data_PD1
#

_chem_comp.id                                   PD1
_chem_comp.name                                 "1-TERT-BUTYL-3-[6-(3,5-DIMETHOXY-PHENYL)-2-(4-DIETHYLAMINO-BUTYLAMINO)-PYRIDO[2,3-D]PYRIMIDIN-7-YL]-UREA"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H41 N7 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PD 173074"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       523.670
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PD1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2FGI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PD1  C1    C1    C  0  1  N  N  N   9.730   6.054  29.136  -1.835  -1.577  11.144  C1    PD1   1  
PD1  C2    C2    C  0  1  N  N  N  11.162   5.779  28.691  -0.936  -1.394   9.920  C2    PD1   2  
PD1  C3    C3    C  0  1  N  N  N  13.039   4.691  30.838   0.492   1.802  11.143  C3    PD1   3  
PD1  C4    C4    C  0  1  N  N  N  12.867   4.016  29.465   0.326   0.290  10.981  C4    PD1   4  
PD1  C5    C5    C  0  1  N  N  N  10.888   3.313  27.990   0.327   0.120   8.630  C5    PD1   5  
PD1  C6    C6    C  0  1  N  N  N  10.453   3.887  26.656  -0.541   0.087   7.371  C6    PD1   6  
PD1  C7    C7    C  0  1  N  N  N   9.454   2.991  25.973   0.355   0.100   6.131  C7    PD1   7  
PD1  C8    C8    C  0  1  N  N  N   8.950   3.627  24.684  -0.513   0.066   4.872  C8    PD1   8  
PD1  C9    C9    C  0  1  Y  N  N   7.131   3.072  22.905  -0.218   0.053   2.424  C9    PD1   9  
PD1  C10   C10   C  0  1  Y  N  N   5.740   2.215  21.295  -2.139  -0.006   1.144  C10   PD1  10  
PD1  C11   C11   C  0  1  Y  N  N   6.024   3.318  20.486  -1.340   0.004  -0.012  C11   PD1  11  
PD1  C12   C12   C  0  1  Y  N  N   6.900   4.324  20.976   0.071   0.042   0.136  C12   PD1  12  
PD1  C13   C13   C  0  1  Y  N  N   5.477   3.467  19.198  -1.899  -0.020  -1.300  C13   PD1  13  
PD1  C14   C14   C  0  1  Y  N  N   5.821   4.568  18.433  -1.034  -0.006  -2.383  C14   PD1  14  
PD1  C15   C15   C  0  1  Y  N  N   6.683   5.499  18.979   0.357   0.031  -2.159  C15   PD1  15  
PD1  C16   C16   C  0  1  Y  N  N   5.298   4.673  17.153  -1.568  -0.032  -3.766  C16   PD1  16  
PD1  C17   C17   C  0  1  Y  N  N   5.827   3.879  16.133  -2.409   0.986  -4.209  C17   PD1  17  
PD1  C18   C18   C  0  1  Y  N  N   5.320   3.965  14.851  -2.906   0.960  -5.502  C18   PD1  18  
PD1  C19   C19   C  0  1  Y  N  N   4.288   4.807  14.541  -2.567  -0.079  -6.356  C19   PD1  19  
PD1  C20   C20   C  0  1  Y  N  N   3.762   5.589  15.552  -1.730  -1.095  -5.918  C20   PD1  20  
PD1  C21   C21   C  0  1  Y  N  N   4.247   5.534  16.856  -1.225  -1.072  -4.628  C21   PD1  21  
PD1  C22   C22   C  0  1  N  N  N   5.081   2.536  12.802  -4.066   1.648  -7.288  C22   PD1  22  
PD1  C23   C23   C  0  1  N  N  N   1.762   6.211  14.160  -2.061  -1.853  -7.998  C23   PD1  23  
PD1  C24   C24   C  0  1  N  N  N   7.912   7.643  18.498   2.552   0.081  -3.049  C24   PD1  24  
PD1  C25   C25   C  0  1  N  N  N   9.237   8.821  20.228   4.838   0.133  -3.891  C25   PD1  25  
PD1  C26   C26   C  0  1  N  N  N  10.568   8.719  19.551   5.553   0.141  -5.243  C26   PD1  26  
PD1  C27   C27   C  0  1  N  N  N   8.628  10.193  19.949   5.204   1.399  -3.113  C27   PD1  27  
PD1  C28   C28   C  0  1  N  N  N   9.434   8.644  21.706   5.269  -1.098  -3.093  C28   PD1  28  
PD1  N1    N1    N  0  1  N  N  N  11.499   4.326  28.921  -0.528   0.013   9.818  N1    PD1  29  
PD1  N2    N2    N  0  1  N  N  N   7.751   2.959  24.182   0.345   0.079   3.686  N2    PD1  30  
PD1  N3    N3    N  0  1  Y  N  N   6.323   2.094  22.542  -1.544   0.018   2.319  N3    PD1  31  
PD1  N4    N4    N  0  1  Y  N  N   7.429   4.145  22.180   0.580   0.071   1.374  N4    PD1  32  
PD1  N5    N5    N  0  1  Y  N  N   7.190   5.355  20.203   0.858   0.054  -0.940  N5    PD1  33  
PD1  N6    N6    N  0  1  N  N  N   7.070   6.652  18.232   1.219   0.044  -3.246  N6    PD1  34  
PD1  N7    N7    N  0  1  N  N  N   8.360   7.764  19.750   3.389   0.094  -4.105  N7    PD1  35  
PD1  O1    O1    O  0  1  N  N  N   5.857   3.151  13.858  -3.727   1.953  -5.934  O1    PD1  36  
PD1  O2    O2    O  0  1  N  N  N   2.689   6.430  15.261  -1.400  -2.111  -6.758  O2    PD1  37  
PD1  O3    O3    O  0  1  N  N  N   8.225   8.449  17.621   2.999   0.101  -1.919  O3    PD1  38  
PD1  H11   1H1   H  0  1  N  N  N   9.481   7.127  28.966  -2.720  -0.949  11.043  H11   PD1  39  
PD1  H12   2H1   H  0  1  N  N  N   8.999   5.371  28.642  -2.138  -2.621  11.220  H12   PD1  40  
PD1  H13A  3H1   H  0  0  N  N  N   9.552   5.744  30.192  -1.288  -1.291  12.043  H13A  PD1  41  
PD1  H21A  1H2   H  0  0  N  N  N  11.339   6.088  27.634  -0.051  -2.022  10.022  H21A  PD1  42  
PD1  H22   2H2   H  0  1  N  N  N  11.892   6.461  29.184  -1.483  -1.679   9.022  H22   PD1  43  
PD1  H31   1H3   H  0  1  N  N  N  14.052   4.461  31.241   1.152   2.007  11.986  H31   PD1  44  
PD1  H32   2H3   H  0  1  N  N  N  12.840   5.787  30.796   0.925   2.220  10.234  H32   PD1  45  
PD1  H33   3H3   H  0  1  N  N  N  12.228   4.409  31.550  -0.480   2.257  11.324  H33   PD1  46  
PD1  H41   1H4   H  0  1  N  N  N  13.677   4.297  28.752  -0.134  -0.122  11.878  H41   PD1  47  
PD1  H42   2H4   H  0  1  N  N  N  13.065   2.919  29.506   1.303  -0.168  10.830  H42   PD1  48  
PD1  H51   1H5   H  0  1  N  N  N  10.039   2.787  28.485   0.881   1.058   8.664  H51   PD1  49  
PD1  H52   2H5   H  0  1  N  N  N  11.580   2.452  27.839   1.027  -0.714   8.610  H52   PD1  50  
PD1  H61   1H6   H  0  1  N  N  N  10.062   4.925  26.765  -1.147  -0.819   7.371  H61   PD1  51  
PD1  H62   2H6   H  0  1  N  N  N  11.327   4.100  25.998  -1.193   0.960   7.356  H62   PD1  52  
PD1  H71   1H7   H  0  1  N  N  N   9.868   1.971  25.795   0.961   1.006   6.131  H71   PD1  53  
PD1  H72   2H7   H  0  1  N  N  N   8.614   2.715  26.652   1.008  -0.773   6.146  H72   PD1  54  
PD1  H81   1H8   H  0  1  N  N  N   8.781   4.722  24.810  -1.119  -0.839   4.873  H81   PD1  55  
PD1  H82   2H8   H  0  1  N  N  N   9.750   3.661  23.908  -1.165   0.940   4.858  H82   PD1  56  
PD1  H10   H10   H  0  1  N  N  N   5.047   1.430  20.945  -3.216  -0.035   1.070  H10   PD1  57  
PD1  H13   H13   H  0  1  N  N  N   4.777   2.719  18.787  -2.969  -0.050  -1.442  H13   PD1  58  
PD1  H17   H17   H  0  1  N  N  N   6.652   3.177  16.341  -2.674   1.796  -3.544  H17   PD1  59  
PD1  H19   H19   H  0  1  N  N  N   3.893   4.853  13.511  -2.955  -0.097  -7.363  H19   PD1  60  
PD1  H21   H21   H  0  1  N  N  N   3.803   6.165  17.644  -0.574  -1.863  -4.288  H21   PD1  61  
PD1  H221  1H22  H  0  0  N  N  N   5.511   1.883  12.006  -4.727   2.422  -7.680  H221  PD1  62  
PD1  H222  2H22  H  0  0  N  N  N   4.264   1.956  13.292  -3.158   1.607  -7.890  H222  PD1  63  
PD1  H223  3H22  H  0  0  N  N  N   4.524   3.354  12.287  -4.573   0.684  -7.328  H223  PD1  64  
PD1  H231  1H23  H  0  0  N  N  N   0.903   6.883  13.927  -1.825  -2.646  -8.708  H231  PD1  65  
PD1  H232  2H23  H  0  0  N  N  N   2.371   6.123  13.230  -3.138  -1.820  -7.836  H232  PD1  66  
PD1  H233  3H23  H  0  0  N  N  N   1.349   5.181  14.278  -1.724  -0.897  -8.397  H233  PD1  67  
PD1  H261  1H26  H  0  0  N  N  N  11.012   7.717  19.754   6.631   0.170  -5.084  H261  PD1  68  
PD1  H262  2H26  H  0  0  N  N  N  10.503   8.937  18.459   5.292  -0.760  -5.798  H262  PD1  69  
PD1  H263  3H26  H  0  0  N  N  N  11.252   9.550  19.839   5.246   1.019  -5.812  H263  PD1  70  
PD1  H271  1H27  H  0  0  N  N  N   7.636  10.269  20.453   4.897   2.276  -3.681  H271  PD1  71  
PD1  H272  2H27  H  0  0  N  N  N   9.312  11.024  20.237   4.694   1.393  -2.149  H272  PD1  72  
PD1  H273  3H27  H  0  0  N  N  N   8.563  10.411  18.857   6.282   1.428  -2.954  H273  PD1  73  
PD1  H281  1H28  H  0  0  N  N  N   8.442   8.720  22.210   5.008  -2.000  -3.647  H281  PD1  74  
PD1  H282  2H28  H  0  0  N  N  N   9.967   7.697  21.954   6.347  -1.069  -2.933  H282  PD1  75  
PD1  H283  3H28  H  0  0  N  N  N  10.181   9.357  22.125   4.759  -1.104  -2.129  H283  PD1  76  
PD1  HN2   HN2   H  0  1  N  N  N   7.018   3.172  24.858   1.310   0.105   3.785  HN2   PD1  77  
PD1  HN6   HN6   H  0  1  N  N  N   6.190   7.119  18.012   0.862   0.028  -4.148  HN6   PD1  78  
PD1  HN7   HN7   H  0  1  N  N  N   8.020   7.022  20.362   3.032   0.077  -5.007  HN7   PD1  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PD1  C1   C2    SING  N  N   1  
PD1  C1   H11   SING  N  N   2  
PD1  C1   H12   SING  N  N   3  
PD1  C1   H13A  SING  N  N   4  
PD1  C2   N1    SING  N  N   5  
PD1  C2   H21A  SING  N  N   6  
PD1  C2   H22   SING  N  N   7  
PD1  C3   C4    SING  N  N   8  
PD1  C3   H31   SING  N  N   9  
PD1  C3   H32   SING  N  N  10  
PD1  C3   H33   SING  N  N  11  
PD1  C4   N1    SING  N  N  12  
PD1  C4   H41   SING  N  N  13  
PD1  C4   H42   SING  N  N  14  
PD1  C5   C6    SING  N  N  15  
PD1  C5   N1    SING  N  N  16  
PD1  C5   H51   SING  N  N  17  
PD1  C5   H52   SING  N  N  18  
PD1  C6   C7    SING  N  N  19  
PD1  C6   H61   SING  N  N  20  
PD1  C6   H62   SING  N  N  21  
PD1  C7   C8    SING  N  N  22  
PD1  C7   H71   SING  N  N  23  
PD1  C7   H72   SING  N  N  24  
PD1  C8   N2    SING  N  N  25  
PD1  C8   H81   SING  N  N  26  
PD1  C8   H82   SING  N  N  27  
PD1  C9   N2    SING  N  N  28  
PD1  C9   N3    DOUB  Y  N  29  
PD1  C9   N4    SING  Y  N  30  
PD1  C10  C11   DOUB  Y  N  31  
PD1  C10  N3    SING  Y  N  32  
PD1  C10  H10   SING  N  N  33  
PD1  C11  C12   SING  Y  N  34  
PD1  C11  C13   SING  Y  N  35  
PD1  C12  N4    DOUB  Y  N  36  
PD1  C12  N5    SING  Y  N  37  
PD1  C13  C14   DOUB  Y  N  38  
PD1  C13  H13   SING  N  N  39  
PD1  C14  C15   SING  Y  N  40  
PD1  C14  C16   SING  Y  N  41  
PD1  C15  N5    DOUB  Y  N  42  
PD1  C15  N6    SING  N  N  43  
PD1  C16  C17   DOUB  Y  N  44  
PD1  C16  C21   SING  Y  N  45  
PD1  C17  C18   SING  Y  N  46  
PD1  C17  H17   SING  N  N  47  
PD1  C18  C19   DOUB  Y  N  48  
PD1  C18  O1    SING  N  N  49  
PD1  C19  C20   SING  Y  N  50  
PD1  C19  H19   SING  N  N  51  
PD1  C20  C21   DOUB  Y  N  52  
PD1  C20  O2    SING  N  N  53  
PD1  C21  H21   SING  N  N  54  
PD1  C22  O1    SING  N  N  55  
PD1  C22  H221  SING  N  N  56  
PD1  C22  H222  SING  N  N  57  
PD1  C22  H223  SING  N  N  58  
PD1  C23  O2    SING  N  N  59  
PD1  C23  H231  SING  N  N  60  
PD1  C23  H232  SING  N  N  61  
PD1  C23  H233  SING  N  N  62  
PD1  C24  N6    SING  N  N  63  
PD1  C24  N7    SING  N  N  64  
PD1  C24  O3    DOUB  N  N  65  
PD1  C25  C26   SING  N  N  66  
PD1  C25  C27   SING  N  N  67  
PD1  C25  C28   SING  N  N  68  
PD1  C25  N7    SING  N  N  69  
PD1  C26  H261  SING  N  N  70  
PD1  C26  H262  SING  N  N  71  
PD1  C26  H263  SING  N  N  72  
PD1  C27  H271  SING  N  N  73  
PD1  C27  H272  SING  N  N  74  
PD1  C27  H273  SING  N  N  75  
PD1  C28  H281  SING  N  N  76  
PD1  C28  H282  SING  N  N  77  
PD1  C28  H283  SING  N  N  78  
PD1  N2   HN2   SING  N  N  79  
PD1  N6   HN6   SING  N  N  80  
PD1  N7   HN7   SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PD1  SMILES            ACDLabs               10.04  "O=C(NC(C)(C)C)Nc1nc3nc(ncc3cc1c2cc(OC)cc(OC)c2)NCCCCN(CC)CC"  
PD1  SMILES_CANONICAL  CACTVS                3.341  "CCN(CC)CCCCNc1ncc2cc(c(NC(=O)NC(C)(C)C)nc2n1)c3cc(OC)cc(OC)c3"  
PD1  SMILES            CACTVS                3.341  "CCN(CC)CCCCNc1ncc2cc(c(NC(=O)NC(C)(C)C)nc2n1)c3cc(OC)cc(OC)c3"  
PD1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCN(CC)CCCCNc1ncc2cc(c(nc2n1)NC(=O)NC(C)(C)C)c3cc(cc(c3)OC)OC"  
PD1  SMILES            "OpenEye OEToolkits"  1.5.0  "CCN(CC)CCCCNc1ncc2cc(c(nc2n1)NC(=O)NC(C)(C)C)c3cc(cc(c3)OC)OC"  
PD1  InChI             InChI                 1.03   "InChI=1S/C28H41N7O3/c1-8-35(9-2)13-11-10-12-29-26-30-18-20-16-23(19-14-21(37-6)17-22(15-19)38-7)25(31-24(20)32-26)33-27(36)34-28(3,4)5/h14-18H,8-13H2,1-7H3,(H3,29,30,31,32,33,34,36)"  
PD1  InChIKey          InChI                 1.03   DXCUKNQANPLTEJ-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PD1  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-tert-butyl-3-[2-{[4-(diethylamino)butyl]amino}-6-(3,5-dimethoxyphenyl)pyrido[2,3-d]pyrimidin-7-yl]urea"  
PD1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "3-tert-butyl-1-[2-(4-diethylaminobutylamino)-6-(3,5-dimethoxyphenyl)pyrido[6,5-d]pyrimidin-7-yl]urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PD1  "Create component"      1999-07-14  EBI   
PD1  "Modify aromatic_flag"  2011-06-04  RCSB  
PD1  "Modify descriptor"     2011-06-04  RCSB  
PD1  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PD1
_pdbx_chem_comp_synonyms.name        "PD 173074"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
