data_WN2
# 
_chem_comp.id                                    WN2 
_chem_comp.name                                  "(4~{S},9~{S},10~{S})-4-methyl-9,10,17,19-tetrakis(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H26 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-09 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        366.406 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WN2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QR8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WN2 C1  C1  C 0 1 N N N N N N -14.330 11.790 39.189 -0.236 4.535  0.089  C1  WN2 1  
WN2 C2  C2  C 0 1 N N S N N N -14.182 11.511 40.675 0.039  3.053  -0.186 C2  WN2 2  
WN2 C3  C3  C 0 1 N N N N N N -12.819 11.941 41.244 1.200  2.583  0.692  C3  WN2 3  
WN2 C4  C4  C 0 1 N N N N N N -12.512 11.514 42.692 2.499  2.619  -0.118 C4  WN2 4  
WN2 C5  C5  C 0 1 N N N N N N -11.821 12.568 43.558 3.548  1.726  0.547  C5  WN2 5  
WN2 C6  C6  C 0 1 N N N N N N -12.780 13.578 44.144 3.792  0.507  -0.303 C6  WN2 6  
WN2 C7  C7  C 0 1 N N S N N N -12.309 14.989 44.489 4.107  -0.821 0.335  C7  WN2 7  
WN2 C8  C8  C 0 1 N N S N N N -13.367 16.022 44.065 3.313  -1.928 -0.364 C8  WN2 8  
WN2 C9  C9  C 0 1 N N N N N N -13.401 16.200 42.537 1.889  -1.965 0.193  C9  WN2 9  
WN2 C10 C10 C 0 1 N N N N N N -14.620 16.929 42.022 1.036  -2.928 -0.635 C10 WN2 10 
WN2 C11 C11 C 0 1 N N N N N N -15.940 16.302 42.451 -0.362 -2.341 -0.848 C11 WN2 11 
WN2 O1  O1  O 0 1 N N N N N N -13.947 13.298 44.361 3.738  0.592  -1.508 O1  WN2 12 
WN2 O2  O2  O 0 1 N N N N N N -11.033 15.243 43.950 3.766  -0.790 1.721  O2  WN2 13 
WN2 O3  O3  O 0 1 N N N N N N -13.104 17.299 44.678 3.949  -3.186 -0.133 O3  WN2 14 
WN2 C12 C12 C 0 1 N N N N N N -15.999 14.856 42.042 -0.946 -1.887 0.489  C12 WN2 15 
WN2 C13 C13 C 0 1 Y N N N N N -17.329 14.154 42.289 -2.276 -1.214 0.273  C13 WN2 16 
WN2 O4  O4  O 0 1 N N N N N N -20.708 14.962 43.556 -5.795 -2.112 0.269  O4  WN2 17 
WN2 O5  O5  O 0 1 N N N N N N -18.994 10.901 41.927 -3.699 2.090  -0.419 O5  WN2 18 
WN2 C14 C14 C 0 1 Y N N N N N -18.414 14.868 42.812 -3.421 -1.958 0.362  C14 WN2 19 
WN2 C15 C15 C 0 1 Y N N N N N -19.649 14.259 43.027 -4.667 -1.364 0.182  C15 WN2 20 
WN2 C16 C16 C 0 1 Y N N N N N -19.807 12.917 42.751 -4.757 -0.005 -0.081 C16 WN2 21 
WN2 C17 C17 C 0 1 Y N N N N N -18.752 12.203 42.209 -3.606 0.760  -0.169 C17 WN2 22 
WN2 C18 C18 C 0 1 Y N N N N N -17.496 12.784 41.969 -2.349 0.153  -0.006 C18 WN2 23 
WN2 C19 C19 C 0 1 N N N N N N -16.468 11.860 41.404 -1.130 0.960  -0.165 C19 WN2 24 
WN2 O6  O6  O 0 1 N N N N N N -16.769 10.773 40.982 -0.086 0.444  -0.507 O6  WN2 25 
WN2 O7  O7  O 0 1 N N N N N N -15.192 12.273 41.422 -1.153 2.281  0.103  O7  WN2 26 
WN2 H1  H1  H 0 1 N N N N N N -15.323 11.459 38.850 0.655  5.119  -0.141 H1  WN2 27 
WN2 H3  H2  H 0 1 N N N N N N -14.221 12.869 39.006 -1.063 4.873  -0.535 H3  WN2 28 
WN2 H2  H3  H 0 1 N N N N N N -13.553 11.244 38.634 -0.496 4.667  1.139  H2  WN2 29 
WN2 H4  H4  H 0 1 N N N N N N -14.319 10.435 40.855 0.307  2.928  -1.237 H4  WN2 30 
WN2 H6  H5  H 0 1 N N N N N N -12.038 11.515 40.597 1.295  3.249  1.551  H6  WN2 31 
WN2 H5  H6  H 0 1 N N N N N N -12.771 13.039 41.202 1.018  1.569  1.042  H5  WN2 32 
WN2 H7  H7  H 0 1 N N N N N N -13.464 11.249 43.176 2.306  2.272  -1.131 H7  WN2 33 
WN2 H41 H8  H 0 1 N N N N N N -11.861 10.628 42.653 2.871  3.645  -0.154 H41 WN2 34 
WN2 H8  H9  H 0 1 N N N N N N -11.303 12.058 44.383 4.481  2.284  0.646  H8  WN2 35 
WN2 H51 H10 H 0 1 N N N N N N -11.086 13.102 42.938 3.199  1.431  1.535  H51 WN2 36 
WN2 H9  H11 H 0 1 N N N N N N -12.237 15.042 45.585 5.174  -1.025 0.232  H9  WN2 37 
WN2 H11 H12 H 0 1 N N N N N N -14.352 15.656 44.389 3.281  -1.730 -1.436 H11 WN2 38 
WN2 H13 H13 H 0 1 N N N N N N -12.508 16.768 42.237 1.913  -2.304 1.229  H13 WN2 39 
WN2 H14 H14 H 0 1 N N N N N N -13.375 15.203 42.074 1.461  -0.964 0.149  H14 WN2 40 
WN2 H15 H15 H 0 1 N N N N N N -14.589 17.963 42.397 1.510  -3.096 -1.602 H15 WN2 41 
WN2 H16 H16 H 0 1 N N N N N N -14.581 16.936 40.923 0.951  -3.878 -0.106 H16 WN2 42 
WN2 H17 H17 H 0 1 N N N N N N -16.035 16.372 43.545 -0.302 -1.499 -1.534 H17 WN2 43 
WN2 H18 H18 H 0 1 N N N N N N -16.770 16.846 41.976 -1.006 -3.109 -1.282 H18 WN2 44 
WN2 H10 H19 H 0 1 N N N N N N -10.762 16.125 44.178 4.240  -0.116 2.227  H10 WN2 45 
WN2 H12 H20 H 0 1 N N N N N N -13.766 17.924 44.406 4.857  -3.235 -0.461 H12 WN2 46 
WN2 H20 H21 H 0 1 N N N N N N -15.782 14.800 40.965 -1.088 -2.759 1.132  H20 WN2 47 
WN2 H19 H22 H 0 1 N N N N N N -15.222 14.314 42.601 -0.263 -1.195 0.979  H19 WN2 48 
WN2 H22 H23 H 0 1 N N N N N N -21.463 14.390 43.631 -6.167 -2.161 1.160  H22 WN2 49 
WN2 H24 H24 H 0 1 N N N N N N -18.232 10.521 41.505 -3.766 2.636  0.376  H24 WN2 50 
WN2 H21 H25 H 0 1 N N N N N N -18.291 15.913 43.054 -3.358 -3.014 0.578  H21 WN2 51 
WN2 H23 H26 H 0 1 N N N N N N -20.747 12.427 42.956 -5.724 0.456  -0.223 H23 WN2 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WN2 C1  C2  SING N N 1  
WN2 C2  C3  SING N N 2  
WN2 C2  O7  SING N N 3  
WN2 C3  C4  SING N N 4  
WN2 C4  C5  SING N N 5  
WN2 C5  C6  SING N N 6  
WN2 C6  O1  DOUB N N 7  
WN2 C6  C7  SING N N 8  
WN2 C7  O2  SING N N 9  
WN2 C7  C8  SING N N 10 
WN2 C8  O3  SING N N 11 
WN2 C8  C9  SING N N 12 
WN2 C9  C10 SING N N 13 
WN2 C10 C11 SING N N 14 
WN2 C11 C12 SING N N 15 
WN2 C12 C13 SING N N 16 
WN2 C13 C14 DOUB Y N 17 
WN2 C13 C18 SING Y N 18 
WN2 C14 C15 SING Y N 19 
WN2 C15 O4  SING N N 20 
WN2 C15 C16 DOUB Y N 21 
WN2 C16 C17 SING Y N 22 
WN2 C17 O5  SING N N 23 
WN2 C17 C18 DOUB Y N 24 
WN2 C18 C19 SING N N 25 
WN2 C19 O6  DOUB N N 26 
WN2 C19 O7  SING N N 27 
WN2 C1  H1  SING N N 28 
WN2 C1  H3  SING N N 29 
WN2 C1  H2  SING N N 30 
WN2 C2  H4  SING N N 31 
WN2 C3  H6  SING N N 32 
WN2 C3  H5  SING N N 33 
WN2 C4  H7  SING N N 34 
WN2 C4  H41 SING N N 35 
WN2 C5  H8  SING N N 36 
WN2 C5  H51 SING N N 37 
WN2 C7  H9  SING N N 38 
WN2 C8  H11 SING N N 39 
WN2 C9  H13 SING N N 40 
WN2 C9  H14 SING N N 41 
WN2 C10 H15 SING N N 42 
WN2 C10 H16 SING N N 43 
WN2 C11 H17 SING N N 44 
WN2 C11 H18 SING N N 45 
WN2 O2  H10 SING N N 46 
WN2 O3  H12 SING N N 47 
WN2 C12 H20 SING N N 48 
WN2 C12 H19 SING N N 49 
WN2 O4  H22 SING N N 50 
WN2 O5  H24 SING N N 51 
WN2 C14 H21 SING N N 52 
WN2 C16 H23 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WN2 InChI            InChI                1.06  "InChI=1S/C19H26O7/c1-11-5-4-8-15(22)18(24)14(21)7-3-2-6-12-9-13(20)10-16(23)17(12)19(25)26-11/h9-11,14,18,20-21,23-24H,2-8H2,1H3/t11-,14?,18?/m0/s1" 
WN2 InChIKey         InChI                1.06  VYVPBIRFUYSEOP-JCDGYTILSA-N                                                                                                                           
WN2 SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CCCC(=O)[C@@H](O)[C@@H](O)CCCCc2cc(O)cc(O)c2C(=O)O1"                                                                                          
WN2 SMILES           CACTVS               3.385 "C[CH]1CCCC(=O)[CH](O)[CH](O)CCCCc2cc(O)cc(O)c2C(=O)O1"                                                                                               
WN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCC(=O)[C@H]([C@H](CCCCc2cc(cc(c2C(=O)O1)O)O)O)O"                                                                                            
WN2 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CCCC(=O)C(C(CCCCc2cc(cc(c2C(=O)O1)O)O)O)O"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           WN2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4~{S},9~{S},10~{S})-4-methyl-9,10,17,19-tetrakis(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WN2 "Create component" 2023-10-09 PDBE 
WN2 "Modify PCM"       2024-09-27 PDBE 
WN2 "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WN2 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
