data_ZP1
#

_chem_comp.id                                   ZP1
_chem_comp.name                                 "(4~{S})-4-[(2~{R})-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-2~{H}-1,3-thiazol-2-yl]-4-[ethoxy(oxidanyl)phosphoryl]-4-oxidanyl-butanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H31 N4 O13 P3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-16
_chem_comp.pdbx_modified_date                   2019-09-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       636.444
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ZP1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R2A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZP1  "N1'"  N1   N  0  1  Y  N  N  39.914  24.626  26.444  -3.585  -4.016  -1.530  "N1'"  ZP1   1  
ZP1  "C2'"  C1   C  0  1  Y  N  N  39.452  24.527  25.182  -2.789  -5.005  -1.176  "C2'"  ZP1   2  
ZP1  CM2    C2   C  0  1  N  N  N  38.125  23.827  24.954  -2.745  -6.249  -2.025  CM2    ZP1   3  
ZP1  "N3'"  N2   N  0  1  Y  N  N  40.080  25.013  24.068  -2.032  -4.936  -0.100  "N3'"  ZP1   4  
ZP1  "C4'"  C3   C  0  1  Y  N  N  41.284  25.655  24.315  -2.046  -3.854   0.672  "C4'"  ZP1   5  
ZP1  "N4'"  N3   N  0  1  N  N  N  41.829  26.277  23.242  -1.247  -3.785   1.802  "N4'"  ZP1   6  
ZP1  "C5'"  C4   C  0  1  Y  N  N  41.871  25.760  25.626  -2.878  -2.787   0.325  "C5'"  ZP1   7  
ZP1  "C6'"  C5   C  0  1  Y  N  N  41.114  25.223  26.647  -3.654  -2.904  -0.811  "C6'"  ZP1   8  
ZP1  "C7'"  C6   C  0  1  N  N  N  43.225  26.399  25.834  -2.927  -1.540   1.169  "C7'"  ZP1   9  
ZP1  N3     N4   N  0  1  N  N  N  44.379  25.716  25.190  -2.029  -0.531   0.603  N3     ZP1  10  
ZP1  C2     C7   C  0  1  N  N  R  44.858  26.089  23.848  -2.428   0.365  -0.496  C2     ZP1  11  
ZP1  S1     S1   S  0  1  N  N  N  46.201  24.927  23.477  -0.917   1.371  -0.743  S1     ZP1  12  
ZP1  C5     C8   C  0  1  N  N  N  45.837  23.870  24.832   0.038   0.580   0.530  C5     ZP1  13  
ZP1  C4     C9   C  0  1  N  N  N  44.818  24.368  25.593  -0.743  -0.339   1.058  C4     ZP1  14  
ZP1  CM4    C10  C  0  1  N  N  N  44.248  23.671  26.806  -0.222  -1.193   2.185  CM4    ZP1  15  
ZP1  C6     C11  C  0  1  N  N  N  46.624  22.630  25.023   1.457   0.898   0.926  C6     ZP1  16  
ZP1  C7     C12  C  0  1  N  N  N  46.307  21.651  23.846   2.423   0.137   0.016  C7     ZP1  17  
ZP1  O7     O1   O  0  1  N  N  N  47.086  20.513  23.919   3.768   0.438   0.391  O7     ZP1  18  
ZP1  PA     P1   P  0  1  N  N  N  46.948  19.392  22.676   5.049  -0.189  -0.356  PA     ZP1  19  
ZP1  O1A    O2   O  0  1  N  N  N  47.805  18.224  23.063   5.079  -1.782  -0.122  O1A    ZP1  20  
ZP1  O2A    O3   O  0  1  N  N  N  45.497  19.096  22.448   4.962   0.095  -1.806  O2A    ZP1  21  
ZP1  O3A    O4   O  0  1  N  N  N  47.499  20.203  21.489   6.393   0.466   0.240  O3A    ZP1  22  
ZP1  PB     P2   P  0  1  N  N  N  49.095  20.768  21.173   7.905   0.602  -0.297  PB     ZP1  23  
ZP1  O1B    O5   O  0  1  N  N  N  49.315  20.538  19.689   7.888   1.023  -1.716  O1B    ZP1  24  
ZP1  O2B    O6   O  0  1  N  N  N  49.976  19.866  22.023   8.689   1.700   0.580  O2B    ZP1  25  
ZP1  O3B    O7   O  0  1  N  N  N  49.111  22.225  21.581   8.649  -0.820  -0.168  O3B    ZP1  26  
ZP1  C11    C13  C  0  1  N  N  S  45.007  27.570  23.377  -3.611   1.242  -0.081  C11    ZP1  27  
ZP1  P4     P3   P  0  1  N  N  N  46.311  28.490  24.252  -3.175   2.178   1.422  P4     ZP1  28  
ZP1  O5     O8   O  0  1  N  N  N  46.076  29.948  23.974  -4.202   3.404   1.607  O5     ZP1  29  
ZP1  O6     O9   O  0  1  N  N  N  47.672  27.956  23.885  -1.797   2.703   1.294  O6     ZP1  30  
ZP1  O8     O10  O  0  1  N  N  N  46.023  28.426  25.901  -3.263   1.206   2.703  O8     ZP1  31  
ZP1  C12    C14  C  0  1  N  N  N  45.522  27.538  21.890  -3.942   2.219  -1.212  C12    ZP1  32  
ZP1  O11    O11  O  0  1  N  N  N  43.799  28.334  23.512  -4.747   0.417   0.184  O11    ZP1  33  
ZP1  C13    C15  C  0  1  N  N  N  44.570  27.228  20.763  -4.186   1.439  -2.505  C13    ZP1  34  
ZP1  C14    C16  C  0  1  N  N  N  43.819  28.496  20.279  -4.512   2.401  -3.618  C14    ZP1  35  
ZP1  O15    O12  O  0  1  N  N  N  43.389  28.451  19.109  -4.547   3.588  -3.399  O15    ZP1  36  
ZP1  O16    O13  O  0  1  N  N  N  43.665  29.505  21.026  -4.765   1.938  -4.852  O16    ZP1  37  
ZP1  C8     C17  C  0  1  N  N  N  47.195  28.384  26.682  -2.851   1.605   4.011  C8     ZP1  38  
ZP1  C9     C18  C  0  1  N  N  N  48.016  29.705  26.690  -2.961   0.414   4.966  C9     ZP1  39  
ZP1  H1     H1   H  0  1  N  N  N  37.887  23.832  23.880  -1.976  -6.140  -2.789  H1     ZP1  40  
ZP1  H2     H2   H  0  1  N  N  N  38.193  22.788  25.309  -2.513  -7.110  -1.397  H2     ZP1  41  
ZP1  H3     H3   H  0  1  N  N  N  37.333  24.353  25.508  -3.714  -6.398  -2.502  H3     ZP1  42  
ZP1  H4     H4   H  0  1  N  N  N  41.237  26.150  22.446  -0.558  -4.451   1.951  H4     ZP1  43  
ZP1  H5     H5   H  0  1  N  N  N  41.923  27.254  23.435  -1.377  -3.070   2.445  H5     ZP1  44  
ZP1  H6     H6   H  0  1  N  N  N  41.496  25.281  27.656  -4.309  -2.100  -1.110  H6     ZP1  45  
ZP1  H7     H7   H  0  1  N  N  N  43.417  26.434  26.917  -3.946  -1.151   1.185  H7     ZP1  46  
ZP1  H8     H8   H  0  1  N  N  N  43.177  27.424  25.437  -2.613  -1.776   2.186  H8     ZP1  47  
ZP1  H9     H9   H  0  1  N  N  N  44.068  25.707  23.184  -2.666  -0.205  -1.395  H9     ZP1  48  
ZP1  H10    H10  H  0  1  N  N  N  43.440  24.282  27.235   0.248  -2.088   1.776  H10    ZP1  49  
ZP1  H11    H11  H  0  1  N  N  N  43.848  22.690  26.511   0.512  -0.628   2.760  H11    ZP1  50  
ZP1  H12    H12  H  0  1  N  N  N  45.041  23.533  27.556  -1.048  -1.482   2.835  H12    ZP1  51  
ZP1  H13    H13  H  0  1  N  N  N  46.350  22.161  25.979   1.630   1.969   0.826  H13    ZP1  52  
ZP1  H14    H14  H  0  1  N  N  N  47.698  22.869  25.027   1.621   0.598   1.962  H14    ZP1  53  
ZP1  H15    H15  H  0  1  N  N  N  46.505  22.161  22.892   2.249  -0.934   0.116  H15    ZP1  54  
ZP1  H16    H16  H  0  1  N  N  N  45.246  21.363  23.894   2.259   0.437  -1.019  H16    ZP1  55  
ZP1  H17    H17  H  0  1  N  N  N  47.271  17.439  23.106   5.135  -2.042   0.808  H17    ZP1  56  
ZP1  H18    H18  H  0  1  N  N  N  50.508  19.318  21.458   9.609   1.834   0.312  H18    ZP1  57  
ZP1  H19    H19  H  0  1  N  N  N  49.261  22.767  20.815   8.697  -1.158   0.736  H19    ZP1  58  
ZP1  H20    H20  H  0  1  N  N  N  46.858  30.328  23.591  -5.126   3.134   1.697  H20    ZP1  59  
ZP1  H21    H21  H  0  1  N  N  N  46.319  26.781  21.848  -4.838   2.783  -0.953  H21    ZP1  60  
ZP1  H22    H22  H  0  1  N  N  N  45.947  28.531  21.681  -3.109   2.907  -1.354  H22    ZP1  61  
ZP1  H23    H23  H  0  1  N  N  N  43.521  28.330  24.420  -5.554   0.911   0.380  H23    ZP1  62  
ZP1  H24    H24  H  0  1  N  N  N  43.833  26.489  21.112  -3.290   0.875  -2.763  H24    ZP1  63  
ZP1  H25    H25  H  0  1  N  N  N  45.140  26.808  19.921  -5.019   0.751  -2.362  H25    ZP1  64  
ZP1  H26    H26  H  0  1  N  N  N  43.189  30.179  20.555  -4.970   2.593  -5.534  H26    ZP1  65  
ZP1  H27    H27  H  0  1  N  N  N  46.908  28.152  27.718  -1.817   1.949   3.978  H27    ZP1  66  
ZP1  H28    H28  H  0  1  N  N  N  47.839  27.582  26.291  -3.491   2.414   4.364  H28    ZP1  67  
ZP1  H29    H29  H  0  1  N  N  N  48.908  29.579  27.322  -2.255  -0.360   4.665  H29    ZP1  68  
ZP1  H30    H30  H  0  1  N  N  N  48.326  29.950  25.663  -2.733   0.739   5.981  H30    ZP1  69  
ZP1  H31    H31  H  0  1  N  N  N  47.395  30.520  27.090  -3.975   0.014   4.932  H31    ZP1  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZP1  O15    C14    DOUB  N  N   1  
ZP1  O1B    PB     DOUB  N  N   2  
ZP1  C14    C13    SING  N  N   3  
ZP1  C14    O16    SING  N  N   4  
ZP1  C13    C12    SING  N  N   5  
ZP1  PB     O3A    SING  N  N   6  
ZP1  PB     O3B    SING  N  N   7  
ZP1  PB     O2B    SING  N  N   8  
ZP1  O3A    PA     SING  N  N   9  
ZP1  C12    C11    SING  N  N  10  
ZP1  O2A    PA     DOUB  N  N  11  
ZP1  PA     O1A    SING  N  N  12  
ZP1  PA     O7     SING  N  N  13  
ZP1  "N4'"  "C4'"  SING  N  N  14  
ZP1  C11    O11    SING  N  N  15  
ZP1  C11    C2     SING  N  N  16  
ZP1  C11    P4     SING  N  N  17  
ZP1  S1     C2     SING  N  N  18  
ZP1  S1     C5     SING  N  N  19  
ZP1  C7     O7     SING  N  N  20  
ZP1  C7     C6     SING  N  N  21  
ZP1  C2     N3     SING  N  N  22  
ZP1  O6     P4     DOUB  N  N  23  
ZP1  O5     P4     SING  N  N  24  
ZP1  "N3'"  "C4'"  DOUB  Y  N  25  
ZP1  "N3'"  "C2'"  SING  Y  N  26  
ZP1  P4     O8     SING  N  N  27  
ZP1  "C4'"  "C5'"  SING  Y  N  28  
ZP1  C5     C6     SING  N  N  29  
ZP1  C5     C4     DOUB  N  N  30  
ZP1  CM2    "C2'"  SING  N  N  31  
ZP1  "C2'"  "N1'"  DOUB  Y  N  32  
ZP1  N3     C4     SING  N  N  33  
ZP1  N3     "C7'"  SING  N  N  34  
ZP1  C4     CM4    SING  N  N  35  
ZP1  "C5'"  "C7'"  SING  N  N  36  
ZP1  "C5'"  "C6'"  DOUB  Y  N  37  
ZP1  O8     C8     SING  N  N  38  
ZP1  "N1'"  "C6'"  SING  Y  N  39  
ZP1  C8     C9     SING  N  N  40  
ZP1  CM2    H1     SING  N  N  41  
ZP1  CM2    H2     SING  N  N  42  
ZP1  CM2    H3     SING  N  N  43  
ZP1  "N4'"  H4     SING  N  N  44  
ZP1  "N4'"  H5     SING  N  N  45  
ZP1  "C6'"  H6     SING  N  N  46  
ZP1  "C7'"  H7     SING  N  N  47  
ZP1  "C7'"  H8     SING  N  N  48  
ZP1  C2     H9     SING  N  N  49  
ZP1  CM4    H10    SING  N  N  50  
ZP1  CM4    H11    SING  N  N  51  
ZP1  CM4    H12    SING  N  N  52  
ZP1  C6     H13    SING  N  N  53  
ZP1  C6     H14    SING  N  N  54  
ZP1  C7     H15    SING  N  N  55  
ZP1  C7     H16    SING  N  N  56  
ZP1  O1A    H17    SING  N  N  57  
ZP1  O2B    H18    SING  N  N  58  
ZP1  O3B    H19    SING  N  N  59  
ZP1  O5     H20    SING  N  N  60  
ZP1  C12    H21    SING  N  N  61  
ZP1  C12    H22    SING  N  N  62  
ZP1  O11    H23    SING  N  N  63  
ZP1  C13    H24    SING  N  N  64  
ZP1  C13    H25    SING  N  N  65  
ZP1  O16    H26    SING  N  N  66  
ZP1  C8     H27    SING  N  N  67  
ZP1  C8     H28    SING  N  N  68  
ZP1  C9     H29    SING  N  N  69  
ZP1  C9     H30    SING  N  N  70  
ZP1  C9     H31    SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZP1  InChI             InChI                 1.03   "InChI=1S/C18H31N4O13P3S/c1-4-33-36(26,27)18(25,7-5-15(23)24)17-22(10-13-9-20-12(3)21-16(13)19)11(2)14(39-17)6-8-34-38(31,32)35-37(28,29)30/h9,17,25H,4-8,10H2,1-3H3,(H,23,24)(H,26,27)(H,31,32)(H2,19,20,21)(H2,28,29,30)/t17-,18+/m1/s1"  
ZP1  InChIKey          InChI                 1.03   XUQXUYTXDQCESE-MSOLQXFVSA-N  
ZP1  SMILES_CANONICAL  CACTVS                3.385  "CCO[P](O)(=O)[C@@](O)(CCC(O)=O)[C@H]1SC(=C(C)N1Cc2cnc(C)nc2N)CCO[P](O)(=O)O[P](O)(O)=O"  
ZP1  SMILES            CACTVS                3.385  "CCO[P](O)(=O)[C](O)(CCC(O)=O)[CH]1SC(=C(C)N1Cc2cnc(C)nc2N)CCO[P](O)(=O)O[P](O)(O)=O"  
ZP1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCOP(=O)([C@@](CCC(=O)O)([C@@H]1N(C(=C(S1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O)O"  
ZP1  SMILES            "OpenEye OEToolkits"  2.0.7  "CCOP(=O)(C(CCC(=O)O)(C1N(C(=C(S1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          ZP1
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(4~{S})-4-[(2~{R})-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-2~{H}-1,3-thiazol-2-yl]-4-[ethoxy(oxidanyl)phosphoryl]-4-oxidanyl-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZP1  "Create component"  2019-03-16  RCSB  
ZP1  "Initial release"   2019-09-11  RCSB  
##
