data_NF2
# 
_chem_comp.id                                    NF2 
_chem_comp.name                                  "(1S)-1,4-ANHYDRO-1-(2,4-DIFLUORO-5-METHYLPHENYL)-5-O-PHOSPHONO-D-RIBITOL" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H15 F2 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-03-07 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.214 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     NF2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NF2 F2     F2   F 0 1 N N N 16.456 9.018  4.886 -0.051 4.004  0.371  F2     NF2 1  
NF2 C2     C2   C 0 1 Y N N 15.389 8.747  5.594 1.116  3.363  0.520  C2     NF2 2  
NF2 C3     C3   C 0 1 Y N N 15.419 8.957  6.844 2.293  3.962  0.068  C3     NF2 3  
NF2 C4     C4   C 0 1 Y N N 14.404 8.669  7.553 3.513  3.302  0.218  C4     NF2 4  
NF2 F4     F4   F 0 1 N N N 14.351 8.860  8.868 4.637  3.885  -0.220 F4     NF2 5  
NF2 C1     C1   C 0 1 Y N N 14.327 8.203  4.958 1.158  2.105  1.122  C1     NF2 6  
NF2 C6     C6   C 0 1 Y N N 13.289 7.908  5.633 2.380  1.446  1.272  C6     NF2 7  
NF2 C5     C5   C 0 1 Y N N 13.240 8.109  6.887 3.556  2.045  0.820  C5     NF2 8  
NF2 CM     CM   C 0 1 N N N 12.054 7.733  7.720 4.860  1.337  0.982  CM     NF2 9  
NF2 "C1'"  C1*  C 0 1 N N S 14.404 7.906  3.457 -0.108 1.457  1.611  "C1'"  NF2 10 
NF2 "O4'"  O4*  O 0 1 N N N 13.087 7.814  2.874 0.104  0.632  2.780  "O4'"  NF2 11 
NF2 "C2'"  C2*  C 0 1 N N R 15.101 6.583  3.176 -0.759 0.546  0.574  "C2'"  NF2 12 
NF2 "O2'"  O2*  O 0 1 N N N 15.689 6.419  1.896 -1.572 1.268  -0.329 "O2'"  NF2 13 
NF2 "C3'"  C3*  C 0 1 N N S 13.914 5.644  3.287 -1.550 -0.419 1.436  "C3'"  NF2 14 
NF2 "O3'"  O3*  O 0 1 N N N 14.207 4.372  2.725 -2.781 0.169  1.856  "O3'"  NF2 15 
NF2 "C4'"  C4*  C 0 1 N N R 12.934 6.443  2.433 -0.639 -0.600 2.643  "C4'"  NF2 16 
NF2 "C5'"  C5*  C 0 1 N N N 11.473 6.014  2.467 0.354  -1.740 2.473  "C5'"  NF2 17 
NF2 "O5'"  O5*  O 0 1 N N N 11.004 6.072  3.827 1.158  -1.819 3.638  "O5'"  NF2 18 
NF2 P      P    P 0 1 N N N 9.431  5.986  4.194 2.303  -2.961 3.710  P      NF2 19 
NF2 OP1    O1P  O 0 1 N N N 8.799  4.931  3.379 3.107  -2.973 4.978  OP1    NF2 20 
NF2 OP2    O2P  O 0 1 N N N 9.385  5.917  5.671 3.155  -2.736 2.354  OP2    NF2 21 
NF2 OP3    O3P  O 0 1 N Y N ?      ?      ?     1.479  -4.320 3.411  OP3    NF2 22 
NF2 H3     H3   H 0 1 N N N 16.301 9.378  7.303 2.259  4.941  -0.400 H3     NF2 23 
NF2 H6     H6   H 0 1 N N N 12.434 7.479  5.131 2.415  0.466  1.742  H6     NF2 24 
NF2 HM1    1HM  H 0 1 N N N 11.650 6.771  7.370 5.671  1.925  0.536  HM1    NF2 25 
NF2 HM2    2HM  H 0 1 N N N 11.281 8.510  7.629 5.093  1.171  2.042  HM2    NF2 26 
NF2 HM3    3HM  H 0 1 N N N 12.359 7.641  8.773 4.839  0.350  0.502  HM3    NF2 27 
NF2 "H1'"  H1*  H 0 1 N N N 14.972 8.739  3.017 -0.789 2.266  1.901  "H1'"  NF2 28 
NF2 "H2'"  H2*  H 0 1 N N N 15.961 6.442  3.847 0.001  -0.001 0.003  "H2'"  NF2 29 
NF2 "HO2'" 2HO* H 0 0 N N N 15.007 6.382  1.236 -1.152 1.209  -1.205 "HO2'" NF2 30 
NF2 "H3'"  H3*  H 0 1 N N N 13.572 5.399  4.303 -1.796 -1.352 0.922  "H3'"  NF2 31 
NF2 "HO3'" H3T  H 0 0 N Y N 15.145 4.289  2.600 -3.060 0.760  1.141  "HO3'" NF2 32 
NF2 "H4'"  H4*  H 0 1 N N N 13.186 6.274  1.376 -1.206 -0.749 3.568  "H4'"  NF2 33 
NF2 "H5'"  1H5* H 0 1 N N N 11.376 4.988  2.082 0.994  -1.555 1.609  "H5'"  NF2 34 
NF2 "H5''" 2H5* H 0 0 N N N 10.874 6.689  1.839 -0.177 -2.684 2.340  "H5''" NF2 35 
NF2 HOP2   2HOP H 0 0 N N N 10.270 5.902  6.015 3.960  -3.276 2.204  HOP2   NF2 36 
NF2 HOP3   3HOP H 0 0 N N N -0.924 -0.050 0.216 1.941  -5.182 3.489  HOP3   NF2 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NF2 F2    C2     SING N N 1  
NF2 C2    C3     DOUB Y N 2  
NF2 C2    C1     SING Y N 3  
NF2 C3    C4     SING Y N 4  
NF2 C3    H3     SING N N 5  
NF2 C4    F4     SING N N 6  
NF2 C4    C5     DOUB Y N 7  
NF2 C1    C6     DOUB Y N 8  
NF2 C1    "C1'"  SING N N 9  
NF2 C6    C5     SING Y N 10 
NF2 C6    H6     SING N N 11 
NF2 C5    CM     SING N N 12 
NF2 CM    HM1    SING N N 13 
NF2 CM    HM2    SING N N 14 
NF2 CM    HM3    SING N N 15 
NF2 "C1'" "O4'"  SING N N 16 
NF2 "C1'" "C2'"  SING N N 17 
NF2 "C1'" "H1'"  SING N N 18 
NF2 "O4'" "C4'"  SING N N 19 
NF2 "C2'" "O2'"  SING N N 20 
NF2 "C2'" "C3'"  SING N N 21 
NF2 "C2'" "H2'"  SING N N 22 
NF2 "O2'" "HO2'" SING N N 23 
NF2 "C3'" "O3'"  SING N N 24 
NF2 "C3'" "C4'"  SING N N 25 
NF2 "C3'" "H3'"  SING N N 26 
NF2 "O3'" "HO3'" SING N N 27 
NF2 "C4'" "C5'"  SING N N 28 
NF2 "C4'" "H4'"  SING N N 29 
NF2 "C5'" "O5'"  SING N N 30 
NF2 "C5'" "H5'"  SING N N 31 
NF2 "C5'" "H5''" SING N N 32 
NF2 "O5'" P      SING N N 33 
NF2 P     OP1    DOUB N N 34 
NF2 P     OP2    SING N N 35 
NF2 P     OP3    SING N N 36 
NF2 OP2   HOP2   SING N N 37 
NF2 OP3   HOP3   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NF2 SMILES           ACDLabs              10.04 "O=P(OCC2OC(c1cc(c(F)cc1F)C)C(O)C2O)(O)O"                                                                                                          
NF2 SMILES_CANONICAL CACTVS               3.341 "Cc1cc([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c(F)cc1F"                                                                                      
NF2 SMILES           CACTVS               3.341 "Cc1cc([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c(F)cc1F"                                                                                            
NF2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(c(cc1F)F)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                      
NF2 SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cc(c(cc1F)F)C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                        
NF2 InChI            InChI                1.03  "InChI=1S/C12H15F2O7P/c1-5-2-6(8(14)3-7(5)13)12-11(16)10(15)9(21-12)4-20-22(17,18)19/h2-3,9-12,15-16H,4H2,1H3,(H2,17,18,19)/t9-,10-,11-,12+/m1/s1" 
NF2 InChIKey         InChI                1.03  DMROPYMHNVLDPZ-KKOKHZNYSA-N                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NF2 "SYSTEMATIC NAME" ACDLabs              10.04 "(1S)-1,4-anhydro-1-(2,4-difluoro-5-methylphenyl)-5-O-phosphono-D-ribitol"                              
NF2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-5-(2,4-difluoro-5-methyl-phenyl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NF2 "Create component"  2006-03-07 RCSB 
NF2 "Modify descriptor" 2011-06-04 RCSB 
# 
