data_KT2
#

_chem_comp.id                                   KT2
_chem_comp.name                                 "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H25 N9 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-20
_chem_comp.pdbx_modified_date                   2019-11-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       673.423
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KT2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S26
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KT2  C1    C1   C  0  1  Y  N  N   3.692  28.162  -13.857  -6.222   0.065  -0.167  C1    KT2   1  
KT2  C2    C2   C  0  1  Y  N  N   2.345  28.159  -13.646  -7.192  -0.613   0.580  C2    KT2   2  
KT2  C3    C3   C  0  1  N  N  N   1.623  27.027  -13.953  -8.436   0.021   0.809  C3    KT2   3  
KT2  C4    C4   C  0  1  Y  N  N   3.182  30.063  -13.073  -5.457  -1.905   0.456  C4    KT2   4  
KT2  C5    C5   C  0  1  N  N  R   6.907  31.753  -13.848  -2.000  -0.794   0.573  C5    KT2   5  
KT2  C6    C6   C  0  1  N  N  R   5.876  30.903  -14.548  -2.947   0.305   0.030  C6    KT2   6  
KT2  C7    C7   C  0  1  N  N  R   5.631  29.702  -13.629  -3.874  -0.494  -0.911  C7    KT2   7  
KT2  C12   C8   C  0  1  Y  N  N  -0.353  33.185  -16.381   7.608   1.213   0.652  C12   KT2   8  
KT2  C11   C9   C  0  1  Y  N  N   0.325  34.416  -16.064   6.841   0.451  -0.248  C11   KT2   9  
KT2  O11   O1   O  0  1  N  N  N   4.717  30.203  -17.483  -1.255   2.276   1.385  O11   KT2  10  
KT2  N8    N1   N  0  1  N  N  N   4.247  24.955  -15.124  -7.875   3.119  -0.934  N8    KT2  11  
KT2  C9    C10  C  0  1  N  N  N   6.005  32.433  -11.735  -1.580  -3.170  -0.146  C9    KT2  12  
KT2  O9    O2   O  0  1  N  N  N   6.389  30.630  -15.825  -2.205   1.260  -0.724  O9    KT2  13  
KT2  N     N2   N  0  1  N  N  N   2.247  25.970  -14.440  -8.632   1.255   0.296  N     KT2  14  
KT2  C     C11  C  0  1  N  N  N   3.558  25.998  -14.630  -7.648   1.865  -0.424  C     KT2  15  
KT2  O     O3   O  0  1  N  N  N   0.407  26.987  -13.775  -9.310  -0.534   1.454  O     KT2  16  
KT2  C10   C12  C  0  1  Y  N  N  -1.610  35.238  -15.159   8.737  -0.724  -0.813  C10   KT2  17  
KT2  C13   C13  C  0  1  Y  N  N  -1.673  33.092  -16.036   8.979   0.938   0.769  C13   KT2  18  
KT2  C14   C14  C  0  1  Y  N  N   1.759  33.054  -17.045   5.474   1.928   0.745  C14   KT2  19  
KT2  C15   C15  C  0  1  N  N  S   4.104  34.530  -14.882   2.344  -0.506  -0.050  C15   KT2  20  
KT2  C16   C16  C  0  1  N  N  R   2.853  35.374  -14.911   3.836  -0.837  -0.241  C16   KT2  21  
KT2  C17   C17  C  0  1  N  N  R   2.545  35.336  -16.358   4.429   0.390  -0.950  C17   KT2  22  
KT2  C18   C18  C  0  1  N  N  R   4.835  34.874  -16.168   2.131   0.825  -0.788  C18   KT2  23  
KT2  C19   C19  C  0  1  N  N  N   5.758  33.802  -16.766   1.322   1.793   0.079  C19   KT2  24  
KT2  C21   C20  C  0  1  Y  N  N   0.591  32.355  -16.997   6.685   2.159   1.276  C21   KT2  25  
KT2  C8    C21  C  0  1  N  N  R   6.784  31.348  -12.419  -1.926  -1.765  -0.627  C8    KT2  26  
KT2  N1    N3   N  0  1  N  N  N   4.270  27.075  -14.354  -6.486   1.289  -0.640  N1    KT2  27  
KT2  N2    N4   N  0  1  Y  N  N   4.198  29.322  -13.509  -5.140  -0.769  -0.231  N2    KT2  28  
KT2  N3    N5   N  0  1  Y  N  N   2.046  29.353  -13.150  -6.664  -1.811   0.931  N3    KT2  29  
KT2  N4    N6   N  0  1  Y  N  N  -2.256  34.116  -15.434   9.494  -0.033   0.020  N4    KT2  30  
KT2  N5    N7   N  0  1  Y  N  N  -0.340  35.409  -15.463   7.448  -0.502  -0.954  N5    KT2  31  
KT2  N6    N8   N  0  1  Y  N  N   1.564  34.259  -16.501   5.555   0.912  -0.172  N6    KT2  32  
KT2  N9    N9   N  0  1  N  N  N  -2.381  31.996  -16.284   9.776   1.660   1.639  N9    KT2  33  
KT2  O1    O4   O  0  1  N  N  N   6.097  30.104  -12.366  -3.223  -1.729  -1.235  O1    KT2  34  
KT2  O10   O5   O  0  1  N  N  N   8.270  31.546  -14.248  -0.717  -0.266   0.879  O10   KT2  35  
KT2  O12   O6   O  0  1  N  N  N   2.748  33.937  -12.427   0.727  -2.478   1.582  O12   KT2  36  
KT2  O2    O7   O  0  1  N  N  N   4.823  32.636  -12.469  -0.236  -3.483  -0.524  O2    KT2  37  
KT2  O3    O8   O  0  1  N  N  N   4.661  34.799  -11.127   2.251  -3.927   0.192  O3    KT2  38  
KT2  O4    O9   O  0  1  N  N  N   6.894  31.129  -18.231  -1.888   3.854  -0.476  O4    KT2  39  
KT2  O5    O10  O  0  1  N  N  N   3.760  35.122  -17.047   3.416   1.388  -1.061  O5    KT2  40  
KT2  O6    O11  O  0  1  N  N  N   2.998  36.741  -14.497   3.991  -2.000  -1.056  O6    KT2  41  
KT2  O7    O12  O  0  1  N  N  N   4.732  34.818  -13.675   1.527  -1.532  -0.618  O7    KT2  42  
KT2  O8    O13  O  0  1  N  N  N   5.073  32.587  -17.060   0.213   2.290  -0.670  O8    KT2  43  
KT2  P     P1   P  0  1  N  N  N   4.173  34.061  -12.416   1.059  -2.844   0.187  P     KT2  44  
KT2  P1    P2   P  0  1  N  N  N   5.752  31.146  -17.158  -1.282   2.412  -0.087  P1    KT2  45  
KT2  H4    H1   H  0  1  N  N  N   3.260  31.078  -12.713  -4.804  -2.756   0.584  H4    KT2  46  
KT2  H5    H2   H  0  1  N  N  N   6.635  32.814  -13.954  -2.444  -1.285   1.436  H5    KT2  47  
KT2  H6    H3   H  0  1  N  N  N   4.941  31.476  -14.629  -3.509   0.764   0.831  H6    KT2  48  
KT2  H7    H4   H  0  1  N  N  N   6.209  28.844  -14.002  -4.052   0.077  -1.818  H7    KT2  49  
KT2  HN81  H5   H  0  0  N  N  N   5.235  25.028  -15.260  -8.726   3.558  -0.779  HN81  KT2  50  
KT2  HN82  H6   H  0  0  N  N  N   3.772  24.106  -15.356  -7.184   3.566  -1.448  HN82  KT2  51  
KT2  H92   H7   H  0  1  N  N  N   6.596  33.361  -11.711  -1.673  -3.223   0.939  H92   KT2  52  
KT2  H93   H8   H  0  1  N  N  N   5.760  32.128  -10.707  -2.260  -3.891  -0.601  H93   KT2  53  
KT2  H     H9   H  0  1  N  N  N   1.728  25.146  -14.666  -9.476   1.710   0.440  H     KT2  54  
KT2  H10   H10  H  0  1  N  N  N  -2.142  36.040  -14.669   9.195  -1.505  -1.402  H10   KT2  55  
KT2  H14   H11  H  0  1  N  N  N   2.691  32.693  -17.456   4.571   2.464   0.999  H14   KT2  56  
KT2  H15   H12  H  0  1  N  N  N   3.814  33.470  -14.918   2.121  -0.391   1.011  H15   KT2  57  
KT2  H16   H13  H  0  1  N  N  N   2.055  34.876  -14.341   4.319  -0.985   0.726  H16   KT2  58  
KT2  H17   H14  H  0  1  N  N  N   2.094  36.292  -16.662   4.774   0.105  -1.945  H17   KT2  59  
KT2  H18   H15  H  0  1  N  N  N   5.419  35.792  -16.010   1.605   0.645  -1.726  H18   KT2  60  
KT2  H192  H16  H  0  0  N  N  N   6.561  33.588  -16.046   0.973   1.285   0.974  H192  KT2  61  
KT2  H193  H17  H  0  0  N  N  N   6.195  34.193  -17.696   1.962   2.630   0.370  H193  KT2  62  
KT2  H21   H18  H  0  1  N  N  N   0.425  31.353  -17.364   6.929   2.900   2.024  H21   KT2  63  
KT2  H8    H19  H  0  1  N  N  N   7.783  31.265  -11.966  -1.178  -1.409  -1.334  H8    KT2  64  
KT2  HN92  H20  H  0  0  N  N  N  -3.316  32.121  -15.953   9.388   2.366   2.179  HN92  KT2  65  
KT2  HN91  H21  H  0  0  N  N  N  -2.396  31.825  -17.269  10.723   1.460   1.710  HN91  KT2  66  
KT2  HO1   H22  H  0  1  N  N  N   8.837  32.125  -13.752  -0.691   0.258   1.692  HO1   KT2  67  
KT2  H3    H23  H  0  1  N  N  N   3.912  35.028  -10.590   2.037  -4.745   0.660  H3    KT2  68  
KT2  HO4   H24  H  0  1  N  N  N   6.687  30.491  -18.904  -1.382   4.600  -0.127  HO4   KT2  69  
KT2  HO6   H25  H  0  1  N  N  N   3.196  36.772  -13.568   4.912  -2.254  -1.209  HO6   KT2  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KT2  O4   P1    SING  N  N   1  
KT2  O11  P1    DOUB  N  N   2  
KT2  P1   O8    SING  N  N   3  
KT2  P1   O9    SING  N  N   4  
KT2  O8   C19   SING  N  N   5  
KT2  O5   C17   SING  N  N   6  
KT2  O5   C18   SING  N  N   7  
KT2  C14  C21   DOUB  Y  N   8  
KT2  C14  N6    SING  Y  N   9  
KT2  C21  C12   SING  Y  N  10  
KT2  C19  C18   SING  N  N  11  
KT2  N6   C17   SING  N  N  12  
KT2  N6   C11   SING  Y  N  13  
KT2  C12  C11   DOUB  Y  N  14  
KT2  C12  C13   SING  Y  N  15  
KT2  C17  C16   SING  N  N  16  
KT2  N9   C13   SING  N  N  17  
KT2  C18  C15   SING  N  N  18  
KT2  C11  N5    SING  Y  N  19  
KT2  C13  N4    DOUB  Y  N  20  
KT2  O9   C6    SING  N  N  21  
KT2  N5   C10   DOUB  Y  N  22  
KT2  N4   C10   SING  Y  N  23  
KT2  N8   C     SING  N  N  24  
KT2  C16  C15   SING  N  N  25  
KT2  C16  O6    SING  N  N  26  
KT2  C15  O7    SING  N  N  27  
KT2  C    N     SING  N  N  28  
KT2  C    N1    DOUB  N  N  29  
KT2  C6   C5    SING  N  N  30  
KT2  C6   C7    SING  N  N  31  
KT2  N    C3    SING  N  N  32  
KT2  N1   C1    SING  N  N  33  
KT2  O10  C5    SING  N  N  34  
KT2  C3   O     DOUB  N  N  35  
KT2  C3   C2    SING  N  N  36  
KT2  C1   C2    DOUB  Y  N  37  
KT2  C1   N2    SING  Y  N  38  
KT2  C5   C8    SING  N  N  39  
KT2  O7   P     SING  N  N  40  
KT2  C2   N3    SING  Y  N  41  
KT2  C7   N2    SING  N  N  42  
KT2  C7   O1    SING  N  N  43  
KT2  N2   C4    SING  Y  N  44  
KT2  N3   C4    DOUB  Y  N  45  
KT2  O2   P     SING  N  N  46  
KT2  O2   C9    SING  N  N  47  
KT2  O12  P     DOUB  N  N  48  
KT2  C8   O1    SING  N  N  49  
KT2  C8   C9    SING  N  N  50  
KT2  P    O3    SING  N  N  51  
KT2  C4   H4    SING  N  N  52  
KT2  C5   H5    SING  N  N  53  
KT2  C6   H6    SING  N  N  54  
KT2  C7   H7    SING  N  N  55  
KT2  N8   HN81  SING  N  N  56  
KT2  N8   HN82  SING  N  N  57  
KT2  C9   H92   SING  N  N  58  
KT2  C9   H93   SING  N  N  59  
KT2  N    H     SING  N  N  60  
KT2  C10  H10   SING  N  N  61  
KT2  C14  H14   SING  N  N  62  
KT2  C15  H15   SING  N  N  63  
KT2  C16  H16   SING  N  N  64  
KT2  C17  H17   SING  N  N  65  
KT2  C18  H18   SING  N  N  66  
KT2  C19  H192  SING  N  N  67  
KT2  C19  H193  SING  N  N  68  
KT2  C21  H21   SING  N  N  69  
KT2  C8   H8    SING  N  N  70  
KT2  N9   HN92  SING  N  N  71  
KT2  N9   HN91  SING  N  N  72  
KT2  O10  HO1   SING  N  N  73  
KT2  O3   H3    SING  N  N  74  
KT2  O4   HO4   SING  N  N  75  
KT2  O6   HO6   SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KT2  InChI             InChI                 1.03   "InChI=1S/C21H25N9O13P2/c22-15-7-1-2-29(16(7)25-5-24-15)19-12(32)13-9(41-19)4-39-45(36,37)43-14-11(31)8(3-38-44(34,35)42-13)40-20(14)30-6-26-10-17(30)27-21(23)28-18(10)33/h1-2,5-6,8-9,11-14,19-20,31-32H,3-4H2,(H,34,35)(H,36,37)(H2,22,24,25)(H3,23,27,28,33)/t8-,9-,11-,12-,13-,14-,19-,20-/m1/s1"  
KT2  InChIKey          InChI                 1.03   UTYHBKZTJXGVRM-NFASUMMFSA-N  
KT2  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6ccc7c(N)ncnc67"  
KT2  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6ccc7c(N)ncnc67"  
KT2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H]([C@@H](COP(=O)(O4)O)O[C@H]5n6cnc7c6N=C(NC7=O)N)O)O)O"  
KT2  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cn(c2c1c(ncn2)N)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)O)OC5n6cnc7c6N=C(NC7=O)N)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          KT2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KT2  "Create component"  2019-06-20  PDBE  
KT2  "Initial release"   2019-11-27  RCSB  
##
