data_RI2
#

_chem_comp.id                                   RI2
_chem_comp.name                                 "1,5-di-O-phosphono-alpha-D-ribofuranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H12 O11 P2"
_chem_comp.mon_nstd_parent_comp_id              RIB
_chem_comp.pdbx_synonyms                        "1,5-di-O-phosphono-alpha-D-ribose; 1,5-di-O-phosphono-D-ribose; 1,5-di-O-phosphono-ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-01-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       310.090
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RI2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3Q88
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  RI2  "1,5-di-O-phosphono-alpha-D-ribose"  PDB  ?  
2  RI2  "1,5-di-O-phosphono-D-ribose"        PDB  ?  
3  RI2  "1,5-di-O-phosphono-ribose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RI2  P     P     P  0  1  N  N  N  43.965  52.743  18.504  -3.965  -0.787   0.082  P     RI2   1  
RI2  C1    C1    C  0  1  N  N  R  44.586  57.341  16.005   1.663   0.632  -0.566  C1    RI2   2  
RI2  O1    O1    O  0  1  N  N  N  44.227  58.638  15.633   2.646   0.095   0.321  O1    RI2   3  
RI2  C2    C2    C  0  1  N  N  R  45.055  56.501  14.841   1.588   2.165  -0.401  C2    RI2   4  
RI2  O2    O2    O  0  1  N  N  N  44.321  56.855  13.657   2.083   2.564   0.878  O2    RI2   5  
RI2  C3    C3    C  0  1  N  N  S  44.729  55.171  15.354   0.063   2.435  -0.512  C3    RI2   6  
RI2  O3    O3    O  0  1  N  N  N  44.768  54.162  14.368  -0.307   3.608   0.216  O3    RI2   7  
RI2  C4    C4    C  0  1  N  N  R  43.327  55.458  15.896  -0.511   1.160   0.155  C4    RI2   8  
RI2  O4    O4    O  0  1  N  N  N  43.420  56.698  16.581   0.373   0.099  -0.242  O4    RI2   9  
RI2  C5    C5    C  0  1  N  N  N  42.861  54.383  16.793  -1.929   0.887  -0.352  C5    RI2  10  
RI2  O5    O5    O  0  1  N  N  N  43.818  54.197  17.862  -2.483  -0.222   0.358  O5    RI2  11  
RI2  PA    PA    P  0  1  N  N  N  44.573  59.870  16.613   3.483  -1.242  -0.004  PA    RI2  12  
RI2  O1A   O1A   O  0  1  N  N  N  46.033  59.745  16.976   2.483  -2.502  -0.055  O1A   RI2  13  
RI2  O1P   O1P   O  0  1  N  N  N  44.482  51.826  17.351  -4.946   0.312   0.223  O1P   RI2  14  
RI2  O2A   O2A   O  0  1  N  N  N  44.323  61.087  15.648   4.159  -1.095  -1.312  O2A   RI2  15  
RI2  O2P   O2P   O  0  1  N  N  N  44.977  52.871  19.703  -4.042  -1.388  -1.410  O2P   RI2  16  
RI2  O3A   O3A   O  0  1  N  N  N  43.577  59.855  17.783   4.585  -1.477   1.146  O3A   RI2  17  
RI2  O3P   O3P   O  0  1  N  N  N  42.547  52.305  18.993  -4.304  -1.948   1.145  O3P   RI2  18  
RI2  H1    H1    H  0  1  N  N  N  45.421  57.419  16.717   1.918   0.383  -1.596  H1    RI2  19  
RI2  H2    H2    H  0  1  N  N  N  46.108  56.609  14.541   2.130   2.668  -1.202  H2    RI2  20  
RI2  HO2   HO2   H  0  1  N  Y  N  44.620  56.324  12.928   3.011   2.336   1.030  HO2   RI2  21  
RI2  H3    H3    H  0  1  N  N  N  45.436  54.765  16.093  -0.249   2.508  -1.554  H3    RI2  22  
RI2  HO3   HO3   H  0  1  N  Y  N  44.548  53.326  14.761   0.116   4.418  -0.101  HO3   RI2  23  
RI2  H4    H4    H  0  1  N  N  N  42.590  55.505  15.081  -0.510   1.267   1.239  H4    RI2  24  
RI2  H51   H5    H  0  1  N  N  N  41.885  54.658  17.219  -2.548   1.769  -0.190  H51   RI2  25  
RI2  H52   H5A   H  0  1  N  N  N  42.762  53.447  16.223  -1.896   0.657  -1.417  H52   RI2  26  
RI2  HO1A  HO1A  H  0  0  N  N  N  46.527  60.434  16.547   2.005  -2.659   0.771  HO1A  RI2  27  
RI2  HO2P  HO2P  H  0  0  N  N  N  45.753  52.355  19.519  -3.424  -2.114  -1.574  HO2P  RI2  28  
RI2  HO3A  HO3A  H  0  0  N  N  N  42.986  60.595  17.706   5.128  -2.267   1.015  HO3A  RI2  29  
RI2  HO3P  HO3P  H  0  0  N  N  N  42.257  51.552  18.492  -5.183  -2.335   1.038  HO3P  RI2  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RI2  O1P  P     DOUB  N  N   1  
RI2  O5   P     SING  N  N   2  
RI2  P    O3P   SING  N  N   3  
RI2  P    O2P   SING  N  N   4  
RI2  C2   C1    SING  N  N   5  
RI2  O1   C1    SING  N  N   6  
RI2  C1   O4    SING  N  N   7  
RI2  C1   H1    SING  N  N   8  
RI2  O1   PA    SING  N  N   9  
RI2  O2   C2    SING  N  N  10  
RI2  C2   C3    SING  N  N  11  
RI2  C2   H2    SING  N  N  12  
RI2  O2   HO2   SING  N  N  13  
RI2  O3   C3    SING  N  N  14  
RI2  C3   C4    SING  N  N  15  
RI2  C3   H3    SING  N  N  16  
RI2  O3   HO3   SING  N  N  17  
RI2  C4   O4    SING  N  N  18  
RI2  C4   C5    SING  N  N  19  
RI2  C4   H4    SING  N  N  20  
RI2  C5   O5    SING  N  N  21  
RI2  C5   H51   SING  N  N  22  
RI2  C5   H52   SING  N  N  23  
RI2  O2A  PA    DOUB  N  N  24  
RI2  PA   O1A   SING  N  N  25  
RI2  PA   O3A   SING  N  N  26  
RI2  O1A  HO1A  SING  N  N  27  
RI2  O2P  HO2P  SING  N  N  28  
RI2  O3A  HO3A  SING  N  N  29  
RI2  O3P  HO3P  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RI2  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC1OC(OP(=O)(O)O)C(O)C1O"  
RI2  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(O)=O)O[P](O)(O)=O"  
RI2  SMILES            CACTVS                3.370  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)O[P](O)(O)=O"  
RI2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@@H]1[C@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)OP(=O)(O)O"  
RI2  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C1C(C(C(O1)OP(=O)(O)O)O)O)OP(=O)(O)O"  
RI2  InChI             InChI                 1.03   "InChI=1S/C5H12O11P2/c6-3-2(1-14-17(8,9)10)15-5(4(3)7)16-18(11,12)13/h2-7H,1H2,(H2,8,9,10)(H2,11,12,13)/t2-,3-,4-,5-/m1/s1"  
RI2  InChIKey          InChI                 1.03   AAAFZMYJJHWUPN-TXICZTDVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RI2  "SYSTEMATIC NAME"            ACDLabs               12.01  "1,5-di-O-phosphono-alpha-D-ribofuranose"  
RI2  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.0  "[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl] dihydrogen phosphate"  
RI2  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-Ribf1PO35PO3  
#
_pdbx_chem_comp_related.comp_id            RI2
_pdbx_chem_comp_related.related_comp_id    RIB
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  RI2  C1   RIB  C1   "Carbohydrate core"  
 2  RI2  C2   RIB  C2   "Carbohydrate core"  
 3  RI2  C3   RIB  C3   "Carbohydrate core"  
 4  RI2  C4   RIB  C4   "Carbohydrate core"  
 5  RI2  C5   RIB  C5   "Carbohydrate core"  
 6  RI2  O1   RIB  O1   "Carbohydrate core"  
 7  RI2  O2   RIB  O2   "Carbohydrate core"  
 8  RI2  O3   RIB  O3   "Carbohydrate core"  
 9  RI2  O4   RIB  O4   "Carbohydrate core"  
10  RI2  O5   RIB  O5   "Carbohydrate core"  
11  RI2  H1   RIB  H1   "Carbohydrate core"  
12  RI2  H2   RIB  H2   "Carbohydrate core"  
13  RI2  H3   RIB  H3   "Carbohydrate core"  
14  RI2  H4   RIB  H4   "Carbohydrate core"  
15  RI2  H51  RIB  H51  "Carbohydrate core"  
16  RI2  H52  RIB  H52  "Carbohydrate core"  
17  RI2  HO2  RIB  HO2  "Carbohydrate core"  
18  RI2  HO3  RIB  HO3  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RI2  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
RI2  "CARBOHYDRATE RING"                    furanose  PDB  ?  
RI2  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
RI2  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RI2  "Create component"          2011-01-07  RCSB  
RI2  "Modify descriptor"         2011-06-04  RCSB  
RI2  "Other modification"        2020-07-03  RCSB  
RI2  "Modify parent residue"     2020-07-17  RCSB  
RI2  "Modify synonyms"           2020-07-17  RCSB  
RI2  "Modify internal type"      2020-07-17  RCSB  
RI2  "Modify linking type"       2020-07-17  RCSB  
RI2  "Modify atom id"            2020-07-17  RCSB  
RI2  "Modify component atom id"  2020-07-17  RCSB  
RI2  "Modify leaving atom flag"  2020-07-17  RCSB  
##
