data_VP2
# 
_chem_comp.id                                    VP2 
_chem_comp.name                                  "3-(2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N-(2,2-difluoroethyl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H17 F2 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-14 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        385.364 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VP2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U6R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VP2 O1  O1  O 0 1 N N N N N N 43.985 -18.958 22.109 -4.616 1.586  -0.498 O1  VP2 1  
VP2 C2  C1  C 0 1 N N N N N N 45.868 -18.099 24.361 -6.887 0.134  -0.493 C2  VP2 2  
VP2 N1  N1  N 0 1 N N N N N N 44.977 -17.358 23.490 -5.566 -0.384 -0.127 N1  VP2 3  
VP2 C1  C2  C 0 1 N N N N N N 44.126 -17.818 22.401 -4.490 0.427  -0.163 C1  VP2 4  
VP2 C15 C3  C 0 1 Y N N N N N 46.987 -11.643 26.146 5.629  -1.546 1.721  C15 VP2 5  
VP2 C16 C4  C 0 1 Y N N N N N 47.878 -13.767 25.780 3.921  -0.825 0.223  C16 VP2 6  
VP2 C17 C5  C 0 1 Y N N N N N 48.615 -14.672 26.555 3.771  -0.574 -1.125 C17 VP2 7  
VP2 C3  C6  C 0 1 N N N N N N 45.248 -19.107 25.273 -7.925 -0.983 -0.368 C3  VP2 8  
VP2 N2  N2  N 0 1 Y N N N N N 47.677 -12.731 26.563 5.219  -1.232 0.446  N2  VP2 9  
VP2 C5  C7  C 0 1 N N N N N N 44.480 -15.802 20.948 -2.094 1.012  0.088  C5  VP2 10 
VP2 C4  C8  C 0 1 N N N N N N 43.406 -16.693 21.649 -3.132 -0.105 0.213  C4  VP2 11 
VP2 C6  C9  C 0 1 Y N N N N N 46.606 -14.756 21.377 0.237  1.378  0.387  C6  VP2 12 
VP2 C7  C10 C 0 1 Y N N N N N 46.757 -14.519 20.022 0.024  2.691  0.001  C7  VP2 13 
VP2 N3  N3  N 0 1 N N N N N N 50.066 -14.905 30.058 5.568  -0.610 -4.232 N3  VP2 14 
VP2 C10 C11 C 0 1 Y N N N N N 48.882 -14.032 21.804 2.579  1.846  0.660  C10 VP2 15 
VP2 C11 C12 C 0 1 Y N N N N N 47.652 -14.498 22.267 1.520  0.954  0.721  C11 VP2 16 
VP2 C12 C13 C 0 1 Y N N N N N 47.364 -13.711 24.480 3.016  -0.732 1.311  C12 VP2 17 
VP2 C13 C14 C 0 1 Y N N N N N 46.657 -12.632 24.041 3.444  -1.060 2.563  C13 VP2 18 
VP2 C14 C15 C 0 1 Y N N N N N 46.462 -11.582 24.867 4.777  -1.467 2.759  C14 VP2 19 
VP2 C9  C16 C 0 1 Y N N N N N 49.037 -13.802 20.445 2.360  3.153  0.268  C9  VP2 20 
VP2 C8  C17 C 0 1 Y N N N N N 47.974 -14.042 19.569 1.084  3.576  -0.058 C8  VP2 21 
VP2 C18 C18 C 0 1 Y N N N N N 48.810 -14.050 27.845 5.017  -0.838 -1.735 C18 VP2 22 
VP2 C19 C19 C 0 1 N N N N N N 49.533 -14.555 29.109 5.324  -0.711 -3.127 C19 VP2 23 
VP2 C20 C20 C 0 1 Y N N N N N 48.172 -12.805 27.746 5.884  -1.240 -0.738 C20 VP2 24 
VP2 F1  F1  F 0 1 N N N N N N 46.372 -19.443 26.013 -7.583 -2.036 -1.224 F1  VP2 25 
VP2 F2  F2  F 0 1 N N N N N N 44.728 -20.062 24.420 -7.955 -1.446 0.952  F2  VP2 26 
VP2 O2  O2  O 0 1 N N N N N N 45.390 -15.218 21.861 -0.805 0.507  0.445  O2  VP2 27 
VP2 O3  O3  O 0 1 N N N N N N 47.523 -14.780 23.631 1.734  -0.332 1.106  O3  VP2 28 
VP2 H1  H1  H 0 1 N N N N N N 46.589 -18.630 23.722 -7.153 0.954  0.174  H1  VP2 29 
VP2 H2  H2  H 0 1 N N N N N N 46.401 -17.369 24.988 -6.863 0.495  -1.521 H2  VP2 30 
VP2 H3  H3  H 0 1 N N N N N N 44.941 -16.374 23.665 -5.465 -1.311 0.141  H3  VP2 31 
VP2 H4  H4  H 0 1 N N N N N N 46.844 -10.812 26.821 6.647  -1.864 1.890  H4  VP2 32 
VP2 H5  H5  H 0 1 N N N N N N 48.969 -15.645 26.248 2.871  -0.240 -1.621 H5  VP2 33 
VP2 H6  H6  H 0 1 N N N N N N 44.470 -18.637 25.893 -8.908 -0.598 -0.640 H6  VP2 34 
VP2 H7  H7  H 0 1 N N N N N N 45.045 -16.425 20.239 -2.070 1.372  -0.940 H7  VP2 35 
VP2 H8  H8  H 0 1 N N N N N N 43.966 -14.998 20.401 -2.360 1.832  0.755  H8  VP2 36 
VP2 H9  H9  H 0 1 N N N N N N 42.824 -16.085 22.358 -3.155 -0.466 1.241  H9  VP2 37 
VP2 H10 H10 H 0 1 N N N N N N 42.731 -17.123 20.895 -2.865 -0.925 -0.454 H10 VP2 38 
VP2 H11 H11 H 0 1 N N N N N N 45.944 -14.702 19.335 -0.972 3.024  -0.255 H11 VP2 39 
VP2 H12 H12 H 0 1 N N N N N N 49.697 -13.854 22.490 3.576  1.520  0.919  H12 VP2 40 
VP2 H13 H13 H 0 1 N N N N N N 46.255 -12.617 23.039 2.767  -0.995 3.402  H13 VP2 41 
VP2 H14 H14 H 0 1 N N N N N N 45.909 -10.715 24.537 5.119  -1.718 3.752  H14 VP2 42 
VP2 H15 H15 H 0 1 N N N N N N 49.979 -13.437 20.063 3.186  3.847  0.221  H15 VP2 43 
VP2 H16 H16 H 0 1 N N N N N N 48.106 -13.851 18.514 0.917  4.599  -0.360 H16 VP2 44 
VP2 H17 H17 H 0 1 N N N N N N 48.109 -12.052 28.518 6.919  -1.516 -0.876 H17 VP2 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VP2 C8  C7  DOUB Y N 1  
VP2 C8  C9  SING Y N 2  
VP2 C7  C6  SING Y N 3  
VP2 C9  C10 DOUB Y N 4  
VP2 C5  C4  SING N N 5  
VP2 C5  O2  SING N N 6  
VP2 C6  O2  SING N N 7  
VP2 C6  C11 DOUB Y N 8  
VP2 C4  C1  SING N N 9  
VP2 C10 C11 SING Y N 10 
VP2 O1  C1  DOUB N N 11 
VP2 C11 O3  SING N N 12 
VP2 C1  N1  SING N N 13 
VP2 N1  C2  SING N N 14 
VP2 O3  C12 SING N N 15 
VP2 C13 C12 DOUB Y N 16 
VP2 C13 C14 SING Y N 17 
VP2 C2  C3  SING N N 18 
VP2 F2  C3  SING N N 19 
VP2 C12 C16 SING Y N 20 
VP2 C14 C15 DOUB Y N 21 
VP2 C3  F1  SING N N 22 
VP2 C16 C17 DOUB Y N 23 
VP2 C16 N2  SING Y N 24 
VP2 C15 N2  SING Y N 25 
VP2 C17 C18 SING Y N 26 
VP2 N2  C20 SING Y N 27 
VP2 C20 C18 DOUB Y N 28 
VP2 C18 C19 SING N N 29 
VP2 C19 N3  TRIP N N 30 
VP2 C2  H1  SING N N 31 
VP2 C2  H2  SING N N 32 
VP2 N1  H3  SING N N 33 
VP2 C15 H4  SING N N 34 
VP2 C17 H5  SING N N 35 
VP2 C3  H6  SING N N 36 
VP2 C5  H7  SING N N 37 
VP2 C5  H8  SING N N 38 
VP2 C4  H9  SING N N 39 
VP2 C4  H10 SING N N 40 
VP2 C7  H11 SING N N 41 
VP2 C10 H12 SING N N 42 
VP2 C13 H13 SING N N 43 
VP2 C14 H14 SING N N 44 
VP2 C9  H15 SING N N 45 
VP2 C8  H16 SING N N 46 
VP2 C20 H17 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VP2 SMILES           ACDLabs              12.01 "FC(F)CNC(=O)CCOc1ccccc1Oc1cccn2cc(cc12)C#N"                                                                                                     
VP2 InChI            InChI                1.06  "InChI=1S/C20H17F2N3O3/c21-19(22)12-24-20(26)7-9-27-17-4-1-2-5-18(17)28-16-6-3-8-25-13-14(11-23)10-15(16)25/h1-6,8,10,13,19H,7,9,12H2,(H,24,26)" 
VP2 InChIKey         InChI                1.06  PTNLADVCXMBZFS-UHFFFAOYSA-N                                                                                                                      
VP2 SMILES_CANONICAL CACTVS               3.385 "FC(F)CNC(=O)CCOc1ccccc1Oc2cccn3cc(cc23)C#N"                                                                                                     
VP2 SMILES           CACTVS               3.385 "FC(F)CNC(=O)CCOc1ccccc1Oc2cccn3cc(cc23)C#N"                                                                                                     
VP2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)NCC(F)F)Oc2cccn3c2cc(c3)C#N"                                                                                                 
VP2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)NCC(F)F)Oc2cccn3c2cc(c3)C#N"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VP2 "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)-N-(2,2-difluoroethyl)propanamide"   
VP2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2,2-bis(fluoranyl)ethyl]-3-[2-(2-cyanoindolizin-8-yl)oxyphenoxy]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VP2 "Create component" 2023-09-14 RCSB 
VP2 "Initial release"  2023-11-08 RCSB 
# 
