data_OV1
# 
_chem_comp.id                                    OV1 
_chem_comp.name                                  "N-[(2S)-1-({(2S)-1-{[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]amino}-4-[(R)-methylsulfinyl]-1-oxobutan-2-yl}amino)-3-methyl-1-oxobutan-2-yl]hexanamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H49 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Carmaphycin A, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.738 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OV1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HRD 
_chem_comp.pdbx_subcomponent_list                "6NA VAL SME 04D" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OV1 C4  C4  C 0 1 N N N N N N 58.280 -134.444 34.272 -6.265  0.477  0.570  CA   6NA 1  
OV1 C5  C5  C 0 1 N N N N N N 59.356 -135.237 34.912 -5.012  0.702  -0.236 C    6NA 2  
OV1 O1  O1  O 0 1 N N N N N N 59.315 -136.411 34.935 -5.081  0.831  -1.440 O    6NA 3  
OV1 C1  C1  C 0 1 N N N N N N 57.111 -134.423 35.227 -7.476  0.452  -0.365 CB   6NA 4  
OV1 C2  C2  C 0 1 N N N N N N 55.947 -133.643 34.657 -8.748  0.223  0.454  CG   6NA 5  
OV1 C3  C3  C 0 1 N N N N N N 54.849 -133.534 35.684 -9.959  0.198  -0.482 CD   6NA 6  
OV1 C29 C29 C 0 1 N N N N N N 53.542 -133.360 34.963 -11.231 -0.031 0.337  C6   6NA 7  
OV1 N1  N1  N 0 1 N N N N N N 60.332 -134.598 35.451 -3.815  0.761  0.381  N    VAL 8  
OV1 C6  C6  C 0 1 N N S N N N 61.374 -135.237 36.143 -2.597  0.981  -0.403 CA   VAL 9  
OV1 C10 C10 C 0 1 N N N N N N 60.964 -135.359 37.536 -1.414  0.417  0.340  C    VAL 10 
OV1 O2  O2  O 0 1 N N N N N N 60.386 -134.430 37.983 -1.572  -0.117 1.418  O    VAL 11 
OV1 C7  C7  C 0 1 N N N N N N 62.396 -134.166 36.018 -2.394  2.482  -0.621 CB   VAL 12 
OV1 C8  C8  C 0 1 N N N N N N 63.702 -134.507 36.650 -2.262  3.180  0.734  CG1  VAL 13 
OV1 C9  C9  C 0 1 N N N N N N 62.637 -133.959 34.557 -3.596  3.055  -1.375 CG2  VAL 14 
OV1 N2  N2  N 0 1 N N N N N N 61.234 -136.462 38.220 -0.179  0.504  -0.194 N    SME 15 
OV1 C11 C11 C 0 1 N N S N N N 61.028 -136.572 39.638 0.972   -0.045 0.528  CA   SME 16 
OV1 C12 C12 C 0 1 N N N N N N 60.270 -137.849 39.998 1.103   -1.537 0.219  CB   SME 17 
OV1 C13 C13 C 0 1 N N N N N N 59.181 -138.399 39.074 -0.114  -2.282 0.771  CG   SME 18 
OV1 S1  S1  S 0 1 N N R N N N 59.597 -140.036 38.693 0.043   -4.051 0.405  S    SME 19 
OV1 O8  O8  O 0 1 N N N N N N 59.849 -140.162 37.237 0.030   -4.246 -1.003 OE   SME 20 
OV1 C14 C14 C 0 1 N N N N N N 58.454 -141.187 39.199 -1.467  -4.752 1.125  CE   SME 21 
OV1 C15 C15 C 0 1 N N N N N N 62.318 -136.536 40.403 2.225   0.671  0.094  C    SME 22 
OV1 O3  O3  O 0 1 N N N N N N 63.356 -136.767 39.875 2.163   1.552  -0.737 O    SME 23 
OV1 N3  N3  N 0 1 N N N N N N 62.288 -136.264 41.694 3.414   0.331  0.629  N5   04D 24 
OV1 O4  O4  O 0 1 N N N N N N 62.003 -136.947 44.251 6.028   -0.230 1.722  O6   04D 25 
OV1 O7  O7  O 0 1 N N N N N N 62.725 -139.919 41.875 5.002   -2.360 -2.492 O7   04D 26 
OV1 C16 C16 C 0 1 N N S N N N 63.441 -136.238 42.569 4.645   0.950  0.130  C20  04D 27 
OV1 C17 C17 C 0 1 N N S N N N 63.307 -137.097 43.800 5.816   -0.015 0.326  C21  04D 28 
OV1 C26 C26 C 0 1 N N N N N N 63.514 -133.770 42.200 6.117   2.963  0.287  C23  04D 29 
OV1 C28 C28 C 0 1 N N N N N N 63.616 -132.486 42.946 5.768   3.418  -1.132 C24  04D 30 
OV1 C27 C27 C 0 1 N N N N N N 64.726 -133.912 41.356 6.473   4.181  1.140  C25  04D 31 
OV1 C25 C25 C 0 1 N N N N N N 63.545 -134.876 43.189 4.915   2.243  0.902  C26  04D 32 
OV1 C24 C24 C 0 1 N N N N N N 62.467 -139.275 43.108 5.413   -1.142 -1.868 C27  04D 33 
OV1 C23 C23 C 0 1 N N N N N N 64.810 -138.729 42.643 6.602   -2.359 -0.038 C28  04D 34 
OV1 C22 C22 C 0 1 N N R N N N 63.673 -138.558 43.628 5.498   -1.348 -0.354 C29  04D 35 
OV1 H40 H40 H 0 1 N N N N N N 58.630 -133.419 34.082 -6.193  -0.476 1.096  HAC1 6NA 36 
OV1 H41 H41 H 0 1 N N N N N N 57.982 -134.911 33.322 -6.382  1.283  1.294  HAC2 6NA 37 
OV1 H42 H42 H 0 1 N N N N N N 56.789 -135.457 35.421 -7.549  1.404  -0.890 HBC1 6NA 38 
OV1 H43 H43 H 0 1 N N N N N N 57.428 -133.955 36.171 -7.359  -0.354 -1.089 HBC2 6NA 39 
OV1 H44 H44 H 0 1 N N N N N N 56.286 -132.635 34.377 -8.675  -0.729 0.979  HGC1 6NA 40 
OV1 H45 H45 H 0 1 N N N N N N 55.563 -134.161 33.766 -8.864  1.029  1.178  HGC2 6NA 41 
OV1 H46 H46 H 0 1 N N N N N N 54.818 -134.449 36.294 -10.031 1.151  -1.007 HDC1 6NA 42 
OV1 H47 H47 H 0 1 N N N N N N 55.033 -132.666 36.334 -9.842  -0.608 -1.206 HDC2 6NA 43 
OV1 H48 H48 H 0 1 N N N N N N 52.726 -133.278 35.696 -11.158 -0.983 0.862  H6C1 6NA 44 
OV1 H49 H49 H 0 1 N N N N N N 53.579 -132.446 34.353 -11.347 0.776  1.061  H6C2 6NA 45 
OV1 H50 H50 H 0 1 N N N N N N 53.364 -134.229 34.312 -12.093 -0.048 -0.329 H6C3 6NA 46 
OV1 H39 H39 H 0 1 N N N N N N 60.350 -133.601 35.374 -3.760  0.659  1.344  H    VAL 47 
OV1 H31 H31 H 0 1 N N N N N N 61.696 -136.190 35.698 -2.691  0.483  -1.368 HA   VAL 48 
OV1 H32 H32 H 0 1 N N N N N N 62.008 -133.236 36.459 -1.488  2.645  -1.204 HB   VAL 49 
OV1 H36 H36 H 0 1 N N N N N N 63.557 -134.666 37.729 -1.406  2.772  1.271  HG11 VAL 50 
OV1 H37 H37 H 0 1 N N N N N N 64.101 -135.425 36.195 -2.117  4.249  0.579  HG12 VAL 51 
OV1 H38 H38 H 0 1 N N N N N N 64.412 -133.682 36.493 -3.168  3.017  1.317  HG13 VAL 52 
OV1 H33 H33 H 0 1 N N N N N N 63.391 -133.170 34.417 -4.502  2.891  -0.791 HG21 VAL 53 
OV1 H34 H34 H 0 1 N N N N N N 62.999 -134.896 34.109 -3.451  4.124  -1.530 HG22 VAL 54 
OV1 H35 H35 H 0 1 N N N N N N 61.698 -133.659 34.070 -3.690  2.557  -2.340 HG23 VAL 55 
OV1 H30 H30 H 0 1 N N N N N N 61.597 -137.253 37.727 -0.052  0.930  -1.056 H    SME 56 
OV1 H9  H9  H 0 1 N N N N N N 60.416 -135.720 39.971 0.827   0.093  1.600  HA   SME 57 
OV1 H7  H7  H 0 1 N N N N N N 59.793 -137.667 40.972 2.009   -1.926 0.684  HB2  SME 58 
OV1 H8  H8  H 0 1 N N N N N N 61.024 -138.643 40.102 1.158   -1.681 -0.860 HB3  SME 59 
OV1 H5  H5  H 0 1 N N N N N N 59.133 -137.800 38.153 -1.020  -1.893 0.306  HG2  SME 60 
OV1 H6  H6  H 0 1 N N N N N N 58.206 -138.368 39.583 -0.169  -2.138 1.850  HG3  SME 61 
OV1 H2  H2  H 0 1 N N N N N N 58.135 -141.791 38.337 -1.481  -5.830 0.962  HE1  SME 62 
OV1 H3  H3  H 0 1 N N N N N N 58.905 -141.842 39.959 -1.488  -4.547 2.196  HE2  SME 63 
OV1 H4  H4  H 0 1 N N N N N N 57.582 -140.673 39.629 -2.339  -4.302 0.651  HE3  SME 64 
OV1 H10 H10 H 0 1 N N N N N N 61.397 -136.059 42.100 3.456   -0.322 1.344  HN5  04D 65 
OV1 H29 H29 H 0 1 N N N N N N 61.874 -137.475 45.030 5.266   -0.610 2.181  HO6  04D 66 
OV1 H28 H28 H 0 1 N N N N N N 61.939 -140.362 41.578 4.927   -2.302 -3.454 HO7  04D 67 
OV1 H11 H11 H 0 1 N N N N N N 64.364 -136.487 42.024 4.534   1.176  -0.930 H20  04D 68 
OV1 H21 H21 H 0 1 N N N N N N 63.989 -136.683 44.557 6.717   0.412  -0.117 H21  04D 69 
OV1 H14 H14 H 0 1 N N N N N N 62.598 -133.805 41.592 6.969   2.283  0.251  H23  04D 70 
OV1 H15 H15 H 0 1 N N N N N N 62.726 -132.358 43.580 4.966   4.155  -1.090 H24  04D 71 
OV1 H16 H16 H 0 1 N N N N N N 64.517 -132.499 43.577 6.647   3.863  -1.597 H24A 04D 72 
OV1 H17 H17 H 0 1 N N N N N N 63.680 -131.651 42.232 5.442   2.559  -1.719 H24B 04D 73 
OV1 H18 H18 H 0 1 N N N N N N 64.673 -134.856 40.794 5.622   4.861  1.176  H25  04D 74 
OV1 H19 H19 H 0 1 N N N N N N 64.783 -133.069 40.652 6.722   3.857  2.151  H25A 04D 75 
OV1 H20 H20 H 0 1 N N N N N N 65.620 -133.916 41.997 7.330   4.694  0.702  H25B 04D 76 
OV1 H12 H12 H 0 1 N N N N N N 64.492 -134.819 43.746 4.039   2.888  0.848  H26  04D 77 
OV1 H13 H13 H 0 1 N N N N N N 62.703 -134.745 43.884 5.128   2.006  1.944  H26A 04D 78 
OV1 H26 H26 H 0 1 N N N N N N 61.655 -138.547 42.965 4.689   -0.358 -2.088 H27  04D 79 
OV1 H27 H27 H 0 1 N N N N N N 62.157 -140.030 43.845 6.391   -0.850 -2.250 H27A 04D 80 
OV1 H23 H23 H 0 1 N N N N N N 65.702 -138.205 43.017 7.568   -1.944 -0.327 H28  04D 81 
OV1 H24 H24 H 0 1 N N N N N N 65.036 -139.799 42.526 6.604   -2.572 1.031  H28A 04D 82 
OV1 H25 H25 H 0 1 N N N N N N 64.518 -138.307 41.670 6.422   -3.280 -0.592 H28B 04D 83 
OV1 H22 H22 H 0 1 N N N N N N 63.964 -138.980 44.601 4.544   -1.725 0.015  H29  04D 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OV1 C4  C5  SING N N 1  
OV1 C4  C1  SING N N 2  
OV1 C9  C7  SING N N 3  
OV1 C2  C1  SING N N 4  
OV1 C2  C3  SING N N 5  
OV1 C5  O1  DOUB N N 6  
OV1 C5  N1  SING N N 7  
OV1 C29 C3  SING N N 8  
OV1 N1  C6  SING N N 9  
OV1 C7  C6  SING N N 10 
OV1 C7  C8  SING N N 11 
OV1 C6  C10 SING N N 12 
OV1 O8  S1  DOUB N N 13 
OV1 C10 O2  DOUB N N 14 
OV1 C10 N2  SING N N 15 
OV1 N2  C11 SING N N 16 
OV1 S1  C13 SING N N 17 
OV1 S1  C14 SING N N 18 
OV1 C13 C12 SING N N 19 
OV1 C11 C12 SING N N 20 
OV1 C11 C15 SING N N 21 
OV1 O3  C15 DOUB N N 22 
OV1 C15 N3  SING N N 23 
OV1 C27 C26 SING N N 24 
OV1 N3  C16 SING N N 25 
OV1 O7  C24 SING N N 26 
OV1 C26 C28 SING N N 27 
OV1 C26 C25 SING N N 28 
OV1 C16 C25 SING N N 29 
OV1 C16 C17 SING N N 30 
OV1 C23 C22 SING N N 31 
OV1 C24 C22 SING N N 32 
OV1 C22 C17 SING N N 33 
OV1 C17 O4  SING N N 34 
OV1 C14 H2  SING N N 35 
OV1 C14 H3  SING N N 36 
OV1 C14 H4  SING N N 37 
OV1 C13 H5  SING N N 38 
OV1 C13 H6  SING N N 39 
OV1 C12 H7  SING N N 40 
OV1 C12 H8  SING N N 41 
OV1 C11 H9  SING N N 42 
OV1 N3  H10 SING N N 43 
OV1 C16 H11 SING N N 44 
OV1 C25 H12 SING N N 45 
OV1 C25 H13 SING N N 46 
OV1 C26 H14 SING N N 47 
OV1 C28 H15 SING N N 48 
OV1 C28 H16 SING N N 49 
OV1 C28 H17 SING N N 50 
OV1 C27 H18 SING N N 51 
OV1 C27 H19 SING N N 52 
OV1 C27 H20 SING N N 53 
OV1 C17 H21 SING N N 54 
OV1 C22 H22 SING N N 55 
OV1 C23 H23 SING N N 56 
OV1 C23 H24 SING N N 57 
OV1 C23 H25 SING N N 58 
OV1 C24 H26 SING N N 59 
OV1 C24 H27 SING N N 60 
OV1 O7  H28 SING N N 61 
OV1 O4  H29 SING N N 62 
OV1 N2  H30 SING N N 63 
OV1 C6  H31 SING N N 64 
OV1 C7  H32 SING N N 65 
OV1 C9  H33 SING N N 66 
OV1 C9  H34 SING N N 67 
OV1 C9  H35 SING N N 68 
OV1 C8  H36 SING N N 69 
OV1 C8  H37 SING N N 70 
OV1 C8  H38 SING N N 71 
OV1 N1  H39 SING N N 72 
OV1 C4  H40 SING N N 73 
OV1 C4  H41 SING N N 74 
OV1 C1  H42 SING N N 75 
OV1 C1  H43 SING N N 76 
OV1 C2  H44 SING N N 77 
OV1 C2  H45 SING N N 78 
OV1 C3  H46 SING N N 79 
OV1 C3  H47 SING N N 80 
OV1 C29 H48 SING N N 81 
OV1 C29 H49 SING N N 82 
OV1 C29 H50 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OV1 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)NC(CC(C)C)C(O)C(C)CO)CCS(=O)C)C(NC(=O)CCCCC)C(C)C"                                                                                                                                                     
OV1 InChI            InChI                1.03  "InChI=1S/C25H49N3O6S/c1-8-9-10-11-21(30)28-22(17(4)5)25(33)26-19(12-13-35(7)34)24(32)27-20(14-16(2)3)23(31)18(6)15-29/h16-20,22-23,29,31H,8-15H2,1-7H3,(H,26,33)(H,27,32)(H,28,30)/t18-,19+,20+,22+,23+,35-/m1/s1" 
OV1 InChIKey         InChI                1.03  LBVOFIKOXKWSTC-WFKZTUFRSA-N                                                                                                                                                                                         
OV1 SMILES_CANONICAL CACTVS               3.370 "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC[S@@](C)=O)C(=O)N[C@@H](CC(C)C)[C@@H](O)[C@H](C)CO"                                                                                                                         
OV1 SMILES           CACTVS               3.370 "CCCCCC(=O)N[CH](C(C)C)C(=O)N[CH](CC[S](C)=O)C(=O)N[CH](CC(C)C)[CH](O)[CH](C)CO"                                                                                                                                    
OV1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC[S@](=O)C)C(=O)N[C@@H](CC(C)C)[C@H]([C@H](C)CO)O"                                                                                                                           
OV1 SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCCC(=O)NC(C(C)C)C(=O)NC(CCS(=O)C)C(=O)NC(CC(C)C)C(C(C)CO)O"                                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OV1 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2S)-1-({(2S)-1-{[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]amino}-4-[(R)-methylsulfinyl]-1-oxobutan-2-yl}amino)-3-methyl-1-oxobutan-2-yl]hexanamide"                           
OV1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2S)-1-[[(2S)-1-[[(2R,3S,4S)-2,6-dimethyl-1,3-bis(oxidanyl)heptan-4-yl]amino]-4-[(R)-methylsulfinyl]-1-oxidanylidene-butan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]hexanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OV1 "Create component" 2012-12-10 RCSB 
OV1 "Initial release"  2014-01-29 RCSB 
OV1 "Modify synonyms"  2021-03-13 RCSB 
OV1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      OV1 
_pdbx_chem_comp_synonyms.name         "Carmaphycin A, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 OV1 THR None "Covalent chemical modification" "Amino-acid backbone"   N-terminal     C22 N   ? ? 
2 OV1 THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C17 OG1 ? ? 
# 
