data_2O2
# 
_chem_comp.id                                    2O2 
_chem_comp.name                                  "1-{2-deoxy-3,5-O-[phenyl(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-[(E)-2-phosphonoethenyl]pyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 N2 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-12-12 
_chem_comp.pdbx_modified_date                    2015-09-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.306 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2O2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NOP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2O2 CAV CAV C 0 1 Y N N -4.853 22.767 29.041 -1.016 0.608  0.990  CAV 2O2 1  
2O2 CAW CAW C 0 1 Y N N -4.642 21.478 28.622 -0.239 0.074  2.001  CAW 2O2 2  
2O2 CAX CAX C 0 1 Y N N -3.697 20.723 29.296 -0.757 -0.907 2.826  CAX 2O2 3  
2O2 CAY CAY C 0 1 Y N N -2.981 21.227 30.376 -2.051 -1.355 2.639  CAY 2O2 4  
2O2 CAZ CAZ C 0 1 Y N N -3.207 22.540 30.809 -2.828 -0.821 1.628  CAZ 2O2 5  
2O2 CAU CAU C 0 1 Y N N -4.170 23.303 30.131 -2.310 0.160  0.803  CAU 2O2 6  
2O2 CAB CAB C 0 1 N N R -4.519 24.749 30.530 -3.159 0.746  -0.296 CAB 2O2 7  
2O2 PAA PAA P 0 1 N N N -5.818 24.692 31.876 -4.474 1.780  0.428  PAA 2O2 8  
2O2 OBB OBB O 0 1 N N N -5.031 24.127 33.099 -3.809 2.973  1.282  OBB 2O2 9  
2O2 OBC OBC O 0 1 N N N -6.433 26.147 32.090 -5.376 2.403  -0.751 OBC 2O2 10 
2O2 OBA OBA O 0 1 N N N -6.871 23.681 31.561 -5.322 0.952  1.314  OBA 2O2 11 
2O2 OAH OAH O 0 1 N N N -4.971 25.355 29.311 -3.741 -0.305 -1.068 OAH 2O2 12 
2O2 OAD OAD O 0 1 N N N -3.359 25.407 30.966 -2.343 1.539  -1.166 OAD 2O2 13 
2O2 CAC CAC C 0 1 N N N -3.473 26.855 31.048 -1.254 0.803  -1.724 CAC 2O2 14 
2O2 CAE CAE C 0 1 N N R -4.073 27.439 29.909 -1.778 -0.380 -2.545 CAE 2O2 15 
2O2 OAF OAF O 0 1 N N N -3.082 27.593 28.895 -0.685 -1.313 -2.689 OAF 2O2 16 
2O2 CAG CAG C 0 1 N N R -5.172 26.750 29.280 -2.835 -1.159 -1.734 CAG 2O2 17 
2O2 CAI CAI C 0 1 N N N -5.086 27.257 27.838 -1.945 -1.938 -0.739 CAI 2O2 18 
2O2 CAJ CAJ C 0 1 N N R -3.618 27.843 27.731 -0.700 -2.247 -1.602 CAJ 2O2 19 
2O2 N1  N1  N 0 1 N N N -2.824 27.089 26.720 0.514  -2.093 -0.798 N1  2O2 20 
2O2 C6  C6  C 0 1 N N N -3.220 25.791 26.203 1.296  -0.988 -0.972 C6  2O2 21 
2O2 C2  C2  C 0 1 N N N -1.725 27.655 26.245 0.832  -3.040 0.100  C2  2O2 22 
2O2 O2  O2  O 0 1 N N N -1.377 28.756 26.665 0.102  -4.005 0.224  O2  2O2 23 
2O2 N3  N3  N 0 1 N N N -1.018 27.096 25.285 1.933  -2.952 0.866  N3  2O2 24 
2O2 C4  C4  C 0 1 N N N -1.357 25.860 24.769 2.761  -1.892 0.750  C4  2O2 25 
2O2 O4  O4  O 0 1 N N N -0.644 25.440 23.872 3.760  -1.805 1.440  O4  2O2 26 
2O2 C5  C5  C 0 1 N N N -2.463 25.171 25.214 2.428  -0.841 -0.223 C5  2O2 27 
2O2 CAR CAR C 0 1 N N N -2.703 23.910 24.591 3.299  0.340  -0.390 CAR 2O2 28 
2O2 CAS CAS C 0 1 N N N -2.977 22.728 25.227 4.448  0.415  0.268  CAS 2O2 29 
2O2 PBD PBD P 0 1 N N N -3.121 21.203 24.447 5.583  1.795  -0.043 PBD 2O2 30 
2O2 OBF OBF O 0 1 N N N -4.711 20.780 24.645 4.949  2.771  -1.155 OBF 2O2 31 
2O2 OBG OBG O 0 1 N N N -2.898 21.298 22.841 5.798  2.550  1.211  OBG 2O2 32 
2O2 OBE OBE O 0 1 N N N -2.197 20.152 25.029 6.992  1.223  -0.573 OBE 2O2 33 
2O2 H1  H1  H 0 1 N N N -5.567 23.382 28.513 -0.613 1.378  0.348  H1  2O2 34 
2O2 H2  H2  H 0 1 N N N -5.196 21.065 27.792 0.772  0.424  2.147  H2  2O2 35 
2O2 H3  H3  H 0 1 N N N -3.510 19.710 28.972 -0.150 -1.324 3.616  H3  2O2 36 
2O2 H4  H4  H 0 1 N N N -2.253 20.608 30.879 -2.455 -2.122 3.283  H4  2O2 37 
2O2 H5  H5  H 0 1 N N N -2.656 22.953 31.641 -3.839 -1.170 1.482  H5  2O2 38 
2O2 H6  H6  H 0 1 N N N -5.398 23.288 33.353 -3.239 3.557  0.764  H6  2O2 39 
2O2 H7  H7  H 0 1 N N N -7.376 26.113 31.977 -6.098 2.966  -0.439 H7  2O2 40 
2O2 H8  H8  H 0 1 N N N -2.464 27.278 31.165 -0.669 1.459  -2.369 H8  2O2 41 
2O2 H9  H9  H 0 1 N N N -4.081 27.107 31.929 -0.622 0.429  -0.920 H9  2O2 42 
2O2 H10 H10 H 0 1 N N N -4.426 28.442 30.189 -2.158 -0.055 -3.514 H10 2O2 43 
2O2 H11 H11 H 0 1 N N N -6.136 27.037 29.726 -3.377 -1.842 -2.387 H11 2O2 44 
2O2 H12 H12 H 0 1 N N N -5.835 28.041 27.653 -1.681 -1.317 0.117  H12 2O2 45 
2O2 H13 H13 H 0 1 N N N -5.232 26.433 27.124 -2.434 -2.857 -0.415 H13 2O2 46 
2O2 H14 H14 H 0 1 N N N -3.664 28.912 27.478 -0.762 -3.264 -1.990 H14 2O2 47 
2O2 H15 H15 H 0 1 N N N -4.105 25.306 26.587 1.021  -0.236 -1.697 H15 2O2 48 
2O2 H16 H16 H 0 1 N N N -0.219 27.576 24.922 2.134  -3.653 1.505  H16 2O2 49 
2O2 H17 H17 H 0 1 N N N -2.665 23.885 23.512 3.000  1.143  -1.048 H17 2O2 50 
2O2 H18 H18 H 0 1 N N N -3.113 22.756 26.298 4.708  -0.346 0.989  H18 2O2 51 
2O2 H19 H19 H 0 1 N N N -5.124 20.691 23.794 4.781  2.342  -2.006 H19 2O2 52 
2O2 H20 H20 H 0 1 N N N -1.678 19.766 24.333 7.649  1.907  -0.760 H20 2O2 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2O2 OBG PBD DOUB N N 1  
2O2 O4  C4  DOUB N N 2  
2O2 PBD OBF SING N N 3  
2O2 PBD OBE SING N N 4  
2O2 PBD CAS SING N N 5  
2O2 CAR C5  SING N N 6  
2O2 CAR CAS DOUB N E 7  
2O2 C4  C5  SING N N 8  
2O2 C4  N3  SING N N 9  
2O2 C5  C6  DOUB N N 10 
2O2 N3  C2  SING N N 11 
2O2 C6  N1  SING N N 12 
2O2 C2  O2  DOUB N N 13 
2O2 C2  N1  SING N N 14 
2O2 N1  CAJ SING N N 15 
2O2 CAJ CAI SING N N 16 
2O2 CAJ OAF SING N N 17 
2O2 CAI CAG SING N N 18 
2O2 CAW CAV DOUB Y N 19 
2O2 CAW CAX SING Y N 20 
2O2 OAF CAE SING N N 21 
2O2 CAV CAU SING Y N 22 
2O2 CAG OAH SING N N 23 
2O2 CAG CAE SING N N 24 
2O2 CAX CAY DOUB Y N 25 
2O2 OAH CAB SING N N 26 
2O2 CAE CAC SING N N 27 
2O2 CAU CAB SING N N 28 
2O2 CAU CAZ DOUB Y N 29 
2O2 CAY CAZ SING Y N 30 
2O2 CAB OAD SING N N 31 
2O2 CAB PAA SING N N 32 
2O2 OAD CAC SING N N 33 
2O2 OBA PAA DOUB N N 34 
2O2 PAA OBC SING N N 35 
2O2 PAA OBB SING N N 36 
2O2 CAV H1  SING N N 37 
2O2 CAW H2  SING N N 38 
2O2 CAX H3  SING N N 39 
2O2 CAY H4  SING N N 40 
2O2 CAZ H5  SING N N 41 
2O2 OBB H6  SING N N 42 
2O2 OBC H7  SING N N 43 
2O2 CAC H8  SING N N 44 
2O2 CAC H9  SING N N 45 
2O2 CAE H10 SING N N 46 
2O2 CAG H11 SING N N 47 
2O2 CAI H12 SING N N 48 
2O2 CAI H13 SING N N 49 
2O2 CAJ H14 SING N N 50 
2O2 C6  H15 SING N N 51 
2O2 N3  H16 SING N N 52 
2O2 CAR H17 SING N N 53 
2O2 CAS H18 SING N N 54 
2O2 OBF H19 SING N N 55 
2O2 OBE H20 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2O2 SMILES           ACDLabs              12.01 "O=P(O)(O)/C=C/C1=CN(C(=O)NC1=O)C4OC2C(OC(OC2)(c3ccccc3)P(=O)(O)O)C4" 
2O2 InChI            InChI                1.03  
"InChI=1S/C18H20N2O11P2/c21-16-11(6-7-32(23,24)25)9-20(17(22)19-16)15-8-13-14(30-15)10-29-18(31-13,33(26,27)28)12-4-2-1-3-5-12/h1-7,9,13-15H,8,10H2,(H,19,21,22)(H2,23,24,25)(H2,26,27,28)/b7-6+/t13-,14-,15-,18-/m1/s1" 
2O2 InChIKey         InChI                1.03  AYSYVLQGVXZPIY-OAIWFRFLSA-N 
2O2 SMILES_CANONICAL CACTVS               3.385 "O[P](O)(=O)/C=C/C1=CN([C@H]2C[C@H]3O[C@](OC[C@H]3O2)(c4ccccc4)[P](O)(O)=O)C(=O)NC1=O" 
2O2 SMILES           CACTVS               3.385 "O[P](O)(=O)C=CC1=CN([CH]2C[CH]3O[C](OC[CH]3O2)(c4ccccc4)[P](O)(O)=O)C(=O)NC1=O" 
2O2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)[C@]2(OC[C@@H]3[C@H](O2)C[C@@H](O3)N4C=C(C(=O)NC4=O)/C=C/P(=O)(O)O)P(=O)(O)O" 
2O2 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C2(OCC3C(O2)CC(O3)N4C=C(C(=O)NC4=O)C=CP(=O)(O)O)P(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2O2 "SYSTEMATIC NAME" ACDLabs              12.01 "1-{2-deoxy-3,5-O-[phenyl(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-[(E)-2-phosphonoethenyl]pyrimidine-2,4(1H,3H)-dione"                                
2O2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,4aR,6R,7aR)-6-[2,4-bis(oxidanylidene)-5-[(E)-2-phosphonoethenyl]pyrimidin-1-yl]-2-phenyl-4a,6,7,7a-tetrahydro-4H-furo[3,2-d][1,3]dioxin-2-yl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2O2 "Create component" 2013-12-12 RCSB 
2O2 "Initial release"  2015-09-09 RCSB 
# 
