data_VZ2
# 
_chem_comp.id                                    VZ2 
_chem_comp.name                                  "8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-[3-(2-oxidanylidenepyrrolidin-1-yl)propylamino]pyrido[2,3-d]pyrimidin-7-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H34 Cl N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-20 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        560.090 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VZ2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QLT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VZ2 C   C1  C  0 1 N N N N N N -6.696  -3.128 4.812  10.153  2.913  1.656  C   VZ2 1  
VZ2 O   O1  O  0 1 N N N N N N -17.594 2.796  15.979 -9.358  2.391  1.639  O   VZ2 2  
VZ2 N   N1  N  0 1 Y N N N N N -13.709 -3.102 16.359 -2.528  1.724  -0.517 N   VZ2 3  
VZ2 C3  C2  C  0 1 Y N N N N N -6.584  -6.338 6.809  9.699   0.454  -1.168 C3  VZ2 4  
VZ2 C4  C3  C  0 1 Y N N N N N -7.410  -5.983 7.860  8.329   0.269  -1.102 C4  VZ2 5  
VZ2 C5  C4  C  0 1 Y N N N N N -7.957  -4.705 7.874  7.598   0.961  -0.137 C5  VZ2 6  
VZ2 C6  C5  C  0 1 Y N N N N N -8.825  -4.239 8.979  6.130   0.774  -0.053 C6  VZ2 7  
VZ2 C7  C6  C  0 1 Y N N N N N -8.339  -3.387 9.963  5.394   1.464  0.910  C7  VZ2 8  
VZ2 C8  C7  C  0 1 Y N N N N N -9.145  -2.954 10.999 4.030   1.291  0.989  C8  VZ2 9  
VZ2 C1  C8  C  0 1 Y N N N N N -6.921  -4.159 5.879  9.510   1.971  0.672  C1  VZ2 10 
VZ2 C10 C9  C  0 1 N N N N N N -11.349 -2.808 12.146 1.917   0.239  0.190  C10 VZ2 11 
VZ2 C11 C10 C  0 1 N N N N N N -11.722 -3.547 13.217 1.069   1.212  -0.270 C11 VZ2 12 
VZ2 C12 C11 C  0 1 Y N N N N N -12.527 -3.015 14.265 -0.326  1.005  -0.175 C12 VZ2 13 
VZ2 C13 C12 C  0 1 Y N N N N N -12.953 -3.682 15.419 -1.236  1.970  -0.631 C13 VZ2 14 
VZ2 C14 C13 C  0 1 Y N N N N N -14.046 -1.819 16.142 -2.967  0.589  0.016  C14 VZ2 15 
VZ2 C15 C14 C  0 1 N N N N N N -15.377 0.106  16.935 -5.260  1.405  -0.371 C15 VZ2 16 
VZ2 C16 C15 C  0 1 N N N N N N -15.030 0.981  18.122 -6.698  0.930  -0.150 C16 VZ2 17 
VZ2 C17 C16 C  0 1 N N N N N N -15.706 2.335  18.059 -7.671  1.998  -0.654 C17 VZ2 18 
VZ2 C18 C17 C  0 1 N N N N N N -17.861 1.846  19.361 -9.824  0.771  -1.419 C18 VZ2 19 
VZ2 C19 C18 C  0 1 N N N N N N -19.319 2.129  19.048 -11.297 0.902  -0.971 C19 VZ2 20 
VZ2 C2  C19 C  0 1 Y N N N N N -6.335  -5.422 5.806  10.295  1.321  -0.262 C2  VZ2 21 
VZ2 C20 C20 C  0 1 N N N N N N -19.394 2.225  17.529 -11.142 1.176  0.543  C20 VZ2 22 
VZ2 C21 C21 C  0 1 N N N N N N -17.976 2.462  17.090 -9.761  1.781  0.672  C21 VZ2 23 
VZ2 C22 C22 C  0 1 Y N N N N N -12.948 -1.671 14.160 -0.831  -0.188 0.386  C22 VZ2 24 
VZ2 C23 C23 C  0 1 N N N N N N -12.930 0.504  12.987 -0.515  -2.389 1.421  C23 VZ2 25 
VZ2 C24 C24 C  0 1 N N N N N N -12.060 1.402  13.868 -0.703  -3.432 0.318  C24 VZ2 26 
VZ2 C25 C25 C  0 1 N N N N N N -10.619 1.493  13.377 -1.268  -4.719 0.923  C25 VZ2 27 
VZ2 C26 C26 C  0 1 N N N N N N -9.720  2.282  14.317 -1.456  -5.762 -0.181 C26 VZ2 28 
VZ2 C27 C27 C  0 1 N N N N N N -11.804 -1.425 12.021 1.360   -0.988 0.764  C27 VZ2 29 
VZ2 C28 C28 C  0 1 Y N N N N N -10.956 -4.210 10.084 4.120   -0.261 -0.864 C28 VZ2 30 
VZ2 C29 C29 C  0 1 Y N N N N N -10.152 -4.648 9.054  5.485   -0.087 -0.941 C29 VZ2 31 
VZ2 C9  C30 C  0 1 Y N N N N N -10.479 -3.354 11.072 3.384   0.426  0.105  C9  VZ2 32 
VZ2 N1  N2  N  0 1 N N N N N N -14.818 -1.229 17.075 -4.329  0.383  0.112  N1  VZ2 33 
VZ2 N2  N3  N  0 1 N N N N N N -17.165 2.230  18.131 -9.047  1.544  -0.442 N2  VZ2 34 
VZ2 N3  N4  N  0 1 Y N N N N N -13.705 -1.066 15.082 -2.147  -0.351 0.460  N3  VZ2 35 
VZ2 N4  N5  N  0 1 N N N N N N -12.552 -0.915 13.068 0.026   -1.157 0.842  N4  VZ2 36 
VZ2 N5  N6  N  0 1 N N N N N N -8.355  2.460  13.767 -1.999  -6.997 0.400  N5  VZ2 37 
VZ2 N6  N7  N  0 1 Y N N N N N -7.722  -3.803 6.902  8.206   1.785  0.707  N6  VZ2 38 
VZ2 O1  O2  O  0 1 N N N N N N -11.544 -0.712 11.060 2.107   -1.858 1.176  O1  VZ2 39 
VZ2 CL  CL1 CL 0 0 N N N N N N -12.587 -4.782 10.119 3.317   -1.331 -1.969 CL  VZ2 40 
VZ2 H   H1  H  0 1 N N N N N N -7.253  -2.213 5.062  10.172  3.919  1.238  H   VZ2 41 
VZ2 H1  H2  H  0 1 N N N N N N -5.622  -2.898 4.746  9.580   2.916  2.584  H1  VZ2 42 
VZ2 H2  H3  H  0 1 N N N N N N -7.048  -3.518 3.845  11.173  2.585  1.860  H2  VZ2 43 
VZ2 H4  H4  H  0 1 N N N N N N -6.138  -7.321 6.773  10.292  -0.069 -1.904 H4  VZ2 44 
VZ2 H5  H5  H  0 1 N N N N N N -7.625  -6.684 8.653  7.833   -0.402 -1.788 H5  VZ2 45 
VZ2 H6  H6  H  0 1 N N N N N N -7.312  -3.057 9.918  5.893   2.133  1.594  H6  VZ2 46 
VZ2 H7  H7  H  0 1 N N N N N N -8.739  -2.301 11.757 3.460   1.825  1.735  H7  VZ2 47 
VZ2 H8  H8  H  0 1 N N N N N N -11.398 -4.575 13.279 1.461   2.123  -0.697 H8  VZ2 48 
VZ2 H9  H9  H  0 1 N N N N N N -12.658 -4.712 15.558 -0.888  2.895  -1.066 H9  VZ2 49 
VZ2 H12 H10 H  0 1 N N N N N N -14.975 0.568  16.021 -5.094  1.575  -1.435 H12 VZ2 50 
VZ2 H11 H11 H  0 1 N N N N N N -16.471 0.029  16.856 -5.096  2.333  0.176  H11 VZ2 51 
VZ2 H13 H12 H  0 1 N N N N N N -15.348 0.470  19.043 -6.862  0.002  -0.697 H13 VZ2 52 
VZ2 H14 H13 H  0 1 N N N N N N -13.940 1.131  18.144 -6.865  0.760  0.914  H14 VZ2 53 
VZ2 H15 H14 H  0 1 N N N N N N -15.353 2.947  18.902 -7.507  2.927  -0.108 H15 VZ2 54 
VZ2 H16 H15 H  0 1 N N N N N N -15.433 2.824  17.112 -7.504  2.168  -1.718 H16 VZ2 55 
VZ2 H18 H16 H  0 1 N N N N N N -17.707 0.780  19.583 -9.516  -0.275 -1.403 H18 VZ2 56 
VZ2 H17 H17 H  0 1 N N N N N N -17.517 2.452  20.212 -9.696  1.187  -2.419 H17 VZ2 57 
VZ2 H19 H18 H  0 1 N N N N N N -19.957 1.311  19.414 -11.784 1.738  -1.472 H19 VZ2 58 
VZ2 H20 H19 H  0 1 N N N N N N -19.635 3.076  19.510 -11.841 -0.026 -1.146 H20 VZ2 59 
VZ2 H3  H20 H  0 1 N N N N N N -5.695  -5.681 4.976  11.363  1.480  -0.282 H3  VZ2 60 
VZ2 H22 H21 H  0 1 N N N N N N -19.781 1.289  17.100 -11.901 1.882  0.882  H22 VZ2 61 
VZ2 H21 H22 H  0 1 N N N N N N -20.039 3.062  17.225 -11.205 0.246  1.107  H21 VZ2 62 
VZ2 H24 H23 H  0 1 N N N N N N -12.831 0.835  11.943 -1.477  -2.178 1.890  H24 VZ2 63 
VZ2 H23 H24 H  0 1 N N N N N N -13.977 0.607  13.307 0.177   -2.773 2.171  H23 VZ2 64 
VZ2 H26 H25 H  0 1 N N N N N N -12.493 2.413  13.876 -1.395  -3.048 -0.431 H26 VZ2 65 
VZ2 H25 H26 H  0 1 N N N N N N -12.058 0.996  14.890 0.259   -3.643 -0.150 H25 VZ2 66 
VZ2 H27 H27 H  0 1 N N N N N N -10.217 0.474  13.280 -0.576  -5.103 1.672  H27 VZ2 67 
VZ2 H28 H28 H  0 1 N N N N N N -10.614 1.984  12.393 -2.230  -4.508 1.391  H28 VZ2 68 
VZ2 H30 H29 H  0 1 N N N N N N -10.166 3.273  14.485 -2.148  -5.377 -0.930 H30 VZ2 69 
VZ2 H29 H30 H  0 1 N N N N N N -9.649  1.744  15.274 -0.494  -5.972 -0.649 H29 VZ2 70 
VZ2 H33 H31 H  0 1 N N N N N N -10.554 -5.311 8.302  6.055   -0.617 -1.690 H33 VZ2 71 
VZ2 H10 H32 H  0 1 N N N N N N -15.600 -1.839 17.207 -4.669  -0.440 0.498  H10 VZ2 72 
VZ2 H32 H33 H  0 1 N N N N N N -7.800  2.982  14.414 -2.859  -6.816 0.896  H32 VZ2 73 
VZ2 H34 H34 H  0 1 N N N N N N -7.937  1.564  13.616 -2.132  -7.702 -0.310 H34 VZ2 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VZ2 C   C1  SING N N 1  
VZ2 C1  C2  DOUB Y N 2  
VZ2 C2  C3  SING Y N 3  
VZ2 C3  C4  DOUB Y N 4  
VZ2 C4  C5  SING Y N 5  
VZ2 C5  C6  SING N N 6  
VZ2 C6  C7  DOUB Y N 7  
VZ2 C7  C8  SING Y N 8  
VZ2 C8  C9  DOUB Y N 9  
VZ2 C10 C9  SING N N 10 
VZ2 C10 C11 DOUB N N 11 
VZ2 C11 C12 SING N N 12 
VZ2 C12 C13 DOUB Y N 13 
VZ2 C13 N   SING Y N 14 
VZ2 N   C14 DOUB Y N 15 
VZ2 N1  C14 SING N N 16 
VZ2 C15 N1  SING N N 17 
VZ2 C16 C15 SING N N 18 
VZ2 C17 C16 SING N N 19 
VZ2 N2  C17 SING N N 20 
VZ2 N2  C18 SING N N 21 
VZ2 C18 C19 SING N N 22 
VZ2 C19 C20 SING N N 23 
VZ2 C20 C21 SING N N 24 
VZ2 C21 N2  SING N N 25 
VZ2 O   C21 DOUB N N 26 
VZ2 C14 N3  SING Y N 27 
VZ2 N3  C22 DOUB Y N 28 
VZ2 C12 C22 SING Y N 29 
VZ2 C22 N4  SING N N 30 
VZ2 C23 N4  SING N N 31 
VZ2 C24 C23 SING N N 32 
VZ2 C25 C24 SING N N 33 
VZ2 C26 C25 SING N N 34 
VZ2 N5  C26 SING N N 35 
VZ2 N4  C27 SING N N 36 
VZ2 C27 C10 SING N N 37 
VZ2 O1  C27 DOUB N N 38 
VZ2 C9  C28 SING Y N 39 
VZ2 C28 CL  SING N N 40 
VZ2 C29 C28 DOUB Y N 41 
VZ2 C6  C29 SING Y N 42 
VZ2 N6  C5  DOUB Y N 43 
VZ2 C1  N6  SING Y N 44 
VZ2 C   H   SING N N 45 
VZ2 C   H1  SING N N 46 
VZ2 C   H2  SING N N 47 
VZ2 C3  H4  SING N N 48 
VZ2 C4  H5  SING N N 49 
VZ2 C7  H6  SING N N 50 
VZ2 C8  H7  SING N N 51 
VZ2 C11 H8  SING N N 52 
VZ2 C13 H9  SING N N 53 
VZ2 C15 H12 SING N N 54 
VZ2 C15 H11 SING N N 55 
VZ2 C16 H13 SING N N 56 
VZ2 C16 H14 SING N N 57 
VZ2 C17 H15 SING N N 58 
VZ2 C17 H16 SING N N 59 
VZ2 C18 H18 SING N N 60 
VZ2 C18 H17 SING N N 61 
VZ2 C19 H19 SING N N 62 
VZ2 C19 H20 SING N N 63 
VZ2 C2  H3  SING N N 64 
VZ2 C20 H22 SING N N 65 
VZ2 C20 H21 SING N N 66 
VZ2 C23 H24 SING N N 67 
VZ2 C23 H23 SING N N 68 
VZ2 C24 H26 SING N N 69 
VZ2 C24 H25 SING N N 70 
VZ2 C25 H27 SING N N 71 
VZ2 C25 H28 SING N N 72 
VZ2 C26 H30 SING N N 73 
VZ2 C26 H29 SING N N 74 
VZ2 C29 H33 SING N N 75 
VZ2 N1  H10 SING N N 76 
VZ2 N5  H32 SING N N 77 
VZ2 N5  H34 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VZ2 InChI            InChI                1.06  "InChI=1S/C30H34ClN7O2/c1-20-7-4-8-26(35-20)21-10-11-23(25(31)18-21)24-17-22-19-34-30(33-13-6-15-37-14-5-9-27(37)39)36-28(22)38(29(24)40)16-3-2-12-32/h4,7-8,10-11,17-19H,2-3,5-6,9,12-16,32H2,1H3,(H,33,34,36)" 
VZ2 InChIKey         InChI                1.06  JKMPPFJOKQMACK-UHFFFAOYSA-N                                                                                                                                                                                      
VZ2 SMILES_CANONICAL CACTVS               3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NCCCN5CCCC5=O)nc4N(CCCCN)C3=O"                                                                                                                                               
VZ2 SMILES           CACTVS               3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NCCCN5CCCC5=O)nc4N(CCCCN)C3=O"                                                                                                                                               
VZ2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NCCCN5CCCC5=O"                                                                                                                                               
VZ2 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NCCCN5CCCC5=O"                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           VZ2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-[3-(2-oxidanylidenepyrrolidin-1-yl)propylamino]pyrido[2,3-d]pyrimidin-7-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VZ2 "Create component" 2023-09-20 PDBE 
VZ2 "Initial release"  2023-11-08 RCSB 
# 
