data_OO2
#

_chem_comp.id                                   OO2
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-(cyclopentylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H23 Cl N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-23
_chem_comp.pdbx_modified_date                   2021-01-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       463.810
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OO2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YE1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OO2  C1   C2    C   0  1  Y  N  N  24.970  31.892   0.833  -3.497  -1.736   0.681  C1   OO2   1  
OO2  C2   C4    C   0  1  Y  N  N  23.864  30.079   1.407  -1.481  -0.696   0.304  C2   OO2   2  
OO2  N1   N1    N   0  1  Y  N  N  25.825  31.269   0.023  -4.176  -0.614   0.512  N1   OO2   3  
OO2  N2   N3    N   0  1  Y  N  N  23.958  31.407   1.540  -2.184  -1.789   0.584  N2   OO2   4  
OO2  C3   C6    C   0  1  Y  N  N  25.702  29.924  -0.080  -3.557   0.528   0.229  C3   OO2   5  
OO2  O1   O3*   O   0  1  N  N  N  18.291  29.491   2.086   3.058  -3.644  -1.259  O1   OO2   6  
OO2  C4   C3*   C   0  1  N  N  S  19.661  29.120   2.132   2.697  -2.262  -1.211  C4   OO2   7  
OO2  C5   C2*   C   0  1  N  N  R  20.677  30.264   2.166   1.164  -2.106  -1.102  C5   OO2   8  
OO2  O2   O2*   O   0  1  N  N  N  20.249  31.434   2.845   0.531  -3.387  -1.079  O2   OO2   9  
OO2  C6   C4*   C   0  1  N  N  R  19.951  28.385   3.428   3.235  -1.608   0.081  C6   OO2  10  
OO2  C7   C5*   C   0  1  N  N  N  19.516  26.945   3.401   4.538  -0.859  -0.204  C7   OO2  11  
OO2  O3   O5*   O   0  1  N  N  N  19.727  26.393   4.670   5.078  -0.360   1.021  O3   OO2  12  
OO2  C8   C08   C   0  1  N  N  N  19.818  24.975   4.612   6.303   0.359   0.867  C8   OO2  13  
OO2  P1   P09   P   0  1  N  N  N  21.525  24.423   4.468   5.956   2.006   0.164  P1   OO2  14  
OO2  O4   O10   O   0  1  N  N  N  21.826  23.676   3.214   5.058   2.751   1.074  O4   OO2  15  
OO2  O5   O11   O   0  1  N  N  N  21.760  23.570   5.734   7.336   2.816  -0.010  O5   OO2  16  
OO2  O6   O12   O   0  1  N  N  N  22.327  25.729   4.559   5.247   1.838  -1.272  O6   OO2  17  
OO2  O7   O4*   O   0  1  N  N  N  21.382  28.477   3.591   2.201  -0.683   0.483  O7   OO2  18  
OO2  C9   C1*   C   0  1  N  N  R  21.863  29.622   2.896   0.956  -1.375   0.243  C9   OO2  19  
OO2  N3   N9    N   0  1  Y  N  N  22.957  29.237   2.006  -0.148  -0.418   0.138  N3   OO2  20  
OO2  C10  C8    C   0  1  Y  N  N  23.272  27.980   1.565  -0.039   0.912  -0.142  C10  OO2  21  
OO2  N4   N7    N   0  1  Y  N  N  24.291  27.945   0.740  -1.219   1.460  -0.159  N4   OO2  22  
OO2  C11  C5    C   0  1  Y  N  N  24.677  29.272   0.638  -2.157   0.520   0.111  C11  OO2  23  
OO2  CL1  CL22  CL  0  0  N  N  N  25.295  33.586   1.101  -4.368  -3.192   1.050  CL1  OO2  24  
OO2  N5   N6    N   0  1  N  N  N  26.564  29.233  -0.866  -4.276   1.697   0.054  N5   OO2  25  
OO2  C12  C26   C   0  1  N  N  N  27.401  29.753  -1.948  -5.736   1.686   0.180  C12  OO2  26  
OO2  C13  C27   C   0  1  N  N  N  28.871  29.832  -1.549  -6.242   3.087   0.566  C13  OO2  27  
OO2  C14  C28   C   0  1  N  N  N  29.393  28.425  -1.732  -7.178   3.546  -0.572  C14  OO2  28  
OO2  C15  C29   C   0  1  N  N  N  28.647  27.912  -2.920  -7.653   2.226  -1.229  C15  OO2  29  
OO2  C16  C30   C   0  1  N  N  N  27.431  28.810  -3.146  -6.381   1.342  -1.178  C16  OO2  30  
OO2  H1   H1    H   0  1  N  N  N  17.751  28.709   2.068   2.695  -4.119  -2.020  H1   OO2  31  
OO2  H2   H2    H   0  1  N  N  N  19.904  28.459   1.287   3.073  -1.740  -2.091  H2   OO2  32  
OO2  H3   H3    H   0  1  N  N  N  20.980  30.504   1.136   0.782  -1.506  -1.928  H3   OO2  33  
OO2  H4   H4    H   0  1  N  N  N  20.938  32.087   2.817   0.680  -3.913  -1.876  H4   OO2  34  
OO2  H5   H5    H   0  1  N  N  N  19.443  28.902   4.255   3.390  -2.362   0.852  H5   OO2  35  
OO2  H6   H6    H   0  1  N  N  N  18.448  26.885   3.143   5.254  -1.538  -0.667  H6   OO2  36  
OO2  H7   H7    H   0  1  N  N  N  20.105  26.393   2.654   4.339  -0.026  -0.879  H7   OO2  37  
OO2  H8   H8    H   0  1  N  N  N  19.253  24.617   3.739   6.783   0.473   1.839  H8   OO2  38  
OO2  H9   H9    H   0  1  N  N  N  19.383  24.552   5.529   6.965  -0.189   0.196  H9   OO2  39  
OO2  H10  H10   H   0  1  N  N  N  22.060  22.705   5.482   7.227   3.703  -0.380  H10  OO2  40  
OO2  H11  H11   H   0  1  N  N  N  22.874  25.820   3.788   5.780   1.357  -1.920  H11  OO2  41  
OO2  H12  H12   H   0  1  N  N  N  22.243  30.353   3.625   0.762  -2.094   1.039  H12  OO2  42  
OO2  H13  H13   H   0  1  N  N  N  22.730  27.097   1.869   0.889   1.433  -0.324  H13  OO2  43  
OO2  H14  H14   H   0  1  N  N  N  26.005  28.524  -1.295  -3.814   2.525  -0.153  H14  OO2  44  
OO2  H15  H15   H   0  1  N  N  N  27.049  30.746  -2.266  -6.039   0.959   0.933  H15  OO2  45  
OO2  H16  H16   H   0  1  N  N  N  29.413  30.535  -2.199  -6.793   3.039   1.506  H16  OO2  46  
OO2  H17  H17   H   0  1  N  N  N  28.972  30.150  -0.501  -5.402   3.775   0.660  H17  OO2  47  
OO2  H18  H18   H   0  1  N  N  N  29.182  27.812  -0.844  -8.027   4.098  -0.168  H18  OO2  48  
OO2  H19  H19   H   0  1  N  N  N  30.476  28.432  -1.924  -6.633   4.158  -1.290  H19  OO2  49  
OO2  H20  H20   H   0  1  N  N  N  28.318  26.879  -2.735  -8.460   1.775  -0.651  H20  OO2  50  
OO2  H21  H21   H   0  1  N  N  N  29.297  27.936  -3.807  -7.966   2.398  -2.258  H21  OO2  51  
OO2  H22  H22   H   0  1  N  N  N  27.540  29.378  -4.081  -5.707   1.597  -1.996  H22  OO2  52  
OO2  H23  H23   H   0  1  N  N  N  26.510  28.209  -3.187  -6.649   0.286  -1.217  H23  OO2  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OO2  C16  C15  SING  N  N   1  
OO2  C16  C12  SING  N  N   2  
OO2  C15  C14  SING  N  N   3  
OO2  C12  C13  SING  N  N   4  
OO2  C12  N5   SING  N  N   5  
OO2  C14  C13  SING  N  N   6  
OO2  N5   C3   SING  N  N   7  
OO2  C3   N1   DOUB  Y  N   8  
OO2  C3   C11  SING  Y  N   9  
OO2  N1   C1   SING  Y  N  10  
OO2  C11  N4   SING  Y  N  11  
OO2  C11  C2   DOUB  Y  N  12  
OO2  N4   C10  DOUB  Y  N  13  
OO2  C1   CL1  SING  N  N  14  
OO2  C1   N2   DOUB  Y  N  15  
OO2  C2   N2   SING  Y  N  16  
OO2  C2   N3   SING  Y  N  17  
OO2  C10  N3   SING  Y  N  18  
OO2  N3   C9   SING  N  N  19  
OO2  O1   C4   SING  N  N  20  
OO2  C4   C5   SING  N  N  21  
OO2  C4   C6   SING  N  N  22  
OO2  C5   O2   SING  N  N  23  
OO2  C5   C9   SING  N  N  24  
OO2  C9   O7   SING  N  N  25  
OO2  O4   P1   DOUB  N  N  26  
OO2  C7   C6   SING  N  N  27  
OO2  C7   O3   SING  N  N  28  
OO2  C6   O7   SING  N  N  29  
OO2  P1   O6   SING  N  N  30  
OO2  P1   C8   SING  N  N  31  
OO2  P1   O5   SING  N  N  32  
OO2  C8   O3   SING  N  N  33  
OO2  O1   H1   SING  N  N  34  
OO2  C4   H2   SING  N  N  35  
OO2  C5   H3   SING  N  N  36  
OO2  O2   H4   SING  N  N  37  
OO2  C6   H5   SING  N  N  38  
OO2  C7   H6   SING  N  N  39  
OO2  C7   H7   SING  N  N  40  
OO2  C8   H8   SING  N  N  41  
OO2  C8   H9   SING  N  N  42  
OO2  O5   H10  SING  N  N  43  
OO2  O6   H11  SING  N  N  44  
OO2  C9   H12  SING  N  N  45  
OO2  C10  H13  SING  N  N  46  
OO2  N5   H14  SING  N  N  47  
OO2  C12  H15  SING  N  N  48  
OO2  C13  H16  SING  N  N  49  
OO2  C13  H17  SING  N  N  50  
OO2  C14  H18  SING  N  N  51  
OO2  C14  H19  SING  N  N  52  
OO2  C15  H20  SING  N  N  53  
OO2  C15  H21  SING  N  N  54  
OO2  C16  H22  SING  N  N  55  
OO2  C16  H23  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OO2  InChI             InChI                 1.03   "InChI=1S/C16H23ClN5O7P/c17-16-20-13(19-8-3-1-2-4-8)10-14(21-16)22(6-18-10)15-12(24)11(23)9(29-15)5-28-7-30(25,26)27/h6,8-9,11-12,15,23-24H,1-5,7H2,(H,19,20,21)(H2,25,26,27)/t9-,11-,12-,15-/m1/s1"  
OO2  InChIKey          InChI                 1.03   ALDWNWOVOJESRL-SDBHATRESA-N  
OO2  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COC[P](O)(O)=O)n2cnc3c(NC4CCCC4)nc(Cl)nc23"  
OO2  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1COC[P](O)(O)=O)n2cnc3c(NC4CCCC4)nc(Cl)nc23"  
OO2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4"  
OO2  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(nc(nc2n1C3C(C(C(O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4"  
#
_pdbx_chem_comp_identifier.comp_id          OO2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-(cyclopentylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OO2  "Create component"  2020-03-23  PDBE  
OO2  "Initial release"   2021-01-20  RCSB  
##
