data_JD2
#

_chem_comp.id                                   JD2
_chem_comp.name                                 "5-azanyl-3-[1-(pyridin-2-ylmethyl)indol-6-yl]-1~{H}-pyrazole-4-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H14 N6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-19
_chem_comp.pdbx_modified_date                   2020-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       314.344
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JD2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QQY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JD2  C10  C1   C  0  1  Y  N  N  -23.293  21.115  -11.362   0.907  -1.286  -0.275  C10  JD2   1  
JD2  C13  C2   C  0  1  Y  N  N  -22.188  23.717   -9.643   3.525   0.627  -0.605  C13  JD2   2  
JD2  C15  C3   C  0  1  Y  N  N  -21.889  23.078   -7.437   3.251   2.170   1.083  C15  JD2   3  
JD2  C17  C4   C  0  1  Y  N  N  -20.456  24.786   -8.366   5.432   1.836   0.172  C17  JD2   4  
JD2  C20  C5   C  0  1  Y  N  N  -25.497  20.982  -10.884   1.816  -3.280   0.402  C20  JD2   5  
JD2  C21  C6   C  0  1  Y  N  N  -21.998  20.689  -11.752  -0.058  -0.296  -0.403  C21  JD2   6  
JD2  C22  C7   C  0  1  Y  N  N  -19.881  17.596  -12.538  -3.786   0.375  -0.079  C22  JD2   7  
JD2  N01  N1   N  0  1  N  N  N  -17.555  16.738  -12.925  -5.699   1.924  -0.315  N01  JD2   8  
JD2  C02  C8   C  0  1  Y  N  N  -18.516  17.766  -12.717  -4.353   1.641  -0.180  C02  JD2   9  
JD2  N03  N2   N  0  1  Y  N  N  -18.244  19.088  -12.640  -3.352   2.543  -0.122  N03  JD2  10  
JD2  N04  N3   N  0  1  Y  N  N  -19.408  19.758  -12.427  -2.130   1.879   0.017  N04  JD2  11  
JD2  C05  C9   C  0  1  Y  N  N  -20.412  18.884  -12.400  -2.339   0.583   0.047  C05  JD2  12  
JD2  C06  C10  C  0  1  Y  N  N  -21.829  19.332  -12.080  -1.306  -0.471   0.183  C06  JD2  13  
JD2  C07  C11  C  0  1  Y  N  N  -22.867  18.389  -11.995  -1.594  -1.638   0.900  C07  JD2  14  
JD2  C08  C12  C  0  1  Y  N  N  -24.143  18.828  -11.613  -0.652  -2.616   1.033  C08  JD2  15  
JD2  C09  C13  C  0  1  Y  N  N  -24.342  20.209  -11.295   0.607  -2.455   0.449  C09  JD2  16  
JD2  N11  N4   N  0  1  Y  N  N  -23.757  22.374  -11.017   2.205  -1.406  -0.722  N11  JD2  17  
JD2  C12  C14  C  0  1  N  N  N  -22.951  23.583  -10.964   2.916  -0.404  -1.520  C12  JD2  18  
JD2  N14  N5   N  0  1  Y  N  N  -22.523  22.978   -8.604   2.760   1.264   0.259  N14  JD2  19  
JD2  C16  C15  C  0  1  Y  N  N  -20.843  23.976   -7.287   4.596   2.485   1.067  C16  JD2  20  
JD2  C18  C16  C  0  1  Y  N  N  -21.159  24.649   -9.580   4.880   0.889  -0.678  C18  JD2  21  
JD2  C19  C17  C  0  1  Y  N  N  -25.077  22.306  -10.723   2.730  -2.600  -0.309  C19  JD2  22  
JD2  C23  C18  C  0  1  N  N  N  -20.538  16.235  -12.583  -4.476  -0.880  -0.090  C23  JD2  23  
JD2  N24  N6   N  0  1  N  N  N  -20.971  15.178  -12.629  -5.023  -1.875  -0.099  N24  JD2  24  
JD2  H1   H1   H  0  1  N  N  N  -22.190  22.458   -6.605   2.593   2.671   1.778  H1   JD2  25  
JD2  H2   H2   H  0  1  N  N  N  -19.645  25.492   -8.269   6.488   2.061   0.137  H2   JD2  26  
JD2  H3   H3   H  0  1  N  N  N  -26.497  20.605  -10.730   1.948  -4.252   0.854  H3   JD2  27  
JD2  H4   H4   H  0  1  N  N  N  -21.171  21.382  -11.796   0.160   0.606  -0.956  H4   JD2  28  
JD2  H5   H5   H  0  1  N  N  N  -18.014  15.850  -12.942  -5.997   2.845  -0.378  H5   JD2  29  
JD2  H6   H6   H  0  1  N  N  N  -17.089  16.889  -13.797  -6.346   1.202  -0.347  H6   JD2  30  
JD2  H7   H7   H  0  1  N  N  N  -17.338  19.504  -12.725  -3.463   3.505  -0.169  H7   JD2  31  
JD2  H8   H8   H  0  1  N  N  N  -22.686  17.348  -12.219  -2.566  -1.764   1.352  H8   JD2  32  
JD2  H9   H9   H  0  1  N  N  N  -24.967  18.131  -11.559  -0.881  -3.514   1.588  H9   JD2  33  
JD2  H10  H10  H  0  1  N  N  N  -22.226  23.561  -11.791   2.217   0.082  -2.201  H10  JD2  34  
JD2  H11  H11  H  0  1  N  N  N  -23.612  24.454  -11.080   3.704  -0.891  -2.095  H11  JD2  35  
JD2  H12  H12  H  0  1  N  N  N  -20.327  24.052   -6.341   4.992   3.227   1.745  H12  JD2  36  
JD2  H13  H13  H  0  1  N  N  N  -20.905  25.253  -10.439   5.501   0.364  -1.388  H13  JD2  37  
JD2  H14  H14  H  0  1  N  N  N  -25.700  23.134  -10.416   3.731  -2.944  -0.523  H14  JD2  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JD2  N01  C02  SING  N  N   1  
JD2  C02  N03  SING  Y  N   2  
JD2  C02  C22  DOUB  Y  N   3  
JD2  N03  N04  SING  Y  N   4  
JD2  N24  C23  TRIP  N  N   5  
JD2  C23  C22  SING  N  N   6  
JD2  C22  C05  SING  Y  N   7  
JD2  N04  C05  DOUB  Y  N   8  
JD2  C05  C06  SING  N  N   9  
JD2  C06  C07  DOUB  Y  N  10  
JD2  C06  C21  SING  Y  N  11  
JD2  C07  C08  SING  Y  N  12  
JD2  C21  C10  DOUB  Y  N  13  
JD2  C08  C09  DOUB  Y  N  14  
JD2  C10  C09  SING  Y  N  15  
JD2  C10  N11  SING  Y  N  16  
JD2  C09  C20  SING  Y  N  17  
JD2  N11  C12  SING  N  N  18  
JD2  N11  C19  SING  Y  N  19  
JD2  C12  C13  SING  N  N  20  
JD2  C20  C19  DOUB  Y  N  21  
JD2  C13  C18  DOUB  Y  N  22  
JD2  C13  N14  SING  Y  N  23  
JD2  C18  C17  SING  Y  N  24  
JD2  N14  C15  DOUB  Y  N  25  
JD2  C17  C16  DOUB  Y  N  26  
JD2  C15  C16  SING  Y  N  27  
JD2  C15  H1   SING  N  N  28  
JD2  C17  H2   SING  N  N  29  
JD2  C20  H3   SING  N  N  30  
JD2  C21  H4   SING  N  N  31  
JD2  N01  H5   SING  N  N  32  
JD2  N01  H6   SING  N  N  33  
JD2  N03  H7   SING  N  N  34  
JD2  C07  H8   SING  N  N  35  
JD2  C08  H9   SING  N  N  36  
JD2  C12  H10  SING  N  N  37  
JD2  C12  H11  SING  N  N  38  
JD2  C16  H12  SING  N  N  39  
JD2  C18  H13  SING  N  N  40  
JD2  C19  H14  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JD2  InChI             InChI                 1.03   "InChI=1S/C18H14N6/c19-10-15-17(22-23-18(15)20)13-5-4-12-6-8-24(16(12)9-13)11-14-3-1-2-7-21-14/h1-9H,11H2,(H3,20,22,23)"  
JD2  InChIKey          InChI                 1.03   OGAVRMBWGWENPE-UHFFFAOYSA-N  
JD2  SMILES_CANONICAL  CACTVS                3.385  "Nc1[nH]nc(c2ccc3ccn(Cc4ccccn4)c3c2)c1C#N"  
JD2  SMILES            CACTVS                3.385  "Nc1[nH]nc(c2ccc3ccn(Cc4ccccn4)c3c2)c1C#N"  
JD2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)Cn2ccc3c2cc(cc3)c4c(c([nH]n4)N)C#N"  
JD2  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)Cn2ccc3c2cc(cc3)c4c(c([nH]n4)N)C#N"  
#
_pdbx_chem_comp_identifier.comp_id          JD2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-azanyl-3-[1-(pyridin-2-ylmethyl)indol-6-yl]-1~{H}-pyrazole-4-carbonitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JD2  "Create component"  2019-02-19  RCSB  
JD2  "Initial release"   2020-03-18  RCSB  
##
