N1  KB1 3  
KB1 C2  C2  C 0 1 Y N N -6.049 -6.844 26.611 -6.182 1.420  -1.298 C2  KB1 4  
KB1 N3  N3  N 0 1 Y N N -5.786 -5.539 26.464 -5.039 1.410  -0.646 N3  KB1 5  
KB1 C4  C3  C 0 1 Y N N -5.774 -4.882 27.634 -4.265 0.329  -0.653 C4  KB1 6  
KB1 C5  C4  C 0 1 Y N N -5.984 -5.483 28.917 -4.687 -0.809 -1.362 C5  KB1 7  
KB1 N7  N4  N 0 1 Y N N -5.892 -4.504 29.910 -3.729 -1.754 -1.207 N7  KB1 8  
KB1 C8  C5  C 0 1 Y N N -5.624 -3.370 29.254 -2.769 -1.280 -0.466 C8  KB1 9  
KB1 N9  N5  N 0 1 Y N N -5.559 -3.545 27.867 -3.056 -0.000 -0.095 N9  KB1 10 
KB1 CBF C6  C 0 1 N N R -5.290 -2.564 26.849 -2.223 0.866  0.743  CBF KB1 11 
KB1 OAU O1  O 0 1 N N N -3.904 -2.267 26.850 -0.844 0.439  0.694  OAU KB1 12 
KB1 CBE C7  C 0 1 N N R -3.676 -1.019 26.219 -0.231 0.995  1.877  CBE KB1 13 
KB1 CAQ C8  C 0 1 N N N -2.505 -0.300 26.917 1.047  0.230  2.224  CAQ KB1 14 
KB1 NBG N6  N 0 1 N N N -2.008 0.898  26.199 2.039  0.426  1.159  NBG KB1 15 
KB1 CAO C9  C 0 1 N N N -1.119 0.406  25.082 3.066  -0.624 1.197  CAO KB1 16 
KB1 CB  C10 C 0 1 N N N -0.615 1.518  24.145 2.486  -1.926 0.641  CB  KB1 17 
KB1 CA  C11 C 0 1 N N S 0.111  0.929  22.957 3.589  -2.984 0.563  CA  KB1 18 
KB1 N   N7  N 0 1 N N N 1.428  0.387  23.401 4.602  -2.562 -0.414 N   KB1 19 
KB1 C   C12 C 0 1 N N N 0.355  1.947  21.821 2.993  -4.300 0.133  C   KB1 20 
KB1 O   O2  O 0 1 N N N 1.521  2.166  21.500 2.360  -5.074 1.028  O   KB1 21 
KB1 OXT O3  O 0 1 N N N -0.668 2.460  21.276 3.085  -4.657 -1.018 OXT KB1 22 
KB1 CAP C13 C 0 1 N N N -1.259 1.792  27.153 2.647  1.760  1.243  CAP KB1 23 
KB1 CAY C14 C 0 1 Y N N -2.166 2.278  28.274 3.469  2.017  0.006  CAY KB1 24 
KB1 CAK C15 C 0 1 Y N N -3.185 3.188  28.009 4.803  1.658  -0.023 CAK KB1 25 
KB1 CAI C16 C 0 1 Y N N -4.045 3.638  29.009 5.558  1.894  -1.157 CAI KB1 26 
KB1 CAW C17 C 0 1 Y N N -3.891 3.155  30.303 4.976  2.489  -2.264 CAW KB1 27 
KB1 FAG F1  F 0 1 N N N -4.709 3.578  31.278 5.712  2.719  -3.373 FAG KB1 28 
KB1 CAJ C18 C 0 1 Y N N -2.891 2.235  30.608 3.639  2.847  -2.233 CAJ KB1 29 
KB1 CAL C19 C 0 1 Y N N -2.049 1.800  29.584 2.885  2.606  -1.100 CAL KB1 30 
KB1 CBC C20 C 0 1 N N S -5.051 -0.263 26.370 -1.286 0.813  2.991  CBC KB1 31 
KB1 OAE O4  O 0 1 N N N -5.619 -0.015 25.101 -1.284 1.938  3.872  OAE KB1 32 
KB1 CBD C21 C 0 1 N N R -5.951 -1.219 27.199 -2.627 0.726  2.228  CBD KB1 33 
KB1 OAF O5  O 0 1 N N N -7.285 -1.195 26.753 -3.493 1.795  2.614  OAF KB1 34 
KB1 H1  H1  H 0 1 N N N -6.656 -8.518 29.927 -7.227 -1.779 -3.232 H1  KB1 35 
KB1 H2  H2  H 0 1 N N N -5.700 -7.467 30.732 -5.852 -2.647 -2.809 H2  KB1 36 
KB1 H3  H3  H 0 1 N N N -6.091 -7.422 25.700 -6.787 2.315  -1.272 H3  KB1 37 
KB1 H4  H4  H 0 1 N N N -5.474 -2.419 29.743 -1.879 -1.823 -0.184 H4  KB1 38 
KB1 H5  H5  H 0 1 N N N -5.633 -2.906 25.861 -2.311 1.904  0.422  H5  KB1 39 
KB1 H6  H6  H 0 1 N N N -3.448 -1.145 25.150 -0.014 2.053  1.730  H6  KB1 40 
KB1 H7  H7  H 0 1 N N N -1.673 -1.013 27.015 1.449  0.602  3.167  H7  KB1 41 
KB1 H8  H8  H 0 1 N N N -2.840 0.012  27.917 0.821  -0.832 2.320  H8  KB1 42 
KB1 H10 H10 H 0 1 N N N -1.687 -0.320 24.482 3.920  -0.319 0.591  H10 KB1 43 
KB1 H11 H11 H 0 1 N N N -0.246 -0.091 25.529 3.388  -0.780 2.226  H11 KB1 44 
KB1 H12 H12 H 0 1 N N N 0.073  2.173  24.700 1.691  -2.279 1.298  H12 KB1 45 
KB1 H13 H13 H 0 1 N N N -1.474 2.106  23.788 2.081  -1.748 -0.355 H13 KB1 46 
KB1 H14 H14 H 0 1 N N N -0.493 0.104  22.552 4.053  -3.098 1.542  H14 KB1 47 
KB1 H15 H15 H 0 1 N N N 1.286  -0.274 24.137 5.373  -3.212 -0.438 H15 KB1 48 
KB1 H16 H16 H 0 1 N N N 1.880  -0.064 22.631 4.196  -2.450 -1.331 H16 KB1 49 
KB1 H18 H18 H 0 1 N N N 1.541  2.782  20.777 1.995  -5.909 0.705  H18 KB1 50 
KB1 H19 H19 H 0 1 N N N -0.419 1.230  27.588 1.862  2.513  1.321  H19 KB1 51 
KB1 H20 H20 H 0 1 N N N -0.872 2.661  26.602 3.289  1.812  2.123  H20 KB1 52 
KB1 H21 H21 H 0 1 N N N -3.313 3.555  27.001 5.257  1.195  0.840  H21 KB1 53 
KB1 H22 H22 H 0 1 N N N -4.822 4.353  28.781 6.601  1.614  -1.180 H22 KB1 54 
KB1 H23 H23 H 0 1 N N N -2.770 1.866  31.616 3.184  3.311  -3.096 H23 KB1 55 
KB1 H24 H24 H 0 1 N N N -1.284 1.072  29.809 1.841  2.882  -1.077 H24 KB1 56 
KB1 H25 H25 H 0 1 N N N -4.892 0.670  26.931 -1.102 -0.107 3.545  H25 KB1 57 
KB1 H26 H26 H 0 1 N N N -6.446 0.440  25.207 -1.928 1.877  4.591  H26 KB1 58 
KB1 H27 H27 H 0 1 N N N -5.856 -1.005 28.274 -3.105 -0.237 2.404  H27 KB1 59 
KB1 H28 H28 H 0 1 N N N -7.806 -1.789 27.280 -3.778 1.756  3.537  H28 KB1 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KB1 OXT C   DOUB N N 1  
KB1 O   C   SING N N 2  
KB1 C   CA  SING N N 3  
KB1 CA  N   SING N N 4  
KB1 CA  CB  SING N N 5  
KB1 CB  CAO SING N N 6  
KB1 CAO NBG SING N N 7  
KB1 OAE CBC SING N N 8  
KB1 NBG CAQ SING N N 9  
KB1 NBG CAP SING N N 10 
KB1 CBE CBC SING N N 11 
KB1 CBE OAU SING N N 12 
KB1 CBE CAQ SING N N 13 
KB1 CBC CBD SING N N 14 
KB1 N3  C2  DOUB Y N 15 
KB1 N3  C4  SING Y N 16 
KB1 C2  N1  SING Y N 17 
KB1 OAF CBD SING N N 18 
KB1 CBF OAU SING N N 19 
KB1 CBF CBD SING N N 20 
KB1 CBF N9  SING N N 21 
KB1 CAP CAY SING N N 22 
KB1 C4  N9  SING Y N 23 
KB1 C4  C5  DOUB Y N 24 
KB1 N1  C6  DOUB Y N 25 
KB1 N9  C8  SING Y N 26 
KB1 CAK CAY DOUB Y N 27 
KB1 CAK CAI SING Y N 28 
KB1 CAY CAL SING Y N 29 
KB1 C5  C6  SING Y N 30 
KB1 C5  N7  SING Y N 31 
KB1 C6  N6  SING N N 32 
KB1 CAI CAW DOUB Y N 33 
KB1 C8  N7  DOUB Y N 34 
KB1 CAL CAJ DOUB Y N 35 
KB1 CAW CAJ SING Y N 36 
KB1 CAW FAG SING N N 37 
KB1 N6  H1  SING N N 38 
KB1 N6  H2  SING N N 39 
KB1 C2  H3  SING N N 40 
KB1 C8  H4  SING N N 41 
KB1 CBF H5  SING N N 42 
KB1 CBE H6  SING N N 43 
KB1 CAQ H7  SING N N 44 
KB1 CAQ H8  SING N N 45 
KB1 CAO H10 SING N N 46 
KB1 CAO H11 SING N N 47 
KB1 CB  H12 SING N N 48 
KB1 CB  H13 SING N N 49 
KB1 CA  H14 SING N N 50 
KB1 N   H15 SING N N 51 
KB1 N   H16 SING N N 52 
KB1 O   H18 SING N N 53 
KB1 CAP H19 SING N N 54 
KB1 CAP H20 SING N N 55 
KB1 CAK H21 SING N N 56 
KB1 CAI H22 SING N N 57 
KB1 CAJ H23 SING N N 58 
KB1 CAL H24 SING N N 59 
KB1 CBC H25 SING N N 60 
KB1 OAE H26 SING N N 61 
KB1 CBD H27 SING N N 62 
KB1 OAF H28 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KB1 SMILES           ACDLabs              12.01 "Nc1ncnc2n(cnc12)C3OC(C(C3O)O)CN(Cc4ccc(cc4)F)CCC(N)C(O)=O" 
KB1 InChI            InChI                1.03  
"InChI=1S/C21H26FN7O5/c22-12-3-1-11(2-4-12)7-28(6-5-13(23)21(32)33)8-14-16(30)17(31)20(34-14)29-10-27-15-18(24)25-9-26-19(15)29/h1-4,9-10,13-14,16-17,20,30-31H,5-8,23H2,(H,32,33)(H2,24,25,26)/t13-,14+,16+,17+,20+/m0/s1" 
KB1 InChIKey         InChI                1.03  UBYUMSGWGXUICY-SWQDORGXSA-N 
KB1 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)Cc4ccc(F)cc4)C(O)=O" 
KB1 SMILES           CACTVS               3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)Cc4ccc(F)cc4)C(O)=O" 
KB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1CN(CC[C@@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)F" 
KB1 SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1CN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)F" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KB1 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(3S)-3-amino-3-carboxypropyl][(4-fluorophenyl)methyl]amino}-5'-deoxyadenosine"                                                                    
KB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(4-fluorophenyl)methyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KB1 "Create component" 2017-02-09 RCSB 
KB1 "Initial release"  2017-05-17 RCSB 
# 
