data_LR2
# 
_chem_comp.id                                    LR2 
_chem_comp.name                                  "~{N}-pyridin-2-yl-2-selanyl-benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H10 N2 O Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-09-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        277.181 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LR2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6SPJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LR2 C8  C1  C  0 1 Y N N N N N 23.081 -0.444 31.184 -1.132 2.431  -0.032 C8  LR2 1  
LR2 O1  O1  O  0 1 N N N N N N 23.928 2.820  32.387 0.403  -0.812 -0.056 O1  LR2 2  
LR2 C11 C2  C  0 1 Y N N N N N 22.672 0.968  28.850 -3.415 0.858  0.064  C11 LR2 3  
LR2 C10 C3  C  0 1 Y N N N N N 22.661 -0.408 28.837 -3.516 2.238  0.065  C10 LR2 4  
LR2 C1  C4  C  0 1 N N N N N N 23.343 1.740  32.458 0.310  0.400  -0.064 C1  LR2 5  
LR2 C2  C5  C  0 1 Y N N N N N 23.247 1.691  34.908 2.679  0.563  -0.042 C2  LR2 6  
LR2 C3  C6  C  0 1 Y N N N N N 23.590 0.901  36.006 3.818  1.358  0.017  C3  LR2 7  
LR2 C4  C7  C  0 1 Y N N N N N 23.857 1.539  37.195 5.060  0.752  0.079  C4  LR2 8  
LR2 C5  C8  C  0 1 Y N N N N N 23.790 2.915  37.269 5.120  -0.636 0.080  C5  LR2 9  
LR2 C7  C9  C  0 1 Y N N N N N 23.072 0.953  31.219 -1.021 1.039  -0.023 C7  LR2 10 
LR2 C9  C10 C  0 1 Y N N N N N 22.854 -1.115 30.004 -2.377 3.022  0.012  C9  LR2 11 
LR2 C12 C11 C  0 1 Y N N N N N 22.881 1.655  30.032 -2.175 0.255  0.025  C12 LR2 12 
LR2 SE1 SE1 SE 0 0 N N N N N N 22.929 3.562  30.220 -2.033 -1.700 0.024  SE1 LR2 13 
LR2 N1  N1  N  0 1 N N N N N N 22.959 1.186  33.635 1.422  1.161  -0.111 N1  LR2 14 
LR2 N2  N2  N  0 1 Y N N N N N 23.194 3.026  34.953 2.777  -0.757 -0.038 N2  LR2 15 
LR2 C6  C12 C  0 1 Y N N N N N 23.455 3.611  36.135 3.948  -1.363 0.020  C6  LR2 16 
LR2 H1  H1  H  0 1 N N N N N N 23.268 -1.001 32.090 -0.243 3.044  -0.069 H1  LR2 17 
LR2 H2  H2  H  0 1 N N N N N N 22.516 1.515  27.932 -4.308 0.252  0.093  H2  LR2 18 
LR2 H3  H3  H  0 1 N N N N N N 22.500 -0.936 27.909 -4.490 2.705  0.096  H3  LR2 19 
LR2 H4  H4  H  0 1 N N N N N N 23.644 -0.175 35.925 3.734  2.435  0.013  H4  LR2 20 
LR2 H5  H5  H  0 1 N N N N N N 24.119 0.963  38.070 5.962  1.344  0.125  H5  LR2 21 
LR2 H6  H6  H  0 1 N N N N N N 23.996 3.431  38.195 6.074  -1.140 0.127  H6  LR2 22 
LR2 H7  H7  H  0 1 N N N N N N 22.827 -2.195 29.993 -2.464 4.098  0.005  H7  LR2 23 
LR2 H8  H8  H  0 1 N N N N N N 23.172 3.908  31.617 -2.060 -2.000 -1.507 H8  LR2 24 
LR2 H9  H9  H  0 1 N N N N N N 22.423 0.343  33.589 1.347  2.124  -0.192 H9  LR2 25 
LR2 H10 H10 H  0 1 N N N N N N 23.398 4.688  36.195 3.990  -2.442 0.021  H10 LR2 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LR2 C10 C11 DOUB Y N 1  
LR2 C10 C9  SING Y N 2  
LR2 C11 C12 SING Y N 3  
LR2 C9  C8  DOUB Y N 4  
LR2 C12 SE1 SING N N 5  
LR2 C12 C7  DOUB Y N 6  
LR2 C8  C7  SING Y N 7  
LR2 C7  C1  SING N N 8  
LR2 O1  C1  DOUB N N 9  
LR2 C1  N1  SING N N 10 
LR2 N1  C2  SING N N 11 
LR2 C2  N2  DOUB Y N 12 
LR2 C2  C3  SING Y N 13 
LR2 N2  C6  SING Y N 14 
LR2 C3  C4  DOUB Y N 15 
LR2 C6  C5  DOUB Y N 16 
LR2 C4  C5  SING Y N 17 
LR2 C8  H1  SING N N 18 
LR2 C11 H2  SING N N 19 
LR2 C10 H3  SING N N 20 
LR2 C3  H4  SING N N 21 
LR2 C4  H5  SING N N 22 
LR2 C5  H6  SING N N 23 
LR2 C9  H7  SING N N 24 
LR2 SE1 H8  SING N N 25 
LR2 N1  H9  SING N N 26 
LR2 C6  H10 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LR2 InChI            InChI                1.03  "InChI=1S/C12H10N2OSe/c15-12(9-5-1-2-6-10(9)16)14-11-7-3-4-8-13-11/h1-8,16H,(H,13,14,15)" 
LR2 InChIKey         InChI                1.03  IIISTDSZDJBBTA-UHFFFAOYSA-N                                                               
LR2 SMILES_CANONICAL CACTVS               3.385 "[SeH]c1ccccc1C(=O)Nc2ccccn2"                                                             
LR2 SMILES           CACTVS               3.385 "[SeH]c1ccccc1C(=O)Nc2ccccn2"                                                             
LR2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)Nc2ccccn2)[SeH]"                                                         
LR2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)Nc2ccccn2)[SeH]"                                                         
# 
_pdbx_chem_comp_identifier.comp_id           LR2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-pyridin-2-yl-2-selanyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LR2 "Create component" 2019-09-02 PDBE 
LR2 "Initial release"  2020-03-18 RCSB 
LR2 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LR2 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               SE1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
