data_LM2
#

_chem_comp.id                                   LM2
_chem_comp.name                                 "4'-O-METHYL-MALTOSYL-ALPHA (1,4)-(Z, 3S,4S,5R,6R)-3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-PIPERIDIN-2-ONE"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C19 H34 N2 O15"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4'-O-METHYL-MALTOSYL-ALPHA (1,4)-D-GLUCONHYDROXIMO-1,5-LACTAM"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-08-05
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       530.478
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LM2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1U33
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LM2  CA1   CA1   C  0  1  N  N  N  10.336  16.889  44.086  -5.098  -0.487  -1.018  CA1   LM2   1  
LM2  NA1   NA1   N  0  1  N  N  N   9.288  16.853  44.895  -6.132  -0.902  -1.673  NA1   LM2   2  
LM2  OA7   OA7   O  0  1  N  N  N   8.636  15.706  44.999  -6.119  -2.182  -2.279  OA7   LM2   3  
LM2  CA2   CA2   C  0  1  N  N  S  11.109  18.214  43.945  -5.081   0.876  -0.359  CA2   LM2   4  
LM2  OA2   OA2   O  0  1  N  N  N  10.390  19.263  44.375  -4.219   1.752  -1.088  OA2   LM2   5  
LM2  CA3   CA3   C  0  1  N  N  R  11.625  18.338  42.468  -4.559   0.713   1.074  CA3   LM2   6  
LM2  OA3   OA3   O  0  1  N  N  N  12.306  19.468  42.324  -5.482  -0.071   1.832  OA3   LM2   7  
LM2  CA4   CA4   C  0  1  N  N  R  12.468  17.069  42.079  -3.199   0.011   1.041  CA4   LM2   8  
LM2  OA4   OA4   O  0  1  N  N  N  12.515  16.967  40.758  -2.293   0.766   0.234  OA4   LM2   9  
LM2  CA5   CA5   C  0  1  N  N  R  11.866  15.744  42.426  -3.362  -1.392   0.448  CA5   LM2  10  
LM2  NA5   NA5   N  0  1  N  N  N  10.744  15.713  43.383  -3.964  -1.276  -0.886  NA5   LM2  11  
LM2  CA6   CA6   C  0  1  N  N  N  12.978  14.844  43.054  -4.275  -2.226   1.348  CA6   LM2  12  
LM2  OA6   OA6   O  0  1  N  N  N  13.442  15.389  44.224  -4.297  -3.577   0.883  OA6   LM2  13  
LM2  CB1   CB1   C  0  1  N  N  S  13.591  17.686  40.172  -1.550   1.748   0.960  CB1   LM2  14  
LM2  CB2   CB2   C  0  1  N  N  R  13.243  17.925  38.626  -0.806   2.656  -0.024  CB2   LM2  15  
LM2  CB3   CB3   C  0  1  N  N  R  13.291  16.600  37.780   0.192   1.816  -0.826  CB3   LM2  16  
LM2  CB4   CB4   C  0  1  N  N  S  14.735  16.016  37.919   1.143   1.108   0.145  CB4   LM2  17  
LM2  CB5   CB5   C  0  1  N  N  R  14.982  15.698  39.537   0.324   0.261   1.122  CB5   LM2  18  
LM2  CB6   CB6   C  0  1  N  N  N  16.354  15.118  39.818   1.263  -0.402   2.133  CB6   LM2  19  
LM2  OB2   OB2   O  0  1  N  N  N  11.950  18.571  38.559  -1.744   3.263  -0.916  OB2   LM2  20  
LM2  OB3   OB3   O  0  1  N  N  N  12.989  16.923  36.400   0.943   2.666  -1.696  OB3   LM2  21  
LM2  OB4   OB4   O  0  1  N  N  N  14.815  14.820  37.162   2.034   0.265  -0.589  OB4   LM2  22  
LM2  OB5   OB5   O  0  1  N  N  N  14.886  16.970  40.291  -0.606   1.098   1.812  OB5   LM2  23  
LM2  OB6   OB6   O  0  1  N  N  N  17.349  15.947  39.321   0.510  -1.265   2.986  OB6   LM2  24  
LM2  CD1   CD1   C  0  1  N  N  R  16.064  14.759  36.395   3.186   0.940  -1.099  CD1   LM2  25  
LM2  CD2   CD2   C  0  1  N  N  R  15.874  14.787  34.825   3.901   0.038  -2.108  CD2   LM2  26  
LM2  CD3   CD3   C  0  1  N  N  R  15.046  13.497  34.401   4.382  -1.230  -1.396  CD3   LM2  27  
LM2  CD4   CD4   C  0  1  N  N  S  15.867  12.228  34.795   5.288  -0.834  -0.227  CD4   LM2  28  
LM2  CD5   CD5   C  0  1  N  N  R  16.096  12.236  36.416   4.520   0.102   0.710  CD5   LM2  29  
LM2  CD6   CD6   C  0  1  N  N  N  16.937  11.005  36.865   5.437   0.551   1.849  CD6   LM2  30  
LM2  OD2   OD2   O  0  1  N  N  N  15.170  16.002  34.499   2.997  -0.317  -3.156  OD2   LM2  31  
LM2  OD3   OD3   O  0  1  N  N  N  14.868  13.495  33.007   5.115  -2.045  -2.313  OD3   LM2  32  
LM2  OD4   OD4   O  0  1  N  N  N  15.138  11.007  34.426   5.685  -2.005   0.489  OD4   LM2  33  
LM2  OD5   OD5   O  0  1  N  N  N  16.810  13.505  36.782   4.074   1.246  -0.022  OD5   LM2  34  
LM2  OD6   OD6   O  0  1  N  N  N  18.247  11.020  36.286   4.689   1.330   2.785  OD6   LM2  35  
LM2  CD7   CD7   C  0  1  N  N  N  15.847  10.133  33.507   6.893  -2.598   0.009  CD7   LM2  36  
LM2  HA7   HA7   H  0  1  N  N  N   7.884  15.680  45.579  -6.936  -2.405  -2.746  HA7   LM2  37  
LM2  HA2   HA2   H  0  1  N  N  N  12.002  18.213  44.612  -6.090   1.286  -0.338  HA2   LM2  38  
LM2  H7    H7    H  0  1  N  N  N  10.866  20.080  44.288  -4.483   1.885  -2.009  H7    LM2  39  
LM2  HA3   HA3   H  0  1  N  N  N  10.760  18.379  41.765  -4.451   1.695   1.535  HA3   LM2  40  
LM2  H6    H6    H  0  1  N  N  N  12.618  19.543  41.430  -6.368   0.314   1.893  H6    LM2  41  
LM2  HA4   HA4   H  0  1  N  N  N  13.425  17.233  42.627  -2.806  -0.067   2.054  HA4   LM2  42  
LM2  H1    H1    H  0  1  N  N  N  11.445  15.400  41.452  -2.386  -1.871   0.369  H1    LM2  43  
LM2  HA5   HA5   H  0  1  N  N  N   9.928  15.335  42.900  -3.580  -1.735  -1.649  HA5   LM2  44  
LM2  HA61  1HA6  H  0  0  N  N  N  12.627  13.795  43.197  -3.899  -2.200   2.371  HA61  LM2  45  
LM2  HA62  2HA6  H  0  0  N  N  N  13.805  14.647  42.333  -5.285  -1.816   1.321  HA62  LM2  46  
LM2  HA6   HA6   H  0  1  N  N  N  14.118  14.841  44.605  -4.858  -4.165   1.408  HA6   LM2  47  
LM2  HB1   HB1   H  0  1  N  N  N  13.708  18.652  40.715  -2.232   2.348   1.563  HB1   LM2  48  
LM2  HB2   HB2   H  0  1  N  N  N  14.020  18.580  38.168  -0.272   3.430   0.526  HB2   LM2  49  
LM2  HB3   HB3   H  0  1  N  N  N  12.547  15.848  38.133  -0.346   1.073  -1.416  HB3   LM2  50  
LM2  HB4   HB4   H  0  1  N  N  N  15.508  16.727  37.545   1.717   1.851   0.699  HB4   LM2  51  
LM2  HB5   HB5   H  0  1  N  N  N  14.210  14.954  39.845  -0.218  -0.508   0.571  HB5   LM2  52  
LM2  HB61  1HB6  H  0  0  N  N  N  16.497  14.904  40.902   2.017  -0.983   1.602  HB61  LM2  53  
LM2  HB62  2HB6  H  0  0  N  N  N  16.450  14.077  39.428   1.751   0.366   2.732  HB62  LM2  54  
LM2  H5    H5    H  0  1  N  N  N  11.743  18.712  37.642  -2.410   3.807  -0.475  H5    LM2  55  
LM2  H4    H4    H  0  1  N  N  N  13.018  16.122  35.889   0.402   3.152  -2.333  H4    LM2  56  
LM2  HB6   HB6   H  0  1  N  N  N  18.208  15.583  39.497   1.042  -1.720   3.654  HB6   LM2  57  
LM2  HD1   HD1   H  0  1  N  N  N  16.635  15.682  36.650   2.878   1.863  -1.590  HD1   LM2  58  
LM2  HD2   HD2   H  0  1  N  N  N  16.845  14.771  34.278   4.756   0.567  -2.527  HD2   LM2  59  
LM2  HD3   HD3   H  0  1  N  N  N  14.054  13.500  34.911   3.523  -1.786  -1.019  HD3   LM2  60  
LM2  HD4   HD4   H  0  1  N  N  N  16.843  12.243  34.256   6.172  -0.322  -0.608  HD4   LM2  61  
LM2  HD5   HD5   H  0  1  N  N  N  15.109  12.180  36.932   3.659  -0.423   1.123  HD5   LM2  62  
LM2  HD61  1HD6  H  0  0  N  N  N  16.984  10.928  37.976   5.848  -0.325   2.351  HD61  LM2  63  
LM2  HD62  2HD6  H  0  0  N  N  N  16.406  10.048  36.647   6.251   1.153   1.444  HD62  LM2  64  
LM2  H3    H3    H  0  1  N  N  N  15.055  16.018  33.556   2.648   0.439  -3.647  H3    LM2  65  
LM2  H2    H2    H  0  1  N  N  N  14.373  12.724  32.753   4.603  -2.328  -3.084  H2    LM2  66  
LM2  HD6   HD6   H  0  1  N  N  N  18.760  10.268  36.560   5.209   1.649   3.535  HD6   LM2  67  
LM2  HD71  1HD7  H  0  0  N  N  N  15.293   9.206  33.227   7.126  -3.481   0.604  HD71  LM2  68  
LM2  HD72  2HD7  H  0  0  N  N  N  16.148  10.695  32.592   6.766  -2.886  -1.035  HD72  LM2  69  
LM2  HD73  3HD7  H  0  0  N  N  N  16.852   9.875  33.914   7.708  -1.880   0.091  HD73  LM2  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LM2  CA1  NA1   DOUB  N  Z   1  
LM2  CA1  CA2   SING  N  N   2  
LM2  CA1  NA5   SING  N  N   3  
LM2  NA1  OA7   SING  N  N   4  
LM2  OA7  HA7   SING  N  N   5  
LM2  CA2  OA2   SING  N  N   6  
LM2  CA2  CA3   SING  N  N   7  
LM2  CA2  HA2   SING  N  N   8  
LM2  OA2  H7    SING  N  N   9  
LM2  CA3  OA3   SING  N  N  10  
LM2  CA3  CA4   SING  N  N  11  
LM2  CA3  HA3   SING  N  N  12  
LM2  OA3  H6    SING  N  N  13  
LM2  CA4  OA4   SING  N  N  14  
LM2  CA4  CA5   SING  N  N  15  
LM2  CA4  HA4   SING  N  N  16  
LM2  OA4  CB1   SING  N  N  17  
LM2  CA5  NA5   SING  N  N  18  
LM2  CA5  CA6   SING  N  N  19  
LM2  CA5  H1    SING  N  N  20  
LM2  NA5  HA5   SING  N  N  21  
LM2  CA6  OA6   SING  N  N  22  
LM2  CA6  HA61  SING  N  N  23  
LM2  CA6  HA62  SING  N  N  24  
LM2  OA6  HA6   SING  N  N  25  
LM2  CB1  CB2   SING  N  N  26  
LM2  CB1  OB5   SING  N  N  27  
LM2  CB1  HB1   SING  N  N  28  
LM2  CB2  CB3   SING  N  N  29  
LM2  CB2  OB2   SING  N  N  30  
LM2  CB2  HB2   SING  N  N  31  
LM2  CB3  CB4   SING  N  N  32  
LM2  CB3  OB3   SING  N  N  33  
LM2  CB3  HB3   SING  N  N  34  
LM2  CB4  CB5   SING  N  N  35  
LM2  CB4  OB4   SING  N  N  36  
LM2  CB4  HB4   SING  N  N  37  
LM2  CB5  CB6   SING  N  N  38  
LM2  CB5  OB5   SING  N  N  39  
LM2  CB5  HB5   SING  N  N  40  
LM2  CB6  OB6   SING  N  N  41  
LM2  CB6  HB61  SING  N  N  42  
LM2  CB6  HB62  SING  N  N  43  
LM2  OB2  H5    SING  N  N  44  
LM2  OB3  H4    SING  N  N  45  
LM2  OB4  CD1   SING  N  N  46  
LM2  OB6  HB6   SING  N  N  47  
LM2  CD1  CD2   SING  N  N  48  
LM2  CD1  OD5   SING  N  N  49  
LM2  CD1  HD1   SING  N  N  50  
LM2  CD2  CD3   SING  N  N  51  
LM2  CD2  OD2   SING  N  N  52  
LM2  CD2  HD2   SING  N  N  53  
LM2  CD3  CD4   SING  N  N  54  
LM2  CD3  OD3   SING  N  N  55  
LM2  CD3  HD3   SING  N  N  56  
LM2  CD4  CD5   SING  N  N  57  
LM2  CD4  OD4   SING  N  N  58  
LM2  CD4  HD4   SING  N  N  59  
LM2  CD5  CD6   SING  N  N  60  
LM2  CD5  OD5   SING  N  N  61  
LM2  CD5  HD5   SING  N  N  62  
LM2  CD6  OD6   SING  N  N  63  
LM2  CD6  HD61  SING  N  N  64  
LM2  CD6  HD62  SING  N  N  65  
LM2  OD2  H3    SING  N  N  66  
LM2  OD3  H2    SING  N  N  67  
LM2  OD4  CD7   SING  N  N  68  
LM2  OD6  HD6   SING  N  N  69  
LM2  CD7  HD71  SING  N  N  70  
LM2  CD7  HD72  SING  N  N  71  
LM2  CD7  HD73  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LM2  SMILES            ACDLabs               10.04  "O(C1C(O)C(O)C(=N\O)\NC1CO)C3OC(C(OC2OC(CO)C(OC)C(O)C2O)C(O)C3O)CO"  
LM2  InChI             InChI                 1.03   "InChI=1S/C19H34N2O15/c1-32-15-6(3-23)33-19(12(29)9(15)26)36-16-7(4-24)34-18(13(30)10(16)27)35-14-5(2-22)20-17(21-31)11(28)8(14)25/h5-16,18-19,22-31H,2-4H2,1H3,(H,20,21)/t5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15-,16-,18-,19-/m1/s1"  
LM2  InChIKey          InChI                 1.03   INFXBQXKGPGIEV-PXPLVWFRSA-N  
LM2  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1[C@H](O)[C@@H](O)[C@H](O[C@@H]1CO)O[C@H]2[C@H](O)[C@@H](O)[C@H](O[C@@H]2CO)O[C@@H]3[C@@H](CO)NC(=N\O)/[C@H](O)[C@H]3O"  
LM2  SMILES            CACTVS                3.385  "CO[CH]1[CH](O)[CH](O)[CH](O[CH]1CO)O[CH]2[CH](O)[CH](O)[CH](O[CH]2CO)O[CH]3[CH](CO)NC(=NO)[CH](O)[CH]3O"  
LM2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "CO[C@@H]1[C@H](O[C@@H]([C@@H]([C@H]1O)O)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)O[C@@H]3[C@H](N/C(=N\O)/[C@@H]([C@H]3O)O)CO)CO)CO"  
LM2  SMILES            "OpenEye OEToolkits"  1.7.5  "COC1C(OC(C(C1O)O)OC2C(OC(C(C2O)O)OC3C(NC(=NO)C(C3O)O)CO)CO)CO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LM2  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R,3R,4R,5S,6Z)-4,5-dihydroxy-6-(hydroxyimino)-2-(hydroxymethyl)piperidin-3-yl 4-O-(4-O-methyl-alpha-D-glucopyranosyl)-alpha-D-glucopyranoside"  
LM2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2Z,3S,4R,5R,6R)-5-[(2S,3R,4R,5S,6R)-5-[(2R,3R,4R,5S,6R)-3,4-dihydroxy-6-(hydroxymethyl)-5-methoxy-oxan-2-yl]oxy-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-hydroxyimino-6-(hydroxymethyl)piperidine-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LM2  "Create component"     2004-08-05  RCSB  
LM2  "Modify descriptor"    2011-06-04  RCSB  
LM2  "Modify descriptor"    2012-01-05  RCSB  
LM2  "Modify coordinates"   2012-01-05  RCSB  
LM2  "Modify linking type"  2020-07-23  RCSB  
LM2  "Modify synonyms"      2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LM2
_pdbx_chem_comp_synonyms.name        "4'-O-METHYL-MALTOSYL-ALPHA (1,4)-D-GLUCONHYDROXIMO-1,5-LACTAM"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
