data_WD2
# 
_chem_comp.id                                    WD2 
_chem_comp.name                                  "1-[4-(trifluoromethyl)pyridin-2-yl]piperazine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 F3 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-12 
_chem_comp.pdbx_modified_date                    2024-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        231.218 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WD2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P1E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WD2 F2  F1  F 0 1 N N N N N N 8.574  34.255 -61.021 3.496  0.544  1.363  F2  WD2 1  
WD2 C9  C1  C 0 1 N N N N N N 9.018  34.096 -59.770 2.996  0.552  0.056  C9  WD2 2  
WD2 F   F2  F 0 1 N N N N N N 8.369  34.967 -58.987 2.693  1.866  -0.319 F   WD2 3  
WD2 F1  F3  F 0 1 N N N N N N 10.308 34.374 -59.732 3.958  0.029  -0.814 F1  WD2 4  
WD2 C2  C2  C 0 1 Y N N N N N 8.797  32.639 -59.371 1.748  -0.290 -0.009 C2  WD2 5  
WD2 C1  C3  C 0 1 Y N N N N N 9.240  31.626 -60.214 1.822  -1.647 -0.294 C1  WD2 6  
WD2 C3  C4  C 0 1 Y N N N N N 8.113  32.284 -58.199 0.504  0.271  0.217  C3  WD2 7  
WD2 C4  C5  C 0 1 Y N N N N N 7.916  30.939 -57.861 -0.625 -0.539 0.148  C4  WD2 8  
WD2 N   N1  N 0 1 Y N N N N N 8.362  29.984 -58.732 -0.514 -1.828 -0.130 N   WD2 9  
WD2 C   C6  C 0 1 Y N N N N N 9.013  30.302 -59.857 0.660  -2.391 -0.346 C   WD2 10 
WD2 N1  N2  N 0 1 N N N N N N 7.212  30.532 -56.695 -1.882 0.011  0.374  N1  WD2 11 
WD2 C8  C7  C 0 1 N N N N N N 6.746  31.514 -55.676 -2.136 1.135  -0.538 C8  WD2 12 
WD2 C7  C8  C 0 1 N N N N N N 6.406  30.882 -54.320 -3.492 1.762  -0.205 C7  WD2 13 
WD2 N2  N3  N 0 1 N N N N N N 5.679  29.611 -54.516 -4.543 0.742  -0.325 N2  WD2 14 
WD2 C6  C9  C 0 1 N N N N N N 6.599  28.677 -55.183 -4.288 -0.382 0.587  C6  WD2 15 
WD2 C5  C10 C 0 1 N N N N N N 6.894  29.103 -56.604 -2.932 -1.009 0.254  C5  WD2 16 
WD2 H1  H1  H 0 1 N N N N N N 9.753  31.865 -61.134 2.778  -2.116 -0.472 H1  WD2 17 
WD2 H2  H2  H 0 1 N N N N N N 7.733  33.058 -57.549 0.411  1.322  0.445  H2  WD2 18 
WD2 H3  H3  H 0 1 N N N N N N 9.370  29.513 -60.502 0.713  -3.447 -0.567 H3  WD2 19 
WD2 H4  H4  H 0 1 N N N N N N 7.541  32.259 -55.522 -1.352 1.883  -0.422 H4  WD2 20 
WD2 H5  H5  H 0 1 N N N N N N 5.845  32.014 -56.062 -2.145 0.774  -1.566 H5  WD2 21 
WD2 H6  H6  H 0 1 N N N N N N 7.337  30.686 -53.767 -3.474 2.147  0.814  H6  WD2 22 
WD2 H7  H7  H 0 1 N N N N N N 5.776  31.576 -53.744 -3.696 2.578  -0.899 H7  WD2 23 
WD2 H8  H8  H 0 1 N N N N N N 4.872  29.763 -55.087 -4.629 0.421  -1.278 H8  WD2 24 
WD2 H10 H10 H 0 1 N N N N N N 6.142  27.676 -55.198 -4.280 -0.021 1.615  H10 WD2 25 
WD2 H11 H11 H 0 1 N N N N N N 7.542  28.641 -54.618 -5.073 -1.130 0.471  H11 WD2 26 
WD2 H12 H12 H 0 1 N N N N N N 6.012  28.895 -57.227 -2.950 -1.394 -0.765 H12 WD2 27 
WD2 H13 H13 H 0 1 N N N N N N 7.751  28.524 -56.977 -2.728 -1.824 0.948  H13 WD2 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WD2 F2 C9  SING N N 1  
WD2 C1 C   DOUB Y N 2  
WD2 C1 C2  SING Y N 3  
WD2 C  N   SING Y N 4  
WD2 C9 F1  SING N N 5  
WD2 C9 C2  SING N N 6  
WD2 C9 F   SING N N 7  
WD2 C2 C3  DOUB Y N 8  
WD2 N  C4  DOUB Y N 9  
WD2 C3 C4  SING Y N 10 
WD2 C4 N1  SING N N 11 
WD2 N1 C5  SING N N 12 
WD2 N1 C8  SING N N 13 
WD2 C5 C6  SING N N 14 
WD2 C8 C7  SING N N 15 
WD2 C6 N2  SING N N 16 
WD2 N2 C7  SING N N 17 
WD2 C1 H1  SING N N 18 
WD2 C3 H2  SING N N 19 
WD2 C  H3  SING N N 20 
WD2 C8 H4  SING N N 21 
WD2 C8 H5  SING N N 22 
WD2 C7 H6  SING N N 23 
WD2 C7 H7  SING N N 24 
WD2 N2 H8  SING N N 25 
WD2 C6 H10 SING N N 26 
WD2 C6 H11 SING N N 27 
WD2 C5 H12 SING N N 28 
WD2 C5 H13 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WD2 InChI            InChI                1.06  "InChI=1S/C10H12F3N3/c11-10(12,13)8-1-2-15-9(7-8)16-5-3-14-4-6-16/h1-2,7,14H,3-6H2" 
WD2 InChIKey         InChI                1.06  GRKRSFCFKGOSNB-UHFFFAOYSA-N                                                         
WD2 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)c1ccnc(c1)N2CCNCC2"                                                        
WD2 SMILES           CACTVS               3.385 "FC(F)(F)c1ccnc(c1)N2CCNCC2"                                                        
WD2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(cc1C(F)(F)F)N2CCNCC2"                                                        
WD2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cnc(cc1C(F)(F)F)N2CCNCC2"                                                        
# 
_pdbx_chem_comp_identifier.comp_id           WD2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[4-(trifluoromethyl)pyridin-2-yl]piperazine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WD2 "Create component" 2023-05-12 PDBE 
WD2 "Initial release"  2024-05-08 RCSB 
# 
