data_MY2
# 
_chem_comp.id                                    MY2 
_chem_comp.name                                  "{1-[(3S)-4-(BENZYLOXY)-3-HYDROXY-4-OXOBUTANOYL]HYDRAZINO}ACETIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H16 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-05-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        296.276 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MY2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MY2 C2   C2   C 0 1 N N N N N N 35.077 34.526 32.192 -0.945 -0.266 0.248  C2   MY2 1  
MY2 C3   C3   C 0 1 N N S N N N 34.495 35.951 32.072 -0.339 -1.504 -0.416 C3   MY2 2  
MY2 C4   C4   C 0 1 N N N N N N 35.606 36.929 32.286 1.022  -1.774 0.173  C4   MY2 3  
MY2 O5   O5   O 0 1 N N N N N N 36.428 37.144 31.387 1.217  -2.783 0.808  O5   MY2 4  
MY2 O6   O6   O 0 1 N N N N N N 35.631 37.539 33.518 2.019  -0.892 -0.009 O6   MY2 5  
MY2 C    C7   C 0 1 N N N Y N Y 34.105 33.357 32.011 -2.250 0.076  -0.424 C7   MY2 6  
MY2 O    O8   O 0 1 N N N Y N Y 33.037 33.414 32.626 -2.655 -0.604 -1.343 O8   MY2 7  
MY2 N9   N9   N 0 1 N N N Y N N 34.441 32.294 31.209 -2.967 1.137  -0.004 N9   MY2 8  
MY2 C10  C10  C 0 1 N N N N N N 33.477 31.164 31.087 -4.235 1.469  -0.657 C10  MY2 9  
MY2 C12  C12  C 0 1 Y N N N N N 36.486 40.574 35.477 4.366  1.071  1.056  C12  MY2 10 
MY2 C13  C13  C 0 1 Y N N N N N 36.258 41.147 36.800 5.219  2.111  0.738  C13  MY2 11 
MY2 C14  C14  C 0 1 Y N N N N N 35.949 40.277 37.941 5.967  2.062  -0.423 C14  MY2 12 
MY2 C15  C15  C 0 1 Y N N N N N 35.867 38.822 37.749 5.862  0.972  -1.267 C15  MY2 13 
MY2 C16  C16  C 0 1 Y N N N N N 36.098 38.246 36.418 5.012  -0.070 -0.947 C16  MY2 14 
MY2 C17  C17  C 0 1 Y N N N N N 36.408 39.120 35.278 4.260  -0.018 0.212  C17  MY2 15 
MY2 C18  C18  C 0 1 N N N N N N 33.026 30.787 29.736 -5.362 0.750  0.039  C18  MY2 16 
MY2 C9   C9   C 0 1 N N N N N N 36.659 38.527 33.888 3.330  -1.152 0.558  C9   MY2 17 
MY2 O19  O19  O 0 1 N N N N N N 32.807 31.692 28.900 -5.130 0.035  0.984  O19  MY2 18 
MY2 N    N16  N 0 1 N N N Y Y N 35.711 32.263 30.510 -2.511 1.902  1.031  N16  MY2 19 
MY2 O20  O20  O 0 1 N N N N N N 32.878 29.556 29.516 -6.624 0.906  -0.390 O20  MY2 20 
MY2 O57  O57  O 0 1 N N N N N N 33.957 36.153 30.757 -1.188 -2.631 -0.188 O57  MY2 21 
MY2 H2C1 H2C1 H 0 0 N N N N N N 35.794 34.436 31.363 -0.256 0.573  0.150  H2C1 MY2 22 
MY2 H2C2 H2C2 H 0 0 N Y N N N N 35.503 34.437 33.202 -1.123 -0.470 1.304  H2C2 MY2 23 
MY2 H3   H3   H 0 1 N N N N N N 33.697 36.088 32.817 -0.243 -1.332 -1.488 H3   MY2 24 
MY2 H101 H101 H 0 0 N N N N N N 32.568 31.512 31.600 -4.401 2.545  -0.603 H101 MY2 25 
MY2 H102 H102 H 0 0 N N N N N N 33.970 30.279 31.516 -4.198 1.159  -1.702 H102 MY2 26 
MY2 H12  H12  H 0 1 N N N N N N 36.713 41.220 34.642 3.782  1.110  1.963  H12  MY2 27 
MY2 H13  H13  H 0 1 N N N N N N 36.317 42.216 36.940 5.302  2.963  1.397  H13  MY2 28 
MY2 H14  H14  H 0 1 N N N N N N 35.782 40.705 38.919 6.633  2.875  -0.672 H14  MY2 29 
MY2 H15  H15  H 0 1 N N N N N N 35.637 38.178 38.585 6.446  0.933  -2.175 H15  MY2 30 
MY2 H16  H16  H 0 1 N N N N N N 36.040 37.177 36.277 4.930  -0.922 -1.606 H16  MY2 31 
MY2 H9C1 H9C1 H 0 0 N N N N N N 36.625 39.347 33.155 3.247  -1.236 1.641  H9C1 MY2 32 
MY2 H9C2 H9C2 H 0 0 N N N N N N 37.640 38.030 33.889 3.724  -2.083 0.150  H9C2 MY2 33 
MY2 H    H161 H 0 0 N N N Y Y N 36.245 33.072 30.754 -1.634 1.499  1.326  H161 MY2 34 
MY2 H2   H162 H 0 0 N Y N Y Y N 35.549 32.256 29.523 -2.298 2.811  0.648  H162 MY2 35 
MY2 H20  H20  H 0 1 N N N N N N 32.577 29.427 28.624 -7.348 0.445  0.057  H20  MY2 36 
MY2 H57  H57  H 0 1 N N N N N N 33.009 36.198 30.806 -1.245 -2.748 0.770  H57  MY2 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MY2 C2  C3   SING N N 1  
MY2 C2  C    SING N N 2  
MY2 C2  H2C1 SING N N 3  
MY2 C2  H2C2 SING N N 4  
MY2 C3  C4   SING N N 5  
MY2 C3  O57  SING N N 6  
MY2 C3  H3   SING N N 7  
MY2 C4  O5   DOUB N N 8  
MY2 C4  O6   SING N N 9  
MY2 O6  C9   SING N N 10 
MY2 C   O    DOUB N N 11 
MY2 C   N9   SING N N 12 
MY2 N9  C10  SING N N 13 
MY2 N9  N    SING N N 14 
MY2 C10 C18  SING N N 15 
MY2 C10 H101 SING N N 16 
MY2 C10 H102 SING N N 17 
MY2 C12 C13  SING Y N 18 
MY2 C12 C17  DOUB Y N 19 
MY2 C12 H12  SING N N 20 
MY2 C13 C14  DOUB Y N 21 
MY2 C13 H13  SING N N 22 
MY2 C14 C15  SING Y N 23 
MY2 C14 H14  SING N N 24 
MY2 C15 C16  DOUB Y N 25 
MY2 C15 H15  SING N N 26 
MY2 C16 C17  SING Y N 27 
MY2 C16 H16  SING N N 28 
MY2 C17 C9   SING N N 29 
MY2 C18 O19  DOUB N N 30 
MY2 C18 O20  SING N N 31 
MY2 C9  H9C1 SING N N 32 
MY2 C9  H9C2 SING N N 33 
MY2 N   H    SING N N 34 
MY2 N   H2   SING N N 35 
MY2 O20 H20  SING N N 36 
MY2 O57 H57  SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MY2 SMILES           ACDLabs              10.04 "O=C(O)CN(N)C(=O)CC(O)C(=O)OCc1ccccc1"                                                                                   
MY2 SMILES_CANONICAL CACTVS               3.341 "NN(CC(O)=O)C(=O)C[C@H](O)C(=O)OCc1ccccc1"                                                                               
MY2 SMILES           CACTVS               3.341 "NN(CC(O)=O)C(=O)C[CH](O)C(=O)OCc1ccccc1"                                                                                
MY2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)COC(=O)[C@H](CC(=O)N(CC(=O)O)N)O"                                                                             
MY2 SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)COC(=O)C(CC(=O)N(CC(=O)O)N)O"                                                                                 
MY2 InChI            InChI                1.03  "InChI=1S/C13H16N2O6/c14-15(7-12(18)19)11(17)6-10(16)13(20)21-8-9-4-2-1-3-5-9/h1-5,10,16H,6-8,14H2,(H,18,19)/t10-/m0/s1" 
MY2 InChIKey         InChI                1.03  VKMHPJLHWKEYJZ-JTQLQIEISA-N                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MY2 "SYSTEMATIC NAME" ACDLabs              10.04 "{1-[(3S)-4-(benzyloxy)-3-hydroxy-4-oxobutanoyl]hydrazino}acetic acid"        
MY2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[amino-[(3S)-3-hydroxy-4-oxo-4-phenylmethoxy-butanoyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MY2 "Create component"  2006-05-22 EBI  
MY2 "Modify descriptor" 2011-06-04 RCSB 
MY2 "Modify backbone"   2023-11-03 PDBE 
MY2 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MY2 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
