data_IC2
# 
_chem_comp.id                                    IC2 
_chem_comp.name                                  "5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H17 F3 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-28 
_chem_comp.pdbx_modified_date                    2023-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        434.435 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IC2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PYK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IC2 C1  C1  C 0 1 Y N N -41.677 1.588  -17.224 4.404  1.110  0.135  C1  IC2 1  
IC2 C2  C2  C 0 1 Y N N -42.270 1.999  -16.028 5.310  1.420  -0.897 C2  IC2 2  
IC2 C7  C3  C 0 1 Y N N -40.953 0.455  -16.931 4.476  -0.341 0.321  C7  IC2 3  
IC2 C8  C4  C 0 1 N N N -40.214 -2.858 -17.806 1.900  -2.523 -0.037 C8  IC2 4  
IC2 C9  C5  C 0 1 N N N -39.289 -3.790 -17.069 0.428  -2.245 -0.265 C9  IC2 5  
IC2 C11 C6  C 0 1 N N N -38.590 -1.746 -16.679 1.260  -0.614 0.992  C11 IC2 6  
IC2 C13 C7  C 0 1 Y N N -37.410 -3.470 -15.624 -1.093 -0.481 0.432  C13 IC2 7  
IC2 C14 C8  C 0 1 N N N -40.203 -3.113 -19.342 2.094  -3.846 0.705  C14 IC2 8  
IC2 C15 C9  C 0 1 N N N -41.606 -2.788 -17.192 2.657  -2.538 -1.367 C15 IC2 9  
IC2 O17 O1  O 0 1 N N N -37.902 -0.813 -16.257 1.275  0.412  1.644  O17 IC2 10 
IC2 C19 C10 C 0 1 Y N N -36.588 -4.488 -16.010 -1.296 0.630  1.240  C19 IC2 11 
IC2 C20 C11 C 0 1 Y N N -35.574 -4.895 -15.174 -2.537 1.232  1.287  C20 IC2 12 
IC2 C21 C12 C 0 1 Y N N -35.375 -4.341 -13.921 -3.584 0.726  0.525  C21 IC2 13 
IC2 C22 C13 C 0 1 Y N N -36.204 -3.321 -13.511 -3.380 -0.386 -0.283 C22 IC2 14 
IC2 C6  C14 C 0 1 Y N N -41.861 2.303  -18.406 3.675  2.136  0.741  C6  IC2 15 
IC2 C5  C15 C 0 1 Y N N -42.650 3.439  -18.347 3.873  3.427  0.290  C5  IC2 16 
IC2 C4  C16 C 0 1 Y N N -43.227 3.794  -17.125 4.777  3.659  -0.735 C4  IC2 17 
IC2 N3  N1  N 0 1 Y N N -43.035 3.094  -16.010 5.460  2.678  -1.287 N3  IC2 18 
IC2 N30 N2  N 0 1 Y N N -41.909 1.150  -15.077 5.882  0.236  -1.298 N30 IC2 19 
IC2 C29 C17 C 0 1 Y N N -41.120 0.213  -15.619 5.374  -0.802 -0.563 C29 IC2 20 
IC2 C18 C18 C 0 1 N N N -40.144 -0.309 -17.951 3.692  -1.159 1.314  C18 IC2 21 
IC2 N12 N3  N 0 1 N N N -39.647 -1.584 -17.462 2.341  -1.391 0.797  N12 IC2 22 
IC2 O16 O2  O 0 1 N N N -39.321 -5.028 -17.085 -0.354 -2.918 -0.903 O16 IC2 23 
IC2 N10 N4  N 0 1 N N N -38.370 -3.035 -16.440 0.168  -1.096 0.389  N10 IC2 24 
IC2 C23 C19 C 0 1 Y N N -37.246 -2.890 -14.339 -2.138 -0.987 -0.329 C23 IC2 25 
IC2 S24 S1  S 0 1 N N N -34.038 -4.987 -12.945 -5.169 1.493  0.586  S24 IC2 26 
IC2 C25 C20 C 0 1 N N N -32.678 -3.804 -13.426 -6.155 0.483  -0.554 C25 IC2 27 
IC2 F27 F1  F 0 1 N N N -31.560 -4.087 -12.749 -7.460 0.983  -0.609 F27 IC2 28 
IC2 F28 F2  F 0 1 N N N -32.395 -3.822 -14.740 -5.584 0.528  -1.830 F28 IC2 29 
IC2 F26 F3  F 0 1 N N N -33.064 -2.563 -13.197 -6.181 -0.840 -0.101 F26 IC2 30 
IC2 H1  H1  H 0 1 N N N -40.646 -4.097 -19.554 1.508  -3.836 1.624  H1  IC2 31 
IC2 H2  H2  H 0 1 N N N -40.789 -2.331 -19.848 1.763  -4.670 0.072  H2  IC2 32 
IC2 H3  H3  H 0 1 N N N -39.167 -3.090 -19.710 3.148  -3.976 0.948  H3  IC2 33 
IC2 H4  H4  H 0 1 N N N -41.522 -2.606 -16.110 3.726  -2.635 -1.176 H4  IC2 34 
IC2 H5  H5  H 0 1 N N N -42.172 -1.968 -17.658 2.318  -3.381 -1.969 H5  IC2 35 
IC2 H6  H6  H 0 1 N N N -42.131 -3.739 -17.364 2.467  -1.608 -1.904 H6  IC2 36 
IC2 H7  H7  H 0 1 N N N -36.732 -4.971 -16.965 -0.483 1.023  1.831  H7  IC2 37 
IC2 H8  H8  H 0 1 N N N -34.908 -5.677 -15.508 -2.695 2.095  1.916  H8  IC2 38 
IC2 H9  H9  H 0 1 N N N -36.050 -2.853 -12.550 -4.193 -0.779 -0.875 H9  IC2 39 
IC2 H10 H10 H 0 1 N N N -41.406 1.983  -19.332 2.977  1.926  1.538  H10 IC2 40 
IC2 H11 H11 H 0 1 N N N -42.816 4.040  -19.229 3.329  4.248  0.732  H11 IC2 41 
IC2 H12 H12 H 0 1 N N N -43.854 4.672  -17.084 4.930  4.669  -1.085 H12 IC2 42 
IC2 H13 H13 H 0 1 N N N -42.180 1.200  -14.116 6.547  0.149  -1.998 H13 IC2 43 
IC2 H14 H14 H 0 1 N N N -40.682 -0.615 -15.081 5.656  -1.839 -0.678 H14 IC2 44 
IC2 H15 H15 H 0 1 N N N -39.284 0.309  -18.247 4.190  -2.115 1.471  H15 IC2 45 
IC2 H16 H16 H 0 1 N N N -40.779 -0.497 -18.829 3.631  -0.621 2.260  H16 IC2 46 
IC2 H17 H17 H 0 1 N N N -37.923 -2.119 -14.002 -1.980 -1.850 -0.958 H17 IC2 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IC2 C14 C8  SING N N 1  
IC2 C6  C5  DOUB Y N 2  
IC2 C6  C1  SING Y N 3  
IC2 C5  C4  SING Y N 4  
IC2 C18 N12 SING N N 5  
IC2 C18 C7  SING N N 6  
IC2 C8  N12 SING N N 7  
IC2 C8  C15 SING N N 8  
IC2 C8  C9  SING N N 9  
IC2 N12 C11 SING N N 10 
IC2 C1  C7  SING Y N 11 
IC2 C1  C2  DOUB Y N 12 
IC2 C4  N3  DOUB Y N 13 
IC2 O16 C9  DOUB N N 14 
IC2 C9  N10 SING N N 15 
IC2 C7  C29 DOUB Y N 16 
IC2 C11 N10 SING N N 17 
IC2 C11 O17 DOUB N N 18 
IC2 N10 C13 SING N N 19 
IC2 C2  N3  SING Y N 20 
IC2 C2  N30 SING Y N 21 
IC2 C19 C13 DOUB Y N 22 
IC2 C19 C20 SING Y N 23 
IC2 C13 C23 SING Y N 24 
IC2 C29 N30 SING Y N 25 
IC2 C20 C21 DOUB Y N 26 
IC2 F28 C25 SING N N 27 
IC2 C23 C22 DOUB Y N 28 
IC2 C21 C22 SING Y N 29 
IC2 C21 S24 SING N N 30 
IC2 C25 F26 SING N N 31 
IC2 C25 S24 SING N N 32 
IC2 C25 F27 SING N N 33 
IC2 C14 H1  SING N N 34 
IC2 C14 H2  SING N N 35 
IC2 C14 H3  SING N N 36 
IC2 C15 H4  SING N N 37 
IC2 C15 H5  SING N N 38 
IC2 C15 H6  SING N N 39 
IC2 C19 H7  SING N N 40 
IC2 C20 H8  SING N N 41 
IC2 C22 H9  SING N N 42 
IC2 C6  H10 SING N N 43 
IC2 C5  H11 SING N N 44 
IC2 C4  H12 SING N N 45 
IC2 N30 H13 SING N N 46 
IC2 C29 H14 SING N N 47 
IC2 C18 H15 SING N N 48 
IC2 C18 H16 SING N N 49 
IC2 C23 H17 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IC2 InChI            InChI                1.06  "InChI=1S/C20H17F3N4O2S/c1-19(2)17(28)27(13-5-7-14(8-6-13)30-20(21,22)23)18(29)26(19)11-12-10-25-16-15(12)4-3-9-24-16/h3-10H,11H2,1-2H3,(H,24,25)" 
IC2 InChIKey         InChI                1.06  RLTCQGGOKJNJBI-UHFFFAOYSA-N                                                                                                                        
IC2 SMILES_CANONICAL CACTVS               3.385 "CC1(C)N(Cc2c[nH]c3ncccc23)C(=O)N(C1=O)c4ccc(SC(F)(F)F)cc4"                                                                                        
IC2 SMILES           CACTVS               3.385 "CC1(C)N(Cc2c[nH]c3ncccc23)C(=O)N(C1=O)c4ccc(SC(F)(F)F)cc4"                                                                                        
IC2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N(C(=O)N1Cc2c[nH]c3c2cccn3)c4ccc(cc4)SC(F)(F)F)C"                                                                                        
IC2 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N(C(=O)N1Cc2c[nH]c3c2cccn3)c4ccc(cc4)SC(F)(F)F)C"                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           IC2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5,5-dimethyl-1-(1~{H}-pyrrolo[2,3-b]pyridin-3-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IC2 "Create component" 2023-07-28 PDBE 
IC2 "Initial release"  2023-09-20 RCSB 
# 
