data_WZ2
#

_chem_comp.id                                   WZ2
_chem_comp.name                                 "methyl alpha-D-mannopyranosyl-(1->3)-[alpha-D-mannopyranosyl-(1->6)]-3-thio-alpha-D-mannopyranoside"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C19 H34 O15 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Methyl(alpha-D-mannopyranosyl)-(1->3)-S-[(alpha-D-mannopyranosyl)-(1->6)]-alpha-D-mannopyranoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-01-09
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       534.529
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WZ2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3BVU
_chem_comp.pdbx_subcomponent_list               "Z4R MAN MAN"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
WZ2  O42   O42   O  0  1  N  N  N  30.812  67.784  12.704  -0.231  -2.235   1.693  O4   Z4R   1  1  polymer  1  
WZ2  C42   C42   C  0  1  N  N  R  29.482  67.235  12.754  -0.157  -1.358   0.568  C4   Z4R   2  1  polymer  1  
WZ2  C52   C52   C  0  1  N  N  R  28.693  67.672  11.514   1.034  -0.411   0.736  C5   Z4R   3  1  polymer  1  
WZ2  C62   C62   C  0  1  N  N  N  28.952  66.739  10.350   2.331  -1.222   0.769  C6   Z4R   4  1  polymer  1  
WZ2  O11   O11   O  0  1  N  N  N  30.367  66.782  10.065   3.431  -0.352   1.040  O6   Z4R   5  1  polymer  1  
WZ2  O02   O02   O  0  1  N  N  N  27.292  67.522  11.762   1.072   0.504  -0.362  O5   Z4R   6  1  polymer  1  
WZ2  C12   C12   C  0  1  N  N  S  26.770  68.164  12.938  -0.086   1.334  -0.470  C1   Z4R   7  1  polymer  1  
WZ2  O12   O12   O  0  1  N  N  N  27.078  69.567  12.926  -0.243   2.091   0.731  O1   Z4R   8  1  polymer  1  
WZ2  C22   C22   C  0  1  N  N  N  26.215  70.145  11.885   0.747   3.106   0.912  C1M  Z4R   9  1  polymer  1  
WZ2  C01   C01   C  0  1  N  N  R  27.372  67.492  14.150  -1.322   0.457  -0.687  C2   Z4R  10  1  polymer  1  
WZ2  O22   O22   O  0  1  N  N  N  27.034  66.081  14.104  -1.189  -0.262  -1.915  O2   Z4R  11  1  polymer  1  
WZ2  C32   C32   C  0  1  N  N  S  28.892  67.675  14.082  -1.445  -0.534   0.475  C3   Z4R  12  1  polymer  1  
WZ2  S13   S13   S  0  1  N  N  N  29.757  66.715  15.404  -2.853  -1.640   0.183  S3   Z4R  13  1  polymer  1  
WZ2  C13   C13   C  0  1  N  N  R  29.853  67.927  16.717  -4.275  -0.515   0.243  C1   MAN  14  2  polymer  1  
WZ2  C23   C23   C  0  1  N  N  S  31.016  67.565  17.604  -5.570  -1.331   0.260  C2   MAN  15  2  polymer  1  
WZ2  C33   C33   C  0  1  N  N  S  30.804  66.203  18.239  -6.767  -0.374   0.250  C3   MAN  16  2  polymer  1  
WZ2  C43   C43   C  0  1  N  N  S  29.508  66.280  19.045  -6.668   0.536  -0.978  C4   MAN  17  2  polymer  1  
WZ2  C53   C53   C  0  1  N  N  R  28.315  66.730  18.165  -5.331   1.280  -0.946  C5   MAN  18  2  polymer  1  
WZ2  C63   C63   C  0  1  N  N  N  27.041  66.875  18.965  -5.270   2.169   0.297  C6   MAN  19  2  polymer  1  
WZ2  O23   O23   O  0  1  N  N  N  31.273  68.570  18.582  -5.613  -2.136   1.439  O2   MAN  20  2  polymer  1  
WZ2  O33   O33   O  0  1  N  N  N  31.906  65.783  19.049  -6.753   0.421   1.437  O3   MAN  21  2  polymer  1  
WZ2  O43   O43   O  0  1  N  N  N  29.143  65.041  19.615  -6.748  -0.254  -2.166  O4   MAN  22  2  polymer  1  
WZ2  O03   O03   O  0  1  N  N  N  28.645  67.976  17.509  -4.261   0.332  -0.907  O5   MAN  23  2  polymer  1  
WZ2  O63   O63   O  0  1  N  N  N  27.064  67.716  19.976  -4.091   2.976   0.249  O6   MAN  24  2  polymer  1  
WZ2  C11   C11   C  0  1  N  N  S  30.738  65.632   9.303   4.696  -1.013   1.093  C1   MAN  25  3  polymer  1  
WZ2  C21   C21   C  0  1  N  N  S  32.208  65.689   8.935   5.756  -0.047   1.628  C2   MAN  26  3  polymer  1  
WZ2  C31   C31   C  0  1  N  N  S  32.529  66.575   7.719   5.890   1.137   0.665  C3   MAN  27  3  polymer  1  
WZ2  C41   C41   C  0  1  N  N  S  31.479  66.465   6.620   6.237   0.608  -0.730  C4   MAN  28  3  polymer  1  
WZ2  C51   C51   C  0  1  N  N  R  30.088  66.638   7.256   5.159  -0.384  -1.175  C5   MAN  29  3  polymer  1  
WZ2  C61   C61   C  0  1  N  N  N  28.956  66.523   6.205   5.530  -0.962  -2.542  C6   MAN  30  3  polymer  1  
WZ2  O21   O21   O  0  1  N  N  N  32.587  64.284   8.560   7.011  -0.723   1.731  O2   MAN  31  3  polymer  1  
WZ2  O31   O31   O  0  1  N  N  N  33.806  66.103   7.188   6.928   2.007   1.118  O3   MAN  32  3  polymer  1  
WZ2  O41   O41   O  0  1  N  N  N  31.642  67.570   5.695   6.293   1.697  -1.653  O4   MAN  33  3  polymer  1  
WZ2  O01   O01   O  0  1  N  N  N  29.918  65.494   8.155   5.065  -1.443  -0.220  O5   MAN  34  3  polymer  1  
WZ2  O61   O61   O  0  1  N  N  N  27.700  66.750   6.874   4.469  -1.799  -3.009  O6   MAN  35  3  polymer  1  
WZ2  HO42  HO42  H  0  0  N  N  N  31.071  67.905  11.798   0.555  -2.785   1.816  HO4  Z4R  36  1  polymer  1  
WZ2  H42   H42   H  0  1  N  N  N  29.458  66.136  12.718  -0.032  -1.942  -0.344  H4   Z4R  37  1  polymer  1  
WZ2  H52   H52   H  0  1  N  N  N  28.995  68.707  11.295   0.929   0.145   1.668  H5   Z4R  38  1  polymer  1  
WZ2  H62A  H62A  H  0  0  N  N  N  28.639  65.714  10.599   2.265  -1.980   1.550  H61  Z4R  39  1  polymer  1  
WZ2  H62   H62   H  0  1  N  N  N  28.378  67.064   9.469   2.480  -1.707  -0.196  H62  Z4R  40  1  polymer  1  
WZ2  H12   H12   H  0  1  N  N  N  25.675  68.068  12.965   0.031   2.012  -1.315  H1   Z4R  41  1  polymer  1  
WZ2  H22   H22   H  0  1  N  N  N  25.201  70.289  12.287   1.735   2.647   0.949  H51  Z4R  42  1  polymer  1  
WZ2  H22A  H22A  H  0  0  N  N  N  26.624  71.115  11.566   0.703   3.809   0.080  H52  Z4R  43  1  polymer  1  
WZ2  H22B  H22B  H  0  0  N  N  N  26.174  69.463  11.023   0.557   3.635   1.846  H53  Z4R  44  1  polymer  1  
WZ2  H01   H01   H  0  1  N  N  N  26.988  67.926  15.085  -2.212   1.085  -0.726  H2   Z4R  45  1  polymer  1  
WZ2  HO22  HO22  H  0  0  N  N  N  26.960  65.802  13.199  -1.102   0.304  -2.694  HO2  Z4R  46  1  polymer  1  
WZ2  H32   H32   H  0  1  N  N  N  29.049  68.755  14.216  -1.596   0.013   1.406  H3   Z4R  47  1  polymer  1  
WZ2  H13   H13   H  0  1  N  N  N  29.985  68.921  16.264  -4.218   0.095   1.145  H1   MAN  48  2  polymer  1  
WZ2  H23   H23   H  0  1  N  N  N  31.914  67.506  16.971  -5.608  -1.972  -0.621  H2   MAN  49  2  polymer  1  
WZ2  H33   H33   H  0  1  N  N  N  30.732  65.439  17.451  -7.692  -0.948   0.207  H3   MAN  50  2  polymer  1  
WZ2  H43   H43   H  0  1  N  N  N  29.715  67.012  19.839  -7.486   1.257  -0.963  H4   MAN  51  2  polymer  1  
WZ2  H53   H53   H  0  1  N  N  N  28.133  65.949  17.412  -5.236   1.897  -1.840  H5   MAN  52  2  polymer  1  
WZ2  H63   H63   H  0  1  N  N  N  26.263  67.226  18.271  -6.149   2.812   0.327  H61  MAN  53  2  polymer  1  
WZ2  H63A  H63A  H  0  0  N  N  N  26.866  65.886  19.414  -5.246   1.544   1.190  H62  MAN  54  2  polymer  1  
WZ2  HO23  HO23  H  0  0  N  N  N  31.330  68.169  19.441  -4.880  -2.764   1.514  HO2  MAN  55  2  polymer  1  
WZ2  HO33  HO33  H  0  0  N  N  N  32.681  65.690  18.507  -6.805  -0.092   2.255  HO3  MAN  56  2  polymer  1  
WZ2  HO43  HO43  H  0  0  N  N  N  29.061  64.388  18.929  -7.572  -0.753  -2.252  HO4  MAN  57  2  polymer  1  
WZ2  HO63  HO63  H  0  0  N  N  N  27.070  67.230  20.792  -3.988   3.566   1.008  HO6  MAN  58  2  polymer  1  
WZ2  H11   H11   H  0  1  N  N  N  30.581  64.739   9.925   4.627  -1.878   1.752  H1   MAN  59  3  polymer  1  
WZ2  H21   H21   H  0  1  N  N  N  32.753  66.114   9.790   5.455   0.315   2.611  H2   MAN  60  3  polymer  1  
WZ2  H31   H31   H  0  1  N  N  N  32.555  67.627   8.038   4.947   1.683   0.625  H3   MAN  61  3  polymer  1  
WZ2  H41   H41   H  0  1  N  N  N  31.584  65.495   6.111   7.204   0.105  -0.699  H4   MAN  62  3  polymer  1  
WZ2  H51   H51   H  0  1  N  N  N  30.030  67.623   7.743   4.200   0.129  -1.245  H5   MAN  63  3  polymer  1  
WZ2  H61   H61   H  0  1  N  N  N  29.101  67.274   5.414   5.688  -0.148  -3.250  H61  MAN  64  3  polymer  1  
WZ2  H61A  H61A  H  0  0  N  N  N  28.966  65.525   5.742   6.444  -1.549  -2.453  H62  MAN  65  3  polymer  1  
WZ2  HO21  HO21  H  0  0  N  N  N  32.667  64.218   7.616   6.998  -1.488   2.323  HO2  MAN  66  3  polymer  1  
WZ2  HO31  HO31  H  0  0  N  N  N  33.739  66.001   6.246   6.777   2.374   2.000  HO3  MAN  67  3  polymer  1  
WZ2  HO41  HO41  H  0  0  N  N  N  31.678  68.386   6.179   6.956   2.366  -1.433  HO4  MAN  68  3  polymer  1  
WZ2  HO61  HO61  H  0  0  N  N  N  27.845  66.800   7.812   4.636  -2.200  -3.872  HO6  MAN  69  3  polymer  1  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WZ2  C51  O01   SING  N  N   1  
WZ2  C51  C41   SING  N  N   2  
WZ2  C51  C61   SING  N  N   3  
WZ2  O01  C11   SING  N  N   4  
WZ2  C11  O11   SING  N  N   5  
WZ2  C11  C21   SING  N  N   6  
WZ2  O11  C62   SING  N  N   7  
WZ2  C21  O21   SING  N  N   8  
WZ2  C21  C31   SING  N  N   9  
WZ2  C31  O31   SING  N  N  10  
WZ2  C31  C41   SING  N  N  11  
WZ2  C41  O41   SING  N  N  12  
WZ2  C61  O61   SING  N  N  13  
WZ2  C52  O02   SING  N  N  14  
WZ2  C52  C42   SING  N  N  15  
WZ2  C52  C62   SING  N  N  16  
WZ2  O02  C12   SING  N  N  17  
WZ2  C12  O12   SING  N  N  18  
WZ2  C12  C01   SING  N  N  19  
WZ2  O12  C22   SING  N  N  20  
WZ2  C01  O22   SING  N  N  21  
WZ2  C01  C32   SING  N  N  22  
WZ2  C32  C42   SING  N  N  23  
WZ2  C32  S13   SING  N  N  24  
WZ2  C42  O42   SING  N  N  25  
WZ2  C53  O03   SING  N  N  26  
WZ2  C53  C43   SING  N  N  27  
WZ2  C53  C63   SING  N  N  28  
WZ2  O03  C13   SING  N  N  29  
WZ2  C13  S13   SING  N  N  30  
WZ2  C13  C23   SING  N  N  31  
WZ2  C23  O23   SING  N  N  32  
WZ2  C23  C33   SING  N  N  33  
WZ2  C33  O33   SING  N  N  34  
WZ2  C33  C43   SING  N  N  35  
WZ2  C43  O43   SING  N  N  36  
WZ2  C63  O63   SING  N  N  37  
WZ2  C51  H51   SING  N  N  38  
WZ2  C11  H11   SING  N  N  39  
WZ2  C21  H21   SING  N  N  40  
WZ2  O21  HO21  SING  N  N  41  
WZ2  C31  H31   SING  N  N  42  
WZ2  O31  HO31  SING  N  N  43  
WZ2  C41  H41   SING  N  N  44  
WZ2  O41  HO41  SING  N  N  45  
WZ2  C61  H61   SING  N  N  46  
WZ2  C61  H61A  SING  N  N  47  
WZ2  O61  HO61  SING  N  N  48  
WZ2  C52  H52   SING  N  N  49  
WZ2  C12  H12   SING  N  N  50  
WZ2  C22  H22   SING  N  N  51  
WZ2  C22  H22A  SING  N  N  52  
WZ2  C22  H22B  SING  N  N  53  
WZ2  C01  H01   SING  N  N  54  
WZ2  O22  HO22  SING  N  N  55  
WZ2  C32  H32   SING  N  N  56  
WZ2  C42  H42   SING  N  N  57  
WZ2  O42  HO42  SING  N  N  58  
WZ2  C62  H62   SING  N  N  59  
WZ2  C62  H62A  SING  N  N  60  
WZ2  C53  H53   SING  N  N  61  
WZ2  C13  H13   SING  N  N  62  
WZ2  C23  H23   SING  N  N  63  
WZ2  O23  HO23  SING  N  N  64  
WZ2  C33  H33   SING  N  N  65  
WZ2  O33  HO33  SING  N  N  66  
WZ2  C43  H43   SING  N  N  67  
WZ2  O43  HO43  SING  N  N  68  
WZ2  C63  H63   SING  N  N  69  
WZ2  C63  H63A  SING  N  N  70  
WZ2  O63  HO63  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WZ2  SMILES            ACDLabs               10.04  "S(C2C(O)C(OC)OC(COC1OC(CO)C(O)C(O)C1O)C2O)C3OC(C(O)C(O)C3O)CO"  
WZ2  SMILES_CANONICAL  CACTVS                3.341  "CO[C@H]1O[C@H](CO[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H](O)[C@H](S[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C@@H]1O"  
WZ2  SMILES            CACTVS                3.341  "CO[CH]1O[CH](CO[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](S[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH]1O"  
WZ2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)S[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O"  
WZ2  SMILES            "OpenEye OEToolkits"  1.5.0  "COC1C(C(C(C(O1)COC2C(C(C(C(O2)CO)O)O)O)O)SC3C(C(C(C(O3)CO)O)O)O)O"  
WZ2  InChI             InChI                 1.03   "InChI=1S/C19H34O15S/c1-30-17-15(29)16(35-19-14(28)12(26)9(23)6(3-21)34-19)10(24)7(33-17)4-31-18-13(27)11(25)8(22)5(2-20)32-18/h5-29H,2-4H2,1H3/t5-,6-,7-,8-,9-,10-,11+,12+,13+,14+,15+,16+,17+,18+,19-/m1/s1"  
WZ2  InChIKey          InChI                 1.03   MECMOIIFPKBROO-OINXDFOBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WZ2  "SYSTEMATIC NAME"  ACDLabs               10.04  "methyl alpha-D-mannopyranosyl-(1->3)-[alpha-D-mannopyranosyl-(1->6)]-3-thio-alpha-D-mannopyranoside"  
WZ2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,4S,5S,6R)-2-[[(2R,3R,4S,5R,6S)-3,5-dihydroxy-6-methoxy-4-[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WZ2  "Create component"    2008-01-09  RCSB  
WZ2  "Modify descriptor"   2011-06-04  RCSB  
WZ2  "Other modification"  2020-07-03  RCSB  
WZ2  "Obsolete component"  2020-07-17  RCSB  
##
