data_5O2
#

_chem_comp.id                                   5O2
_chem_comp.name                                 "6-phenyl-5-[5-[1-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C41 H43 N8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "anti TZ2PA5"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2015-10-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       647.834
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5O2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EHQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5O2  N2   N1   N  1  1  Y  N  N  37.518  24.205   6.423    5.815  -0.213  -0.855  N2   5O2   1  
5O2  C8   C1   C  0  1  Y  N  N  36.747  25.454   8.560    6.066   2.040  -0.021  C8   5O2   2  
5O2  C7   C2   C  0  1  Y  N  N  37.736  25.194   7.461    6.497   0.627  -0.112  C7   5O2   3  
5O2  C6   C3   C  0  1  Y  N  N  38.521  24.044   5.324    6.138  -1.509  -0.991  C6   5O2   4  
5O2  C5   C4   C  0  1  Y  N  N  38.332  23.090   4.208    5.360  -2.347  -1.804  C5   5O2   5  
5O2  C19  C5   C  0  1  Y  N  N  40.520  27.552   8.591    9.531   0.573   2.103  C19  5O2   6  
5O2  C18  C6   C  0  1  Y  N  N  41.492  27.349   7.603    9.908  -0.766   1.992  C18  5O2   7  
5O2  N3   N2   N  0  1  N  N  N  40.759  28.432   9.583   10.280   1.439   2.902  N3   5O2   8  
5O2  C11  C7   C  0  1  Y  N  N  34.952  25.970  10.672    5.271   4.687   0.151  C11  5O2   9  
5O2  C12  C8   C  0  1  Y  N  N  35.203  26.954   9.706    5.331   3.910   1.294  C12  5O2  10  
5O2  C13  C9   C  0  1  Y  N  N  36.084  26.691   8.644    5.727   2.591   1.215  C13  5O2  11  
5O2  C14  C10  C  0  1  Y  N  N  39.035  25.957   7.531    7.680   0.181   0.628  C14  5O2  12  
5O2  C15  C11  C  0  1  Y  N  N  39.322  26.846   8.579    8.423   1.051   1.426  C15  5O2  13  
5O2  C16  C12  C  0  1  Y  N  N  40.062  25.767   6.451    8.071  -1.175   0.525  C16  5O2  14  
5O2  C17  C13  C  0  1  Y  N  N  41.268  26.482   6.530    9.192  -1.632   1.216  C17  5O2  15  
5O2  C10  C14  C  0  1  Y  N  N  35.627  24.743  10.593    5.607   4.147  -1.078  C10  5O2  16  
5O2  C9   C15  C  0  1  Y  N  N  36.551  24.496   9.564    6.004   2.829  -1.170  C9   5O2  17  
5O2  C4   C16  C  0  1  Y  N  N  39.812  24.764   5.366    7.260  -2.054  -0.324  C4   5O2  18  
5O2  C3   C17  C  0  1  Y  N  N  40.775  24.532   4.366    7.579  -3.404  -0.478  C3   5O2  19  
5O2  C2   C18  C  0  1  Y  N  N  40.541  23.621   3.319    6.808  -4.202  -1.273  C2   5O2  20  
5O2  C1   C19  C  0  1  Y  N  N  39.321  22.929   3.223    5.698  -3.678  -1.939  C1   5O2  21  
5O2  N1   N3   N  0  1  N  N  N  39.120  22.063   2.195    4.922  -4.510  -2.748  N1   5O2  22  
5O2  C20  C20  C  0  1  N  N  N  36.151  23.656   6.228    4.637   0.288  -1.568  C20  5O2  23  
5O2  C21  C21  C  0  1  N  N  N  35.900  22.159   6.443    3.387   0.048  -0.718  C21  5O2  24  
5O2  C22  C22  C  0  1  N  N  N  34.951  21.806   7.600    2.145   0.461  -1.511  C22  5O2  25  
5O2  C24  C23  C  0  1  N  N  N  33.843  22.803   7.953    0.895   0.221  -0.661  C24  5O2  26  
5O2  C25  C24  C  0  1  N  N  N  32.534  22.044   8.134   -0.347   0.633  -1.454  C25  5O2  27  
5O2  C26  C25  C  0  1  Y  N  N  31.972  22.118   9.541   -1.578   0.397  -0.617  C26  5O2  28  
5O2  N4   N4   N  0  1  Y  N  N  31.528  21.049  10.252   -1.944  -0.752  -0.038  N4   5O2  29  
5O2  N5   N5   N  0  1  Y  N  N  31.048  21.495  11.487   -3.050  -0.567   0.592  N5   5O2  30  
5O2  N6   N6   N  0  1  Y  N  N  31.206  22.890  11.430   -3.438   0.653   0.459  N6   5O2  31  
5O2  C27  C26  C  0  1  Y  N  N  31.750  23.273  10.282   -2.528   1.307  -0.300  C27  5O2  32  
5O2  C28  C27  C  0  1  N  N  N  30.780  23.658  12.603   -4.654   1.235   1.034  C28  5O2  33  
5O2  C29  C28  C  0  1  N  N  N  30.590  22.733  13.795   -5.867   0.409   0.603  C29  5O2  34  
5O2  N7   N7   N  0  1  N  N  N  29.348  22.972  14.489   -7.086   0.992   1.180  N7   5O2  35  
5O2  C30  C29  C  0  1  Y  N  N  28.180  22.398  14.127   -8.217   0.339   0.715  C30  5O2  36  
5O2  C31  C30  C  0  1  Y  N  N  27.816  20.999  14.520   -8.664  -0.855   1.323  C31  5O2  37  
5O2  C32  C31  C  0  1  Y  N  N  28.666  20.143  15.248   -7.988  -1.424   2.411  C32  5O2  38  
5O2  C33  C32  C  0  1  Y  N  N  26.460  20.491  14.125   -9.826  -1.482   0.812  C33  5O2  39  
5O2  C34  C33  C  0  1  Y  N  N  26.081  19.168  14.439  -10.279  -2.670   1.412  C34  5O2  40  
5O2  C35  C34  C  0  1  Y  N  N  26.985  18.355  15.131   -9.599  -3.196   2.467  C35  5O2  41  
5O2  C36  C35  C  0  1  Y  N  N  28.226  18.845  15.581   -8.456  -2.576   2.967  C36  5O2  42  
5O2  N8   N8   N  0  1  Y  N  N  25.585  21.298  13.495  -10.467  -0.942  -0.225  N8   5O2  43  
5O2  C37  C36  C  0  1  Y  N  N  25.822  22.589  13.162  -10.063   0.173  -0.811  C37  5O2  44  
5O2  C38  C37  C  0  1  N  N  N  24.697  23.341  12.491  -10.877   0.665  -1.982  C38  5O2  45  
5O2  C39  C38  C  0  1  Y  N  N  27.143  23.208  13.408   -8.943   0.848  -0.359  C39  5O2  46  
5O2  C40  C39  C  0  1  N  N  N  27.426  24.629  12.968   -8.455   2.128  -0.984  C40  5O2  47  
5O2  C41  C40  C  0  1  N  N  N  26.156  25.447  12.815   -9.055   2.308  -2.377  C41  5O2  48  
5O2  C42  C41  C  0  1  N  N  N  25.053  24.756  12.038  -10.587   2.139  -2.256  C42  5O2  49  
5O2  H1   H1   H  0  1  N  N  N  37.423  22.510   4.150    4.499  -1.952  -2.322  H1   5O2  50  
5O2  H2   H2   H  0  1  N  N  N  42.434  27.873   7.672   10.777  -1.122   2.526  H2   5O2  51  
5O2  H3   H3   H  0  1  N  N  N  39.973  28.460  10.201   11.059   1.109   3.378  H3   5O2  52  
5O2  H4   H4   H  0  1  N  N  N  41.572  28.149  10.091   10.022   2.371   2.982  H4   5O2  53  
5O2  H5   H5   H  0  1  N  N  N  34.246  26.155  11.469    4.961   5.719   0.218  H5   5O2  54  
5O2  H6   H6   H  0  1  N  N  N  34.718  27.916   9.778    5.068   4.337   2.250  H6   5O2  55  
5O2  H7   H7   H  0  1  N  N  N  36.253  27.443   7.888    5.773   1.985   2.108  H7   5O2  56  
5O2  H8   H8   H  0  1  N  N  N  38.609  26.982   9.379    8.137   2.089   1.515  H8   5O2  57  
5O2  H9   H9   H  0  1  N  N  N  42.020  26.362   5.764    9.492  -2.666   1.138  H9   5O2  58  
5O2  H10  H10  H  0  1  N  N  N  35.434  23.979  11.332    5.558   4.758  -1.967  H10  5O2  59  
5O2  H11  H11  H  0  1  N  N  N  37.108  23.571   9.547    6.266   2.408  -2.130  H11  5O2  60  
5O2  H12  H12  H  0  1  N  N  N  41.714  25.065   4.403    8.436  -3.818   0.032  H12  5O2  61  
5O2  H13  H13  H  0  1  N  N  N  41.309  23.451   2.579    7.060  -5.246  -1.389  H13  5O2  62  
5O2  H14  H14  H  0  1  N  N  N  38.209  21.658   2.273    5.155  -5.447  -2.846  H14  5O2  63  
5O2  H15  H15  H  0  1  N  N  N  39.193  22.554   1.327    4.149  -4.151  -3.213  H15  5O2  64  
5O2  H16  H16  H  0  1  N  N  N  35.488  24.194   6.922    4.751   1.356  -1.752  H16  5O2  65  
5O2  H17  H17  H  0  1  N  N  N  35.860  23.883   5.192    4.536  -0.237  -2.518  H17  5O2  66  
5O2  H18  H18  H  0  1  N  N  N  35.471  21.751   5.516    3.319  -1.009  -0.462  H18  5O2  67  
5O2  H19  H19  H  0  1  N  N  N  36.869  21.678   6.641    3.449   0.640   0.195  H19  5O2  68  
5O2  H20  H20  H  0  1  N  N  N  34.464  20.853   7.344    2.212   1.518  -1.767  H20  5O2  69  
5O2  H21  H21  H  0  1  N  N  N  35.569  21.672   8.500    2.083  -0.132  -2.424  H21  5O2  70  
5O2  H22  H22  H  0  1  N  N  N  34.099  23.324   8.887    0.828  -0.837  -0.405  H22  5O2  71  
5O2  H23  H23  H  0  1  N  N  N  33.735  23.537   7.141    0.957   0.813   0.252  H23  5O2  72  
5O2  H24  H24  H  0  1  N  N  N  31.791  22.465   7.441   -0.280   1.690  -1.711  H24  5O2  73  
5O2  H25  H25  H  0  1  N  N  N  32.709  20.987   7.886   -0.409   0.041  -2.367  H25  5O2  74  
5O2  H26  H26  H  0  1  N  N  N  31.976  24.285   9.982   -2.556   2.346  -0.594  H26  5O2  75  
5O2  H27  H27  H  0  1  N  N  N  31.547  24.409  12.844   -4.579   1.231   2.121  H27  5O2  76  
5O2  H28  H28  H  0  1  N  N  N  29.829  24.164  12.380   -4.768   2.260   0.681  H28  5O2  77  
5O2  H29  H29  H  0  1  N  N  N  30.600  21.692  13.439   -5.942   0.412  -0.484  H29  5O2  78  
5O2  H30  H30  H  0  1  N  N  N  31.422  22.888  14.498   -5.753  -0.616   0.956  H30  5O2  79  
5O2  H31  H31  H  0  1  N  N  N  29.506  22.700  15.438   -7.050   0.980   2.188  H31  5O2  80  
5O2  H32  H32  H  0  1  N  N  N  29.648  20.478  15.549   -7.101  -0.952   2.806  H32  5O2  81  
5O2  H33  H33  H  0  1  N  N  N  25.111  18.790  14.150  -11.164  -3.162   1.038  H33  5O2  82  
5O2  H34  H34  H  0  1  N  N  N  26.724  17.325  15.325   -9.952  -4.109   2.925  H34  5O2  83  
5O2  H35  H35  H  0  1  N  N  N  28.853  18.214  16.193   -7.935  -3.014   3.805  H35  5O2  84  
5O2  H36  H36  H  0  1  N  N  N  23.860  23.409  13.201  -10.626   0.079  -2.866  H36  5O2  85  
5O2  H37  H37  H  0  1  N  N  N  24.382  22.768  11.607  -11.937   0.544  -1.758  H37  5O2  86  
5O2  H38  H38  H  0  1  N  N  N  27.949  24.603  12.001   -8.746   2.969  -0.355  H38  5O2  87  
5O2  H39  H39  H  0  1  N  N  N  28.069  25.111  13.719   -7.368   2.098  -1.063  H39  5O2  88  
5O2  H40  H40  H  0  1  N  N  N  26.410  26.382  12.293   -8.828   3.307  -2.749  H40  5O2  89  
5O2  H41  H41  H  0  1  N  N  N  25.774  25.680  13.820   -8.642   1.561  -3.055  H41  5O2  90  
5O2  H42  H42  H  0  1  N  N  N  25.366  24.703  10.985  -11.061   2.437  -3.192  H42  5O2  91  
5O2  H43  H43  H  0  1  N  N  N  24.146  25.373  12.120  -10.972   2.747  -1.437  H43  5O2  92  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5O2  N1   C1   SING  N  N   1  
5O2  C1   C2   DOUB  Y  N   2  
5O2  C1   C5   SING  Y  N   3  
5O2  C2   C3   SING  Y  N   4  
5O2  C5   C6   DOUB  Y  N   5  
5O2  C3   C4   DOUB  Y  N   6  
5O2  C6   C4   SING  Y  N   7  
5O2  C6   N2   SING  Y  N   8  
5O2  C4   C16  SING  Y  N   9  
5O2  C20  N2   SING  N  N  10  
5O2  C20  C21  SING  N  N  11  
5O2  N2   C7   DOUB  Y  N  12  
5O2  C21  C22  SING  N  N  13  
5O2  C16  C17  DOUB  Y  N  14  
5O2  C16  C14  SING  Y  N  15  
5O2  C17  C18  SING  Y  N  16  
5O2  C7   C14  SING  Y  N  17  
5O2  C7   C8   SING  N  N  18  
5O2  C14  C15  DOUB  Y  N  19  
5O2  C22  C24  SING  N  N  20  
5O2  C18  C19  DOUB  Y  N  21  
5O2  C24  C25  SING  N  N  22  
5O2  C25  C26  SING  N  N  23  
5O2  C8   C13  DOUB  Y  N  24  
5O2  C8   C9   SING  Y  N  25  
5O2  C15  C19  SING  Y  N  26  
5O2  C19  N3   SING  N  N  27  
5O2  C13  C12  SING  Y  N  28  
5O2  C26  N4   SING  Y  N  29  
5O2  C26  C27  DOUB  Y  N  30  
5O2  C9   C10  DOUB  Y  N  31  
5O2  C12  C11  DOUB  Y  N  32  
5O2  N4   N5   DOUB  Y  N  33  
5O2  C27  N6   SING  Y  N  34  
5O2  C10  C11  SING  Y  N  35  
5O2  N6   N5   SING  Y  N  36  
5O2  N6   C28  SING  N  N  37  
5O2  C42  C38  SING  N  N  38  
5O2  C42  C41  SING  N  N  39  
5O2  C38  C37  SING  N  N  40  
5O2  C28  C29  SING  N  N  41  
5O2  C41  C40  SING  N  N  42  
5O2  C40  C39  SING  N  N  43  
5O2  C37  C39  DOUB  Y  N  44  
5O2  C37  N8   SING  Y  N  45  
5O2  C39  C30  SING  Y  N  46  
5O2  N8   C33  DOUB  Y  N  47  
5O2  C29  N7   SING  N  N  48  
5O2  C33  C34  SING  Y  N  49  
5O2  C33  C31  SING  Y  N  50  
5O2  C30  N7   SING  N  N  51  
5O2  C30  C31  DOUB  Y  N  52  
5O2  C34  C35  DOUB  Y  N  53  
5O2  C31  C32  SING  Y  N  54  
5O2  C35  C36  SING  Y  N  55  
5O2  C32  C36  DOUB  Y  N  56  
5O2  C5   H1   SING  N  N  57  
5O2  C18  H2   SING  N  N  58  
5O2  N3   H3   SING  N  N  59  
5O2  N3   H4   SING  N  N  60  
5O2  C11  H5   SING  N  N  61  
5O2  C12  H6   SING  N  N  62  
5O2  C13  H7   SING  N  N  63  
5O2  C15  H8   SING  N  N  64  
5O2  C17  H9   SING  N  N  65  
5O2  C10  H10  SING  N  N  66  
5O2  C9   H11  SING  N  N  67  
5O2  C3   H12  SING  N  N  68  
5O2  C2   H13  SING  N  N  69  
5O2  N1   H14  SING  N  N  70  
5O2  N1   H15  SING  N  N  71  
5O2  C20  H16  SING  N  N  72  
5O2  C20  H17  SING  N  N  73  
5O2  C21  H18  SING  N  N  74  
5O2  C21  H19  SING  N  N  75  
5O2  C22  H20  SING  N  N  76  
5O2  C22  H21  SING  N  N  77  
5O2  C24  H22  SING  N  N  78  
5O2  C24  H23  SING  N  N  79  
5O2  C25  H24  SING  N  N  80  
5O2  C25  H25  SING  N  N  81  
5O2  C27  H26  SING  N  N  82  
5O2  C28  H27  SING  N  N  83  
5O2  C28  H28  SING  N  N  84  
5O2  C29  H29  SING  N  N  85  
5O2  C29  H30  SING  N  N  86  
5O2  N7   H31  SING  N  N  87  
5O2  C32  H32  SING  N  N  88  
5O2  C34  H33  SING  N  N  89  
5O2  C35  H34  SING  N  N  90  
5O2  C36  H35  SING  N  N  91  
5O2  C38  H36  SING  N  N  92  
5O2  C38  H37  SING  N  N  93  
5O2  C40  H38  SING  N  N  94  
5O2  C40  H39  SING  N  N  95  
5O2  C41  H40  SING  N  N  96  
5O2  C41  H41  SING  N  N  97  
5O2  C42  H42  SING  N  N  98  
5O2  C42  H43  SING  N  N  99  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5O2  InChI             InChI                 1.03   "InChI=1S/C41H42N8/c42-29-18-20-32-33-21-19-30(43)26-39(33)49(41(36(32)25-29)28-11-3-1-4-12-28)23-10-2-5-13-31-27-48(47-46-31)24-22-44-40-34-14-6-8-16-37(34)45-38-17-9-7-15-35(38)40/h1,3-4,6,8,11-12,14,16,18-21,25-27,43H,2,5,7,9-10,13,15,17,22-24,42H2,(H,44,45)/p+1"  
5O2  InChIKey          InChI                 1.03   XIORYVGXAQRYQA-UHFFFAOYSA-O  
5O2  SMILES_CANONICAL  CACTVS                3.385  "Nc1ccc2c3ccc(N)cc3[n+](CCCCCc4cn(CCNc5c6CCCCc6nc7ccccc57)nn4)c(c8ccccc8)c2c1"  
5O2  SMILES            CACTVS                3.385  "Nc1ccc2c3ccc(N)cc3[n+](CCCCCc4cn(CCNc5c6CCCCc6nc7ccccc57)nn4)c(c8ccccc8)c2c1"  
5O2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "c1ccc(cc1)c2c3cc(ccc3c4ccc(cc4[n+]2CCCCCc5cn(nn5)CCNc6c7ccccc7nc8c6CCCC8)N)N"  
5O2  SMILES            "OpenEye OEToolkits"  2.0.4  "c1ccc(cc1)c2c3cc(ccc3c4ccc(cc4[n+]2CCCCCc5cn(nn5)CCNc6c7ccccc7nc8c6CCCC8)N)N"  
#
_pdbx_chem_comp_identifier.comp_id          5O2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "6-phenyl-5-[5-[1-[2-(1,2,3,4-tetrahydroacridin-9-ylamino)ethyl]-1,2,3-triazol-4-yl]pentyl]phenanthridin-5-ium-3,8-diamine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5O2  "Create component"  2015-10-29  EBI   
5O2  "Initial release"   2016-01-20  RCSB  
5O2  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5O2
_pdbx_chem_comp_synonyms.name        "anti TZ2PA5"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
