data_VM2
# 
_chem_comp.id                                    VM2 
_chem_comp.name                                  "(1R,2S,3S,4R,5R)-4-(cyclohexylmethylamino)-5-(hydroxymethyl)cyclopentane-1,2,3-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H25 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-01-17 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        259.342 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VM2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZJ6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VM2 C1   C1   C 0 1 N N N -19.318 37.732 20.548 -2.707 -0.254 -0.421 C1   VM2 1  
VM2 C2   C2   C 0 1 N N N -18.335 38.584 19.709 -3.884 0.372  -1.172 C2   VM2 2  
VM2 C3   C3   C 0 1 N N N -17.748 39.858 20.346 -5.195 -0.206 -0.637 C3   VM2 3  
VM2 C4   C4   C 0 1 N N N -18.507 40.310 21.607 -5.319 0.104  0.856  C4   VM2 4  
VM2 C5   C5   C 0 1 N N N -18.580 39.163 22.628 -4.142 -0.522 1.606  C5   VM2 5  
VM2 C6   C6   C 0 1 N N N -19.000 37.786 22.050 -2.830 0.057  1.072  C6   VM2 6  
VM2 C2B  C2B  C 0 1 N N S -18.193 34.025 17.147 1.433  1.399  0.022  C2B  VM2 7  
VM2 C3B  C3B  C 0 1 N N S -17.250 32.805 17.334 2.972  1.275  0.141  C3B  VM2 8  
VM2 C4B  C4B  C 0 1 N N R -16.715 33.027 18.738 3.179  -0.251 0.307  C4B  VM2 9  
VM2 C5B  C5B  C 0 1 N N R -18.049 33.314 19.470 2.127  -0.880 -0.630 C5B  VM2 10 
VM2 C6B  C6B  C 0 1 N N N -17.938 33.698 20.965 1.552  -2.148 0.005  C6B  VM2 11 
VM2 O2B  O2B  O 0 1 N N N -19.314 33.687 16.288 1.080  2.606  -0.658 O2B  VM2 12 
VM2 O3B  O3B  O 0 1 N N N -16.243 32.557 16.327 3.449  1.979  1.289  O3B  VM2 13 
VM2 O4B  O4B  O 0 1 N N N -16.021 31.919 19.335 4.497  -0.624 -0.099 O4B  VM2 14 
VM2 O6B  O6B  O 0 1 N N N -16.788 34.543 21.207 2.573  -3.144 0.090  O6B  VM2 15 
VM2 CAR  CAR  C 0 1 N N R -18.714 34.358 18.571 1.017  0.169  -0.811 CAR  VM2 16 
VM2 N2B  N2B  N 0 1 N N N -18.534 35.765 19.041 -0.262 -0.362 -0.321 N2B  VM2 17 
VM2 C7B  C7B  C 0 1 N N N -19.353 36.247 20.169 -1.395 0.325  -0.956 C7B  VM2 18 
VM2 H1   H1   H 0 1 N N N -20.328 38.143 20.401 -2.714 -1.334 -0.570 H1   VM2 19 
VM2 H21C H21C H 0 0 N N N -17.489 37.935 19.439 -3.876 1.452  -1.024 H21C VM2 20 
VM2 H22C H22C H 0 0 N N N -18.867 38.891 18.796 -3.796 0.151  -2.236 H22C VM2 21 
VM2 H61C H61C H 0 0 N N N -19.899 37.458 22.592 -1.992 -0.389 1.606  H61C VM2 22 
VM2 H62C H62C H 0 0 N N N -18.178 37.080 22.242 -2.822 1.137  1.220  H62C VM2 23 
VM2 H7B1 H7B1 H 0 0 N N N -19.036 35.682 21.058 -1.348 0.182  -2.036 H7B1 VM2 24 
VM2 H7B2 H7B2 H 0 0 N N N -20.399 36.002 19.932 -1.349 1.390  -0.728 H7B2 VM2 25 
VM2 H31C H31C H 0 0 N N N -16.701 39.662 20.620 -6.034 0.240  -1.172 H31C VM2 26 
VM2 H32C H32C H 0 0 N N N -17.787 40.670 19.605 -5.203 -1.286 -0.785 H32C VM2 27 
VM2 H41C H41C H 0 0 N N N -17.983 41.165 22.059 -5.311 1.184  1.004  H41C VM2 28 
VM2 H42C H42C H 0 0 N N N -19.527 40.612 21.327 -6.253 -0.308 1.237  H42C VM2 29 
VM2 H51C H51C H 0 0 N N N -17.586 39.051 23.085 -4.230 -0.300 2.670  H51C VM2 30 
VM2 H52C H52C H 0 0 N N N -19.309 39.443 23.402 -4.149 -1.602 1.458  H52C VM2 31 
VM2 H2B  H2B  H 0 1 N N N -17.626 34.878 16.747 0.970  1.369  1.008  H2B  VM2 32 
VM2 H3B  H3B  H 0 1 N N N -17.899 31.918 17.380 3.460  1.635  -0.765 H3B  VM2 33 
VM2 HA   HA   H 0 1 N N N -19.877 34.446 16.187 1.369  3.411  -0.207 HA   VM2 34 
VM2 HAR  HAR  H 0 1 N N N -19.793 34.145 18.573 0.930  0.442  -1.863 HAR  VM2 35 
VM2 H4B  H4B  H 0 1 N N N -16.091 33.933 18.756 2.998  -0.550 1.340  H4B  VM2 36 
VM2 HB   HB   H 0 1 N N N -15.740 31.787 16.564 4.407  1.932  1.409  HB   VM2 37 
VM2 H5B  H5B  H 0 1 N N N -18.655 32.397 19.414 2.579  -1.117 -1.593 H5B  VM2 38 
VM2 HC   HC   H 0 1 N N N -15.729 32.160 20.206 5.201  -0.210 0.420  HC   VM2 39 
VM2 H6B1 H6B1 H 0 0 N N N -18.848 34.237 21.265 1.183  -1.919 1.005  H6B1 VM2 40 
VM2 H6B2 H6B2 H 0 0 N N N -17.841 32.781 21.564 0.732  -2.521 -0.609 H6B2 VM2 41 
VM2 H6B  H6B  H 0 1 N N N -16.745 34.763 22.130 2.279  -3.976 0.484  H6B  VM2 42 
VM2 HD   HD   H 0 1 N N N -18.726 36.362 18.262 -0.318 -0.298 0.684  HD   VM2 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VM2 C1  C2   SING N N 1  
VM2 C1  C6   SING N N 2  
VM2 C1  C7B  SING N N 3  
VM2 C2  C3   SING N N 4  
VM2 C3  C4   SING N N 5  
VM2 C4  C5   SING N N 6  
VM2 C5  C6   SING N N 7  
VM2 C2B C3B  SING N N 8  
VM2 C2B O2B  SING N N 9  
VM2 C2B CAR  SING N N 10 
VM2 C3B C4B  SING N N 11 
VM2 C3B O3B  SING N N 12 
VM2 C4B C5B  SING N N 13 
VM2 C4B O4B  SING N N 14 
VM2 C5B C6B  SING N N 15 
VM2 C5B CAR  SING N N 16 
VM2 C6B O6B  SING N N 17 
VM2 N2B C7B  SING N N 18 
VM2 N2B CAR  SING N N 19 
VM2 C1  H1   SING N N 20 
VM2 C2  H21C SING N N 21 
VM2 C2  H22C SING N N 22 
VM2 C6  H61C SING N N 23 
VM2 C6  H62C SING N N 24 
VM2 C7B H7B1 SING N N 25 
VM2 C7B H7B2 SING N N 26 
VM2 C3  H31C SING N N 27 
VM2 C3  H32C SING N N 28 
VM2 C4  H41C SING N N 29 
VM2 C4  H42C SING N N 30 
VM2 C5  H51C SING N N 31 
VM2 C5  H52C SING N N 32 
VM2 C2B H2B  SING N N 33 
VM2 C3B H3B  SING N N 34 
VM2 O2B HA   SING N N 35 
VM2 CAR HAR  SING N N 36 
VM2 C4B H4B  SING N N 37 
VM2 O3B HB   SING N N 38 
VM2 C5B H5B  SING N N 39 
VM2 O4B HC   SING N N 40 
VM2 C6B H6B1 SING N N 41 
VM2 C6B H6B2 SING N N 42 
VM2 O6B H6B  SING N N 43 
VM2 N2B HD   SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VM2 SMILES           ACDLabs              12.01 "OC2C(NCC1CCCCC1)C(C(O)C2O)CO"                                                                                
VM2 InChI            InChI                1.03  "InChI=1S/C13H25NO4/c15-7-9-10(12(17)13(18)11(9)16)14-6-8-4-2-1-3-5-8/h8-18H,1-7H2/t9-,10+,11+,12-,13-/m0/s1" 
VM2 InChIKey         InChI                1.03  PETSRUBXPDOLKZ-QWQWKMKNSA-N                                                                                   
VM2 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1NCC2CCCCC2"                                                        
VM2 SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]1NCC2CCCCC2"                                                                 
VM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1CCC(CC1)CN[C@@H]2[C@@H]([C@H]([C@@H]([C@H]2O)O)O)CO"                                                       
VM2 SMILES           "OpenEye OEToolkits" 1.9.2 "C1CCC(CC1)CNC2C(C(C(C2O)O)O)CO"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VM2 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,3S,4R,5R)-4-[(cyclohexylmethyl)amino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol" 
VM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(1R,2S,3S,4R,5R)-4-(cyclohexylmethylamino)-5-(hydroxymethyl)cyclopentane-1,2,3-triol"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VM2 "Create component"  2013-01-17 EBI  
VM2 "Initial release"   2014-01-29 RCSB 
VM2 "Modify descriptor" 2014-09-05 RCSB 
# 
