data_VR2
# 
_chem_comp.id                                    VR2 
_chem_comp.name                                  "1-[(3S)-5-(4-iodanylphenoxy)-3-methyl-pentyl]-3-pyridin-4-yl-imidazolidin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 I N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-06 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        465.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VR2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CDW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VR2 CAJ  CAJ  C 0 1 Y N N 102.807 262.170 102.630 -4.068 0.613  -1.786 CAJ  VR2 1  
VR2 CAH  CAH  C 0 1 Y N N 101.653 262.310 103.394 -5.405 0.688  -1.446 CAH  VR2 2  
VR2 CAU  CAU  C 0 1 Y N N 100.531 261.541 103.104 -5.829 0.252  -0.204 CAU  VR2 3  
VR2 IAC  IAC  I 0 1 N N N 98.789  261.697 104.249 -7.857 0.368  0.308  IAC  VR2 4  
VR2 CAI  CAI  C 0 1 Y N N 100.553 260.636 102.051 -4.917 -0.261 0.700  CAI  VR2 5  
VR2 CAK  CAK  C 0 1 Y N N 101.704 260.504 101.285 -3.579 -0.338 0.364  CAK  VR2 6  
VR2 CAV  CAV  C 0 1 Y N N 102.829 261.265 101.574 -3.151 0.098  -0.881 CAV  VR2 7  
VR2 OAS  OAS  O 0 1 N N N 103.952 261.029 100.844 -1.836 0.022  -1.214 OAS  VR2 8  
VR2 CAL  CAL  C 0 1 N N N 105.099 261.771 101.259 -0.948 -0.518 -0.232 CAL  VR2 9  
VR2 CAM  CAM  C 0 1 N N N 106.193 261.452 100.239 0.479  -0.523 -0.783 CAM  VR2 10 
VR2 CAX  CAX  C 0 1 N N S 107.438 262.289 100.532 1.429  -1.102 0.268  CAX  VR2 11 
VR2 CAA  CAA  C 0 1 N N N 108.171 261.686 101.731 1.084  -2.572 0.513  CAA  VR2 12 
VR2 CAN  CAN  C 0 1 N N N 108.344 262.209 99.304  2.871  -0.993 -0.233 CAN  VR2 13 
VR2 CAO  CAO  C 0 1 N N N 109.410 263.300 99.399  3.829  -1.455 0.867  CAO  VR2 14 
VR2 NAY  NAY  N 0 1 N N N 110.247 263.285 98.182  5.209  -1.351 0.387  NAY  VR2 15 
VR2 CAT  CAT  C 0 1 N N N 110.530 264.330 97.408  5.996  -0.275 0.515  CAT  VR2 16 
VR2 OAB  OAB  O 0 1 N N N 110.087 265.458 97.620  5.633  0.751  1.058  OAB  VR2 17 
VR2 CAP  CAP  C 0 1 N N N 110.743 262.063 97.515  5.953  -2.414 -0.305 CAP  VR2 18 
VR2 CAQ  CAQ  C 0 1 N N N 111.851 262.648 96.641  7.332  -1.781 -0.579 CAQ  VR2 19 
VR2 NAZ  NAZ  N 0 1 N N N 111.347 264.019 96.403  7.219  -0.431 -0.008 NAZ  VR2 20 
VR2 CAW  CAW  C 0 1 Y N N 111.793 264.820 95.439  8.228  0.534  -0.007 CAW  VR2 21 
VR2 CAF  CAF  C 0 1 Y N N 112.800 264.366 94.595  8.019  1.787  0.566  CAF  VR2 22 
VR2 CAD  CAD  C 0 1 Y N N 113.406 265.227 93.688  9.041  2.712  0.546  CAD  VR2 23 
VR2 NAR  NAR  N 0 1 Y N N 112.990 266.561 93.618  10.204 2.424  -0.008 NAR  VR2 24 
VR2 CAE  CAE  C 0 1 Y N N 111.982 267.021 94.474  10.440 1.249  -0.561 CAE  VR2 25 
VR2 CAG  CAG  C 0 1 Y N N 111.398 266.153 95.389  9.472  0.267  -0.576 CAG  VR2 26 
VR2 HAJ  HAJ  H 0 1 N N N 103.682 262.761 102.856 -3.738 0.949  -2.758 HAJ  VR2 27 
VR2 HAH  HAH  H 0 1 N N N 101.628 263.015 104.212 -6.119 1.089  -2.151 HAH  VR2 28 
VR2 HAI  HAI  H 0 1 N N N 99.681  260.039 101.829 -5.250 -0.600 1.669  HAI  VR2 29 
VR2 HAK  HAK  H 0 1 N N N 101.724 259.806 100.461 -2.867 -0.739 1.071  HAK  VR2 30 
VR2 HAL1 HAL1 H 0 0 N N N 104.878 262.849 101.260 -0.988 0.094  0.669  HAL1 VR2 31 
VR2 HAL2 HAL2 H 0 0 N N N 105.412 261.460 102.267 -1.249 -1.538 0.007  HAL2 VR2 32 
VR2 HAM1 HAM1 H 0 0 N N N 106.449 260.384 100.301 0.518  -1.135 -1.684 HAM1 VR2 33 
VR2 HAM2 HAM2 H 0 0 N N N 105.827 261.684 99.228  0.780  0.496  -1.023 HAM2 VR2 34 
VR2 HAX  HAX  H 0 1 N N N 107.160 263.333 100.737 1.324  -0.544 1.198  HAX  VR2 35 
VR2 HAA1 HAA1 H 0 0 N N N 109.069 262.282 101.950 1.761  -2.984 1.261  HAA1 VR2 36 
VR2 HAA2 HAA2 H 0 0 N N N 107.506 261.690 102.607 0.057  -2.650 0.869  HAA2 VR2 37 
VR2 HAA3 HAA3 H 0 0 N N N 108.465 260.652 101.499 1.189  -3.130 -0.418 HAA3 VR2 38 
VR2 HAN1 HAN1 H 0 0 N N N 108.829 261.222 99.267  2.998  -1.622 -1.114 HAN1 VR2 39 
VR2 HAN2 HAN2 H 0 0 N N N 107.745 262.357 98.394  3.088  0.043  -0.492 HAN2 VR2 40 
VR2 HAO1 HAO1 H 0 0 N N N 108.922 264.281 99.495  3.701  -0.826 1.748  HAO1 VR2 41 
VR2 HAO2 HAO2 H 0 0 N N N 110.043 263.117 100.280 3.611  -2.492 1.125  HAO2 VR2 42 
VR2 HAP1 HAP1 H 0 0 N N N 111.139 261.338 98.241  6.055  -3.290 0.335  HAP1 VR2 43 
VR2 HAP2 HAP2 H 0 0 N N N 109.959 261.585 96.910  5.461  -2.678 -1.241 HAP2 VR2 44 
VR2 HAQ1 HAQ1 H 0 0 N N N 112.815 262.661 97.170  8.117  -2.343 -0.074 HAQ1 VR2 45 
VR2 HAQ2 HAQ2 H 0 0 N N N 111.957 262.090 95.699  7.524  -1.731 -1.651 HAQ2 VR2 46 
VR2 HAF  HAF  H 0 1 N N N 113.114 263.334 94.645  7.069  2.030  1.020  HAF  VR2 47 
VR2 HAG  HAG  H 0 1 N N N 110.635 266.514 96.063  9.674  -0.694 -1.026 HAG  VR2 48 
VR2 HAD  HAD  H 0 1 N N N 114.193 264.869 93.041  8.888  3.686  0.988  HAD  VR2 49 
VR2 HAE  HAE  H 0 1 N N N 111.658 268.050 94.423  11.406 1.053  -1.003 HAE  VR2 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VR2 CAJ CAH  SING Y N 1  
VR2 CAJ CAV  DOUB Y N 2  
VR2 CAH CAU  DOUB Y N 3  
VR2 CAU IAC  SING N N 4  
VR2 CAU CAI  SING Y N 5  
VR2 CAI CAK  DOUB Y N 6  
VR2 CAK CAV  SING Y N 7  
VR2 CAV OAS  SING N N 8  
VR2 OAS CAL  SING N N 9  
VR2 CAL CAM  SING N N 10 
VR2 CAM CAX  SING N N 11 
VR2 CAX CAA  SING N N 12 
VR2 CAX CAN  SING N N 13 
VR2 CAN CAO  SING N N 14 
VR2 CAO NAY  SING N N 15 
VR2 NAY CAT  SING N N 16 
VR2 NAY CAP  SING N N 17 
VR2 CAT OAB  DOUB N N 18 
VR2 CAT NAZ  SING N N 19 
VR2 CAP CAQ  SING N N 20 
VR2 CAQ NAZ  SING N N 21 
VR2 NAZ CAW  SING N N 22 
VR2 CAW CAF  DOUB Y N 23 
VR2 CAW CAG  SING Y N 24 
VR2 CAF CAD  SING Y N 25 
VR2 CAD NAR  DOUB Y N 26 
VR2 NAR CAE  SING Y N 27 
VR2 CAE CAG  DOUB Y N 28 
VR2 CAJ HAJ  SING N N 29 
VR2 CAH HAH  SING N N 30 
VR2 CAI HAI  SING N N 31 
VR2 CAK HAK  SING N N 32 
VR2 CAL HAL1 SING N N 33 
VR2 CAL HAL2 SING N N 34 
VR2 CAM HAM1 SING N N 35 
VR2 CAM HAM2 SING N N 36 
VR2 CAX HAX  SING N N 37 
VR2 CAA HAA1 SING N N 38 
VR2 CAA HAA2 SING N N 39 
VR2 CAA HAA3 SING N N 40 
VR2 CAN HAN1 SING N N 41 
VR2 CAN HAN2 SING N N 42 
VR2 CAO HAO1 SING N N 43 
VR2 CAO HAO2 SING N N 44 
VR2 CAP HAP1 SING N N 45 
VR2 CAP HAP2 SING N N 46 
VR2 CAQ HAQ1 SING N N 47 
VR2 CAQ HAQ2 SING N N 48 
VR2 CAF HAF  SING N N 49 
VR2 CAG HAG  SING N N 50 
VR2 CAD HAD  SING N N 51 
VR2 CAE HAE  SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VR2 SMILES           ACDLabs              12.01 "Ic3ccc(OCCC(CCN2C(=O)N(c1ccncc1)CC2)C)cc3"                                                                                                     
VR2 InChI            InChI                1.03  "InChI=1S/C20H24IN3O2/c1-16(9-15-26-19-4-2-17(21)3-5-19)8-12-23-13-14-24(20(23)25)18-6-10-22-11-7-18/h2-7,10-11,16H,8-9,12-15H2,1H3/t16-/m0/s1" 
VR2 InChIKey         InChI                1.03  SVYVYARVADIYRJ-INIZCTEOSA-N                                                                                                                     
VR2 SMILES_CANONICAL CACTVS               3.385 "C[C@H](CCOc1ccc(I)cc1)CCN2CCN(C2=O)c3ccncc3"                                                                                                   
VR2 SMILES           CACTVS               3.385 "C[CH](CCOc1ccc(I)cc1)CCN2CCN(C2=O)c3ccncc3"                                                                                                    
VR2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H](CCN1CCN(C1=O)c2ccncc2)CCOc3ccc(cc3)I"                                                                                                  
VR2 SMILES           "OpenEye OEToolkits" 1.9.2 "CC(CCN1CCN(C1=O)c2ccncc2)CCOc3ccc(cc3)I"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VR2 "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(3S)-5-(4-iodophenoxy)-3-methylpentyl]-3-(pyridin-4-yl)imidazolidin-2-one"    
VR2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[(3S)-5-(4-iodanylphenoxy)-3-methyl-pentyl]-3-pyridin-4-yl-imidazolidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VR2 "Create component"  2013-11-06 EBI  
VR2 "Initial release"   2014-02-12 RCSB 
VR2 "Modify descriptor" 2014-09-05 RCSB 
# 
