data_ID2
# 
_chem_comp.id                                    ID2 
_chem_comp.name                                  5-IODODEOXYURIDINE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H11 I N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.099 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ID2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KI7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ID2 C2     C2   C 0 1 N N N 22.285 95.364 44.707 1.375  -0.045 0.922  C2     ID2 1  
ID2 C4     C4   C 0 1 N N N 22.769 92.982 44.255 1.650  0.148  -1.390 C4     ID2 2  
ID2 C5     C5   C 0 1 N N N 21.303 92.809 44.147 0.252  -0.003 -1.557 C5     ID2 3  
ID2 C6     C6   C 0 1 N N N 20.425 93.897 44.322 -0.525 -0.174 -0.466 C6     ID2 4  
ID2 O2     O2   O 0 1 N N N 22.769 96.456 44.927 1.863  -0.068 2.036  O2     ID2 5  
ID2 "O5'"  O5*  O 0 1 N N N 17.370 94.389 44.310 -0.799 2.429  5.185  "O5'"  ID2 6  
ID2 "C5'"  C5*  C 0 1 N N N 16.969 95.103 45.402 -0.107 1.179  5.195  "C5'"  ID2 7  
ID2 "C4'"  C4*  C 0 1 N N R 17.857 96.292 45.558 -0.763 0.225  4.194  "C4'"  ID2 8  
ID2 "O4'"  O4*  O 0 1 N N N 19.199 95.866 45.810 -0.641 0.736  2.850  "O4'"  ID2 9  
ID2 "C1'"  C1*  C 0 1 N N R 20.065 96.308 44.831 -0.796 -0.381 1.960  "C1'"  ID2 10 
ID2 N1     N1   N 0 1 N N N 20.921 95.175 44.613 0.047  -0.196 0.776  N1     ID2 11 
ID2 N3     N3   N 0 1 N N N 23.133 94.287 44.544 2.175  0.120  -0.148 N3     ID2 12 
ID2 O4     O4   O 0 1 N N N 23.658 92.124 44.102 2.372  0.304  -2.358 O4     ID2 13 
ID2 I      I    I 0 1 N N N 20.569 90.902 43.634 -0.597 0.035  -3.472 I      ID2 14 
ID2 "C2'"  C2*  C 0 1 N N N 19.099 96.564 43.734 -0.357 -1.642 2.728  "C2'"  ID2 15 
ID2 "C3'"  C3*  C 0 1 N N S 17.887 97.126 44.400 0.000  -1.122 4.143  "C3'"  ID2 16 
ID2 "O3'"  O3*  O 0 1 N N N 18.254 98.372 44.787 -0.468 -2.020 5.151  "O3'"  ID2 17 
ID2 H6     H6   H 0 1 N N N 19.336 93.746 44.230 -1.593 -0.292 -0.575 H6     ID2 18 
ID2 "HO5'" *HO5 H 0 0 N N N 16.804 93.632 44.210 -0.356 2.999  5.828  "HO5'" ID2 19 
ID2 "H5'1" 1H5* H 0 0 N N N 15.890 95.381 45.354 0.933  1.338  4.916  "H5'1" ID2 20 
ID2 "H5'2" 2H5* H 0 0 N N N 16.928 94.479 46.325 -0.154 0.745  6.194  "H5'2" ID2 21 
ID2 "H4'"  H4*  H 0 1 N N N 17.438 96.878 46.408 -1.810 0.063  4.450  "H4'"  ID2 22 
ID2 "H1'"  H1*  H 0 1 N N N 20.714 97.198 45.003 -1.840 -0.474 1.660  "H1'"  ID2 23 
ID2 HN3    HN3  H 0 1 N N N 24.130 94.474 44.647 3.131  0.224  -0.025 HN3    ID2 24 
ID2 "H2'1" 1H2* H 0 0 N N N 19.504 97.208 42.919 -1.176 -2.359 2.784  "H2'1" ID2 25 
ID2 "H2'2" 2H2* H 0 0 N N N 18.890 95.670 43.100 0.514  -2.094 2.254  "H2'2" ID2 26 
ID2 "H3'"  H3*  H 0 1 N N N 16.936 97.163 43.817 1.074  -0.961 4.238  "H3'"  ID2 27 
ID2 "HO3'" *HO3 H 0 0 N N N 18.274 98.927 44.016 -0.020 -2.864 5.004  "HO3'" ID2 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ID2 C2    O2     DOUB N N 1  
ID2 C2    N1     SING N N 2  
ID2 C2    N3     SING N N 3  
ID2 C4    C5     SING N N 4  
ID2 C4    N3     SING N N 5  
ID2 C4    O4     DOUB N N 6  
ID2 C5    C6     DOUB N N 7  
ID2 C5    I      SING N N 8  
ID2 C6    N1     SING N N 9  
ID2 C6    H6     SING N N 10 
ID2 "O5'" "C5'"  SING N N 11 
ID2 "O5'" "HO5'" SING N N 12 
ID2 "C5'" "C4'"  SING N N 13 
ID2 "C5'" "H5'1" SING N N 14 
ID2 "C5'" "H5'2" SING N N 15 
ID2 "C4'" "O4'"  SING N N 16 
ID2 "C4'" "C3'"  SING N N 17 
ID2 "C4'" "H4'"  SING N N 18 
ID2 "O4'" "C1'"  SING N N 19 
ID2 "C1'" N1     SING N N 20 
ID2 "C1'" "C2'"  SING N N 21 
ID2 "C1'" "H1'"  SING N N 22 
ID2 N3    HN3    SING N N 23 
ID2 "C2'" "C3'"  SING N N 24 
ID2 "C2'" "H2'1" SING N N 25 
ID2 "C2'" "H2'2" SING N N 26 
ID2 "C3'" "O3'"  SING N N 27 
ID2 "C3'" "H3'"  SING N N 28 
ID2 "O3'" "HO3'" SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ID2 SMILES           ACDLabs              10.04 "IC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)CO"                                                                                 
ID2 SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(I)C(=O)NC2=O"                                                                         
ID2 SMILES           CACTVS               3.341 "OC[CH]1O[CH](C[CH]1O)N2C=C(I)C(=O)NC2=O"                                                                             
ID2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)I)CO)O"                                                                       
ID2 SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=O)NC2=O)I)CO)O"                                                                                    
ID2 InChI            InChI                1.03  "InChI=1S/C9H11IN2O5/c10-4-2-12(9(16)11-8(4)15)7-1-5(14)6(3-13)17-7/h2,5-7,13-14H,1,3H2,(H,11,15,16)/t5-,6+,7+/m0/s1" 
ID2 InChIKey         InChI                1.03  XQFRJNBWHJMXHO-RRKCRQDMSA-N                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ID2 "SYSTEMATIC NAME" ACDLabs              10.04 "2'-deoxy-5-iodouridine"                                                            
ID2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-iodo-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ID2 "Create component"  1999-07-08 RCSB 
ID2 "Modify descriptor" 2011-06-04 RCSB 
# 
