data_5F2
# 
_chem_comp.id                                    5F2 
_chem_comp.name                                  "ethyl (2Z,4S)-4-[(N-acetyl-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H29 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.483 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5F2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DPA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5F2 N1  N1  N 0 1 N N N N N N -1.884  -8.680  -3.174 -4.404 3.144  0.713  N1  5F2 1  
5F2 C2  C1  C 0 1 N N S N N N -8.152  -7.334  -1.331 2.078  0.768  -0.305 C2  5F2 2  
5F2 C3  C2  C 0 1 N N N N N N -9.453  -6.605  -1.547 2.764  -0.599 -0.283 C3  5F2 3  
5F2 C4  C3  C 0 1 Y N N N N N -10.507 -7.016  -0.559 4.230  -0.431 -0.588 C4  5F2 4  
5F2 C5  C4  C 0 1 Y N N N N N -10.748 -8.364  -0.253 5.130  -0.221 0.440  C5  5F2 5  
5F2 C6  C5  C 0 1 Y N N N N N -11.776 -8.710  0.634  6.475  -0.066 0.161  C6  5F2 6  
5F2 C7  C6  C 0 1 Y N N N N N -12.547 -7.715  1.226  6.920  -0.122 -1.147 C7  5F2 7  
5F2 C8  C7  C 0 1 Y N N N N N -12.305 -6.363  0.922  6.020  -0.333 -2.175 C8  5F2 8  
5F2 C9  C8  C 0 1 Y N N N N N -11.291 -6.012  0.018  4.676  -0.492 -1.895 C9  5F2 9  
5F2 C19 C9  C 0 1 N N N N N N -6.498  -2.609  -4.615 -3.276 -5.520 1.484  C19 5F2 10 
5F2 C20 C10 C 0 1 N N N N N N -6.445  -7.363  0.419  2.483  1.191  2.060  C20 5F2 11 
5F2 C22 C11 C 0 1 N N N N N N -6.025  -6.788  1.746  3.027  2.044  3.177  C22 5F2 12 
5F2 O3  O1  O 0 1 N N N N N N -6.142  -5.608  -7.324 -1.610 -1.924 0.318  O3  5F2 13 
5F2 C16 C12 C 0 1 N N N N N N -7.010  -5.600  -6.443 -2.340 -2.520 -0.449 C16 5F2 14 
5F2 O2  O2  O 0 1 N N N N N N -7.442  -4.331  -5.900 -2.890 -3.695 -0.080 O2  5F2 15 
5F2 C18 C13 C 0 1 N N N N N N -6.645  -3.164  -6.015 -2.566 -4.186 1.247  C18 5F2 16 
5F2 C15 C14 C 0 1 N N N N N N -7.748  -6.814  -5.882 -2.623 -1.962 -1.778 C15 5F2 17 
5F2 C14 C15 C 0 1 N N N N N N -6.927  -8.084  -5.691 -2.205 -0.737 -2.088 C14 5F2 18 
5F2 C10 C16 C 0 1 N N S N N N -6.006  -7.998  -4.438 -1.631 0.156  -1.018 C10 5F2 19 
5F2 C11 C17 C 0 1 N N N N N N -4.914  -9.074  -4.569 -2.223 1.561  -1.155 C11 5F2 20 
5F2 C12 C18 C 0 1 N N S N N N -4.110  -9.413  -3.306 -3.718 1.518  -0.829 C12 5F2 21 
5F2 C26 C19 C 0 1 N N N N N N -3.986  -8.254  -2.309 -4.478 2.609  -1.623 C26 5F2 22 
5F2 C25 C20 C 0 1 N N N N N N -2.626  -7.618  -2.549 -4.499 3.774  -0.609 C25 5F2 23 
5F2 C13 C21 C 0 1 N N N N N N -2.653  -9.675  -3.601 -3.962 1.878  0.620  C13 5F2 24 
5F2 O1  O3  O 0 1 N N N N N N -2.245  -10.672 -4.158 -3.781 1.135  1.561  O1  5F2 25 
5F2 N   N2  N 0 1 N N N N N N -6.876  -8.108  -3.271 -0.175 0.224  -1.168 N   5F2 26 
5F2 C17 C22 C 0 1 N N N N N N -7.237  -7.064  -2.485 0.593  0.589  -0.122 C17 5F2 27 
5F2 O4  O4  O 0 1 N N N N N N -6.847  -5.908  -2.607 0.089  0.772  0.966  O4  5F2 28 
5F2 N2  N3  N 0 1 N N N N N N -7.602  -6.896  -0.054 2.607  1.597  0.781  N2  5F2 29 
5F2 O21 O5  O 0 1 N N N N N N -5.779  -8.183  -0.185 1.934  0.140  2.312  O21 5F2 30 
5F2 H1  H1  H 0 1 N N N N N N -0.889  -8.670  -3.277 -4.627 3.586  1.547  H1  5F2 31 
5F2 H2  H2  H 0 1 N N N N N N -8.357  -8.414  -1.287 2.270  1.256  -1.261 H2  5F2 32 
5F2 H3  H3  H 0 1 N N N N N N -9.274  -5.524  -1.445 2.647  -1.048 0.703  H3  5F2 33 
5F2 H4  H4  H 0 1 N N N N N N -9.816  -6.822  -2.562 2.309  -1.246 -1.033 H4  5F2 34 
5F2 H5  H5  H 0 1 N N N N N N -10.140 -9.136  -0.702 4.782  -0.177 1.462  H5  5F2 35 
5F2 H6  H6  H 0 1 N N N N N N -11.970 -9.749  0.858  7.178  0.099  0.964  H6  5F2 36 
5F2 H7  H7  H 0 1 N N N N N N -13.332 -7.980  1.919  7.971  -0.001 -1.365 H7  5F2 37 
5F2 H8  H8  H 0 1 N N N N N N -12.902 -5.592  1.386  6.368  -0.376 -3.196 H8  5F2 38 
5F2 H9  H9  H 0 1 N N N N N N -11.117 -4.975  -0.230 3.973  -0.660 -2.698 H9  5F2 39 
5F2 H10 H10 H 0 1 N N N N N N -5.884  -1.696  -4.644 -3.033 -5.890 2.481  H10 5F2 40 
5F2 H11 H11 H 0 1 N N N N N N -7.492  -2.369  -4.209 -4.354 -5.378 1.403  H11 5F2 41 
5F2 H12 H12 H 0 1 N N N N N N -6.011  -3.358  -3.973 -2.948 -6.245 0.738  H12 5F2 42 
5F2 H13 H13 H 0 1 N N N N N N -5.061  -7.224  2.046  2.256  2.737  3.514  H13 5F2 43 
5F2 H14 H14 H 0 1 N N N N N N -5.922  -5.697  1.656  3.329  1.406  4.008  H14 5F2 44 
5F2 H15 H15 H 0 1 N N N N N N -6.786  -7.023  2.505  3.889  2.606  2.819  H15 5F2 45 
5F2 H16 H16 H 0 1 N N N N N N -5.658  -3.416  -6.430 -2.894 -3.462 1.993  H16 5F2 46 
5F2 H17 H17 H 0 1 N N N N N N -7.139  -2.428  -6.666 -1.488 -4.329 1.329  H17 5F2 47 
5F2 H18 H18 H 0 1 N N N N N N -8.798  -6.775  -5.633 -3.171 -2.545 -2.503 H18 5F2 48 
5F2 H20 H20 H 0 1 N N N N N N -6.978  -8.941  -6.346 -2.276 -0.383 -3.106 H20 5F2 49 
5F2 H22 H22 H 0 1 N N N N N N -5.520  -7.011  -4.438 -1.877 -0.248 -0.037 H22 5F2 50 
5F2 H23 H23 H 0 1 N N N N N N -5.400  -10.000 -4.910 -1.720 2.236  -0.464 H23 5F2 51 
5F2 H24 H24 H 0 1 N N N N N N -4.201  -8.731  -5.333 -2.085 1.916  -2.176 H24 5F2 52 
5F2 H25 H25 H 0 1 N N N N N N -4.556  -10.286 -2.806 -4.127 0.532  -1.048 H25 5F2 53 
5F2 H26 H26 H 0 1 N N N N N N -4.785  -7.518  -2.482 -3.932 2.886  -2.526 H26 5F2 54 
5F2 H27 H27 H 0 1 N N N N N N -4.052  -8.632  -1.278 -5.489 2.282  -1.866 H27 5F2 55 
5F2 H28 H28 H 0 1 N N N N N N -2.159  -7.312  -1.601 -5.432 4.332  -0.695 H28 5F2 56 
5F2 H29 H29 H 0 1 N N N N N N -2.708  -6.747  -3.215 -3.648 4.435  -0.775 H29 5F2 57 
5F2 H30 H30 H 0 1 N N N N N N -7.229  -9.013  -3.036 0.236  0.006  -2.019 H30 5F2 58 
5F2 H31 H31 H 0 1 N N N N N N -8.109  -6.223  0.485  3.046  2.438  0.580  H31 5F2 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5F2 O3  C16 DOUB N N 1  
5F2 C16 O2  SING N N 2  
5F2 C16 C15 SING N N 3  
5F2 C18 O2  SING N N 4  
5F2 C18 C19 SING N N 5  
5F2 C15 C14 DOUB N Z 6  
5F2 C14 C10 SING N N 7  
5F2 C11 C10 SING N N 8  
5F2 C11 C12 SING N N 9  
5F2 C10 N   SING N N 10 
5F2 O1  C13 DOUB N N 11 
5F2 C13 C12 SING N N 12 
5F2 C13 N1  SING N N 13 
5F2 C12 C26 SING N N 14 
5F2 N   C17 SING N N 15 
5F2 N1  C25 SING N N 16 
5F2 O4  C17 DOUB N N 17 
5F2 C25 C26 SING N N 18 
5F2 C17 C2  SING N N 19 
5F2 C3  C2  SING N N 20 
5F2 C3  C4  SING N N 21 
5F2 C2  N2  SING N N 22 
5F2 C4  C5  DOUB Y N 23 
5F2 C4  C9  SING Y N 24 
5F2 C5  C6  SING Y N 25 
5F2 O21 C20 DOUB N N 26 
5F2 N2  C20 SING N N 27 
5F2 C9  C8  DOUB Y N 28 
5F2 C20 C22 SING N N 29 
5F2 C6  C7  DOUB Y N 30 
5F2 C8  C7  SING Y N 31 
5F2 N1  H1  SING N N 32 
5F2 C2  H2  SING N N 33 
5F2 C3  H3  SING N N 34 
5F2 C3  H4  SING N N 35 
5F2 C5  H5  SING N N 36 
5F2 C6  H6  SING N N 37 
5F2 C7  H7  SING N N 38 
5F2 C8  H8  SING N N 39 
5F2 C9  H9  SING N N 40 
5F2 C19 H10 SING N N 41 
5F2 C19 H11 SING N N 42 
5F2 C19 H12 SING N N 43 
5F2 C22 H13 SING N N 44 
5F2 C22 H14 SING N N 45 
5F2 C22 H15 SING N N 46 
5F2 C18 H16 SING N N 47 
5F2 C18 H17 SING N N 48 
5F2 C15 H18 SING N N 49 
5F2 C14 H20 SING N N 50 
5F2 C10 H22 SING N N 51 
5F2 C11 H23 SING N N 52 
5F2 C11 H24 SING N N 53 
5F2 C12 H25 SING N N 54 
5F2 C26 H26 SING N N 55 
5F2 C26 H27 SING N N 56 
5F2 C25 H28 SING N N 57 
5F2 C25 H29 SING N N 58 
5F2 N   H30 SING N N 59 
5F2 N2  H31 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5F2 SMILES           ACDLabs              12.01 "N2CCC(CC(/C=C\C(=O)OCC)NC(C(NC(C)=O)Cc1ccccc1)=O)C2=O"                                                                                                                                   
5F2 InChI            InChI                1.03  "InChI=1S/C22H29N3O5/c1-3-30-20(27)10-9-18(14-17-11-12-23-21(17)28)25-22(29)19(24-15(2)26)13-16-7-5-4-6-8-16/h4-10,17-19H,3,11-14H2,1-2H3,(H,23,28)(H,24,26)(H,25,29)/t17-,18+,19-/m0/s1" 
5F2 InChIKey         InChI                1.03  YYPCDXRHVHVVTA-OTWHNJEPSA-N                                                                                                                                                               
5F2 SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)\C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(C)=O"                                                                                                                        
5F2 SMILES           CACTVS               3.385 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(C)=O"                                                                                                                              
5F2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)C"                                                                                                                          
5F2 SMILES           "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5F2 "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (2Z,4S)-4-[(N-acetyl-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"                    
5F2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "ethyl (4S)-4-[[(2S)-2-acetamido-3-phenyl-propanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5F2 "Create component" 2015-09-18 RCSB 
5F2 "Initial release"  2016-03-30 RCSB 
5F2 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5F2 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
