data_HD2
# 
_chem_comp.id                                    HD2 
_chem_comp.name                                  "4-cyclopentyl-N-[(1S,3R)-5-oxidanyl-2-adamantyl]-2-[[(3S)-oxolan-3-yl]amino]pyrimidine-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H34 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-20 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.552 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HD2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BB5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HD2 C1   C1   C 0 1 Y N N -13.130 -2.610 -78.155 1.093  0.929  0.008  C1   HD2 1  
HD2 C2   C2   C 0 1 Y N N -14.010 -1.826 -77.447 0.645  -0.390 -0.146 C2   HD2 2  
HD2 C3   C3   C 0 1 Y N N -14.517 -0.703 -78.075 1.596  -1.418 -0.151 C3   HD2 3  
HD2 N4   N4   N 0 1 Y N N -14.152 -0.398 -79.322 2.872  -1.110 -0.012 N4   HD2 4  
HD2 C5   C5   C 0 1 Y N N -13.313 -1.229 -79.949 3.257  0.152  0.132  C5   HD2 5  
HD2 N6   N6   N 0 1 Y N N -12.770 -2.329 -79.409 2.386  1.153  0.141  N6   HD2 6  
HD2 N7   N7   N 0 1 N N N -12.929 -0.881 -81.244 4.600  0.430  0.275  N7   HD2 7  
HD2 C8   C8   C 0 1 N N N -15.454 0.274  -77.444 1.170  -2.854 -0.312 C8   HD2 8  
HD2 C9   C9   C 0 1 N N N -16.828 0.161  -78.067 1.046  -3.539 1.065  C9   HD2 9  
HD2 C10  C10  C 0 1 N N N -17.302 1.567  -78.316 1.559  -4.979 0.888  C10  HD2 10 
HD2 C11  C11  C 0 1 N N N -16.104 2.496  -78.188 1.975  -5.119 -0.591 C11  HD2 11 
HD2 C12  C12  C 0 1 N N N -14.935 1.673  -77.698 2.267  -3.667 -1.043 C12  HD2 12 
HD2 C13  C13  C 0 1 N N N -14.340 -2.223 -76.079 -0.792 -0.688 -0.298 C13  HD2 13 
HD2 O14  O14  O 0 1 N N N -13.431 -2.423 -75.279 -1.175 -1.842 -0.316 O14  HD2 14 
HD2 N15  N15  N 0 1 N N N -15.697 -2.343 -75.883 -1.681 0.319  -0.417 N15  HD2 15 
HD2 C16  C16  C 0 1 N N N -16.228 -2.818 -74.636 -3.107 0.023  -0.568 C16  HD2 16 
HD2 C17  C17  C 0 1 N N R -17.548 -3.585 -74.814 -3.797 1.187  -1.281 C17  HD2 17 
HD2 C18  C18  C 0 1 N N N -18.709 -2.622 -75.087 -3.626 2.464  -0.456 C18  HD2 18 
HD2 C19  C19  C 0 1 N N N -18.841 -1.612 -73.935 -4.255 2.268  0.925  C19  HD2 19 
HD2 C20  C20  C 0 1 N N N -17.536 -0.796 -73.843 -3.565 1.103  1.638  C20  HD2 20 
HD2 C21  C21  C 0 1 N N S -16.353 -1.730 -73.550 -3.736 -0.174 0.813  C21  HD2 21 
HD2 C22  C22  C 0 1 N N N -16.614 -2.444 -72.222 -5.227 -0.483 0.656  C22  HD2 22 
HD2 C23  C23  C 0 1 N N N -17.898 -3.289 -72.341 -5.916 0.681  -0.058 C23  HD2 23 
HD2 C24  C24  C 0 1 N N N -19.097 -2.366 -72.617 -5.745 1.959  0.767  C24  HD2 24 
HD2 C25  C25  C 0 1 N N N -17.801 -4.308 -73.486 -5.287 0.878  -1.439 C25  HD2 25 
HD2 O26  O26  O 0 1 N N N -18.033 -4.030 -71.131 -7.308 0.393  -0.205 O26  HD2 26 
HD2 C27  C27  C 0 1 N N S -13.881 -1.050 -82.322 5.048  1.816  0.434  C27  HD2 27 
HD2 C28  C28  C 0 1 N N N -15.335 -1.202 -81.963 6.403  1.865  1.174  C28  HD2 28 
HD2 C29  C29  C 0 1 N N N -16.058 -0.260 -82.868 7.363  2.522  0.158  C29  HD2 29 
HD2 O30  O30  O 0 1 N N N -15.099 0.311  -83.750 6.505  3.285  -0.719 O30  HD2 30 
HD2 C31  C31  C 0 1 N N N -13.812 0.188  -83.154 5.349  2.449  -0.943 C31  HD2 31 
HD2 H1   H1   H 0 1 N N N -12.715 -3.486 -77.679 0.391  1.749  0.012  H1   HD2 32 
HD2 H8   H8   H 0 1 N N N -15.519 0.091  -76.361 0.225  -2.912 -0.853 H8   HD2 33 
HD2 H7   H7   H 0 1 N N N -12.674 0.086  -81.225 5.248  -0.292 0.270  H7   HD2 34 
HD2 H27  H27  H 0 1 N N N -13.581 -1.909 -82.941 4.299  2.399  0.969  H27  HD2 35 
HD2 H91C H91C H 0 0 N N N -16.771 -0.394 -79.015 1.657  -3.013 1.799  H91C HD2 36 
HD2 H92C H92C H 0 0 N N N -17.515 -0.356 -77.381 0.004  -3.550 1.385  H92C HD2 37 
HD2 H121 H121 H 0 0 N N N -14.535 2.102  -76.768 2.164  -3.571 -2.124 H121 HD2 38 
HD2 H122 H122 H 0 0 N N N -14.143 1.649  -78.461 3.260  -3.354 -0.719 H122 HD2 39 
HD2 H101 H101 H 0 0 N N N -17.728 1.644  -79.327 2.418  -5.152 1.536  H101 HD2 40 
HD2 H102 H102 H 0 0 N N N -18.067 1.840  -77.574 0.765  -5.689 1.121  H102 HD2 41 
HD2 H111 H111 H 0 0 N N N -15.867 2.938  -79.167 2.872  -5.734 -0.678 H111 HD2 42 
HD2 H112 H112 H 0 0 N N N -16.326 3.297  -77.468 1.161  -5.545 -1.178 H112 HD2 43 
HD2 H15  H15  H 0 1 N N N -16.324 -2.095 -76.622 -1.375 1.239  -0.402 H15  HD2 44 
HD2 H16  H16  H 0 1 N N N -15.509 -3.550 -74.241 -3.230 -0.887 -1.155 H16  HD2 45 
HD2 H17  H17  H 0 1 N N N -17.457 -4.314 -75.633 -3.349 1.327  -2.265 H17  HD2 46 
HD2 H21  H21  H 0 1 N N N -15.420 -1.150 -73.491 -3.245 -1.004 1.322  H21  HD2 47 
HD2 H181 H181 H 0 0 N N N -18.519 -2.080 -76.025 -2.564 2.684  -0.344 H181 HD2 48 
HD2 H182 H182 H 0 0 N N N -19.644 -3.195 -75.177 -4.117 3.294  -0.965 H182 HD2 49 
HD2 H251 H251 H 0 0 N N N -18.743 -4.872 -73.552 -5.779 1.707  -1.947 H251 HD2 50 
HD2 H252 H252 H 0 0 N N N -16.972 -5.002 -73.286 -5.409 -0.032 -2.026 H252 HD2 51 
HD2 H19  H19  H 0 1 N N N -19.683 -0.933 -74.138 -4.133 3.177  1.512  H19  HD2 52 
HD2 H201 H201 H 0 0 N N N -17.363 -0.277 -74.797 -2.503 1.323  1.750  H201 HD2 53 
HD2 H202 H202 H 0 0 N N N -17.625 -0.056 -73.034 -4.013 0.963  2.622  H202 HD2 54 
HD2 H241 H241 H 0 0 N N N -19.208 -1.646 -71.793 -6.193 1.818  1.751  H241 HD2 55 
HD2 H242 H242 H 0 0 N N N -20.015 -2.966 -72.705 -6.236 2.788  0.259  H242 HD2 56 
HD2 H221 H221 H 0 0 N N N -15.763 -3.100 -71.984 -5.349 -1.393 0.068  H221 HD2 57 
HD2 H222 H222 H 0 0 N N N -16.737 -1.699 -71.422 -5.675 -0.623 1.639  H222 HD2 58 
HD2 H26  H26  H 0 1 N N N -18.818 -4.564 -71.172 -7.809 1.089  -0.651 H26  HD2 59 
HD2 H281 H281 H 0 0 N N N -15.669 -2.236 -82.134 6.324  2.475  2.075  H281 HD2 60 
HD2 H282 H282 H 0 0 N N N -15.503 -0.932 -80.910 6.740  0.859  1.422  H282 HD2 61 
HD2 H311 H311 H 0 0 N N N -13.593 1.063  -82.525 5.577  1.674  -1.675 H311 HD2 62 
HD2 H312 H312 H 0 0 N N N -13.037 0.090  -83.928 4.504  3.051  -1.276 H312 HD2 63 
HD2 H291 H291 H 0 0 N N N -16.820 -0.805 -83.445 8.064  3.181  0.669  H291 HD2 64 
HD2 H292 H292 H 0 0 N N N -16.542 0.531  -82.277 7.899  1.759  -0.406 H292 HD2 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HD2 C1  C2   SING Y N 1  
HD2 C1  N6   DOUB Y N 2  
HD2 C2  C3   DOUB Y N 3  
HD2 C2  C13  SING N N 4  
HD2 C3  N4   SING Y N 5  
HD2 C3  C8   SING N N 6  
HD2 N4  C5   DOUB Y N 7  
HD2 C5  N6   SING Y N 8  
HD2 C5  N7   SING N N 9  
HD2 N7  C27  SING N N 10 
HD2 C8  C9   SING N N 11 
HD2 C8  C12  SING N N 12 
HD2 C9  C10  SING N N 13 
HD2 C10 C11  SING N N 14 
HD2 C11 C12  SING N N 15 
HD2 C13 O14  DOUB N N 16 
HD2 C13 N15  SING N N 17 
HD2 N15 C16  SING N N 18 
HD2 C16 C17  SING N N 19 
HD2 C16 C21  SING N N 20 
HD2 C17 C18  SING N N 21 
HD2 C17 C25  SING N N 22 
HD2 C18 C19  SING N N 23 
HD2 C19 C20  SING N N 24 
HD2 C19 C24  SING N N 25 
HD2 C20 C21  SING N N 26 
HD2 C21 C22  SING N N 27 
HD2 C22 C23  SING N N 28 
HD2 C23 C24  SING N N 29 
HD2 C23 C25  SING N N 30 
HD2 C23 O26  SING N N 31 
HD2 C27 C28  SING N N 32 
HD2 C27 C31  SING N N 33 
HD2 C28 C29  SING N N 34 
HD2 C29 O30  SING N N 35 
HD2 O30 C31  SING N N 36 
HD2 C1  H1   SING N N 37 
HD2 C8  H8   SING N N 38 
HD2 N7  H7   SING N N 39 
HD2 C27 H27  SING N N 40 
HD2 C9  H91C SING N N 41 
HD2 C9  H92C SING N N 42 
HD2 C12 H121 SING N N 43 
HD2 C12 H122 SING N N 44 
HD2 C10 H101 SING N N 45 
HD2 C10 H102 SING N N 46 
HD2 C11 H111 SING N N 47 
HD2 C11 H112 SING N N 48 
HD2 N15 H15  SING N N 49 
HD2 C16 H16  SING N N 50 
HD2 C17 H17  SING N N 51 
HD2 C21 H21  SING N N 52 
HD2 C18 H181 SING N N 53 
HD2 C18 H182 SING N N 54 
HD2 C25 H251 SING N N 55 
HD2 C25 H252 SING N N 56 
HD2 C19 H19  SING N N 57 
HD2 C20 H201 SING N N 58 
HD2 C20 H202 SING N N 59 
HD2 C24 H241 SING N N 60 
HD2 C24 H242 SING N N 61 
HD2 C22 H221 SING N N 62 
HD2 C22 H222 SING N N 63 
HD2 O26 H26  SING N N 64 
HD2 C28 H281 SING N N 65 
HD2 C28 H282 SING N N 66 
HD2 C31 H311 SING N N 67 
HD2 C31 H312 SING N N 68 
HD2 C29 H291 SING N N 69 
HD2 C29 H292 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HD2 SMILES           ACDLabs              12.01 "O=C(NC3C2CC1CC3CC(O)(C1)C2)c4cnc(nc4C5CCCC5)NC6CCOC6"                                                                                                                                                       
HD2 InChI            InChI                1.03  "InChI=1S/C24H34N4O3/c29-22(27-20-16-7-14-8-17(20)11-24(30,9-14)10-16)19-12-25-23(26-18-5-6-31-13-18)28-21(19)15-3-1-2-4-15/h12,14-18,20,30H,1-11,13H2,(H,27,29)(H,25,26,28)/t14-,16-,17+,18-,20-,24-/m0/s1" 
HD2 InChIKey         InChI                1.03  VMTZDIHMLVWUQZ-GXLRSYGRSA-N                                                                                                                                                                                  
HD2 SMILES_CANONICAL CACTVS               3.385 "OC12CC3C[C@H](C1)C(NC(=O)c4cnc(N[C@H]5CCOC5)nc4C6CCCC6)[C@@H](C3)C2"                                                                                                                                        
HD2 SMILES           CACTVS               3.385 "OC12CC3C[CH](C1)C(NC(=O)c4cnc(N[CH]5CCOC5)nc4C6CCCC6)[CH](C3)C2"                                                                                                                                            
HD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(c(nc(n1)N[C@H]2CCOC2)C3CCCC3)C(=O)NC4[C@@H]5CC6C[C@H]4CC(C5)(C6)O"                                                                                                                                      
HD2 SMILES           "OpenEye OEToolkits" 1.9.2 "c1c(c(nc(n1)NC2CCOC2)C3CCCC3)C(=O)NC4C5CC6CC4CC(C6)(C5)O"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HD2 "SYSTEMATIC NAME" ACDLabs              12.01 "4-cyclopentyl-N-[(1R,2s,3S,5s,7s)-5-hydroxytricyclo[3.3.1.1~3,7~]dec-2-yl]-2-[(3S)-tetrahydrofuran-3-ylamino]pyrimidine-5-carboxamide" 
HD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-cyclopentyl-N-[(1S,3R)-5-oxidanyl-2-adamantyl]-2-[[(3S)-oxolan-3-yl]amino]pyrimidine-5-carboxamide"                                  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HD2 "Create component"  2012-09-20 EBI  
HD2 "Initial release"   2012-11-23 RCSB 
HD2 "Modify descriptor" 2014-09-05 RCSB 
# 
