data_YC2
#

_chem_comp.id                                   YC2
_chem_comp.name                                 "N-{[(1S)-1-carboxy-5-{[(4-iodophenyl)carbonyl]amino}pentyl]carbamoyl}-L-glutamic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 I N3 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(S)-2-(3-((S)-1-carboxy-(4-iodobenzamido)pentyl)ureido)pentanedioic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-06-05
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       549.314
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YC2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3D7H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YC2  I24   I24   I  0  1  N  N  N  23.760  50.289  51.196  -9.045   0.297  -0.661  I24   YC2   1  
YC2  C23   C23   C  0  1  Y  N  N  23.569  50.000  49.067  -7.028   0.391  -0.102  C23   YC2   2  
YC2  C22   C22   C  0  1  Y  N  N  23.687  51.034  48.136  -6.592   1.402   0.736  C22   YC2   3  
YC2  C21   C21   C  0  1  Y  N  N  23.542  50.860  46.740  -5.265   1.469   1.108  C21   YC2   4  
YC2  C25   C25   C  0  1  Y  N  N  23.305  48.745  48.495  -6.139  -0.563  -0.568  C25   YC2   5  
YC2  C26   C26   C  0  1  Y  N  N  23.190  48.561  47.096  -4.810  -0.507  -0.203  C26   YC2   6  
YC2  C20   C20   C  0  1  Y  N  N  23.304  49.594  46.175  -4.363   0.513   0.638  C20   YC2   7  
YC2  C19   C19   C  0  1  N  N  N  23.103  49.384  44.677  -2.940   0.579   1.033  C19   YC2   8  
YC2  O27   O27   O  0  1  N  N  N  22.541  50.263  44.015  -2.553   1.466   1.768  O27   YC2   9  
YC2  N18   N18   N  0  1  N  N  N  23.417  48.267  44.028  -2.070  -0.345   0.577  N18   YC2  10  
YC2  C17   C17   C  0  1  N  N  N  23.219  47.936  42.619  -0.660  -0.280   0.968  C17   YC2  11  
YC2  C16   C16   C  0  1  N  N  N  23.271  46.408  42.510   0.103  -1.436   0.319  C16   YC2  12  
YC2  C15   C15   C  0  1  N  N  N  22.420  45.614  43.538   1.576  -1.368   0.727  C15   YC2  13  
YC2  C14   C14   C  0  1  N  N  N  20.906  45.704  43.282   2.339  -2.524   0.078  C14   YC2  14  
YC2  C13   C13   C  0  1  N  N  S  19.941  45.028  44.281   3.812  -2.456   0.486  C13   YC2  15  
YC2  C28   C28   C  0  1  N  N  N  20.165  45.641  45.633   4.539  -3.661  -0.052  C28   YC2  16  
YC2  O30   O30   O  0  1  N  N  N  20.779  44.961  46.476   4.157  -4.895   0.315  O30   YC2  17  
YC2  O29   O29   O  0  1  N  N  N  19.687  46.798  45.888   5.465  -3.517  -0.814  O29   YC2  18  
YC2  N12   N12   N  0  1  N  N  N  18.630  45.444  43.764   4.415  -1.238  -0.060  N12   YC2  19  
YC2  C11   C11   C  0  1  N  N  N  17.931  44.709  42.868   5.494  -0.693   0.537  C11   YC2  20  
YC2  O31   O31   O  0  1  N  N  N  18.322  43.634  42.364   5.966  -1.213   1.529  O31   YC2  21  
YC2  N10   N10   N  0  1  N  N  N  16.706  45.194  42.514   6.048   0.428   0.034  N10   YC2  22  
YC2  C6    C6    C  0  1  N  N  S  16.057  44.518  41.415   7.220   1.020   0.683  C6    YC2  23  
YC2  C7    C7    C  0  1  N  N  N  17.023  44.715  40.250   6.772   1.918   1.806  C7    YC2  24  
YC2  O9    O9    O  0  1  N  N  N  17.967  45.594  40.270   7.682   2.572   2.547  O9    YC2  25  
YC2  O8    O8    O  0  1  N  N  N  16.960  43.935  39.255   5.595   2.051   2.041  O8    YC2  26  
YC2  C5    C5    C  0  1  N  N  N  14.759  45.298  41.066   8.011   1.837  -0.340  C5    YC2  27  
YC2  C4    C4    C  0  1  N  N  N  15.005  46.805  40.898   8.572   0.905  -1.415  C4    YC2  28  
YC2  C2    C2    C  0  1  N  N  N  13.879  47.582  40.199   9.351   1.710  -2.423  C2    YC2  29  
YC2  O1    O1    O  0  1  N  N  N  13.127  46.988  39.381   9.447   2.908  -2.295  O1    YC2  30  
YC2  O3    O3    O  0  1  N  N  N  13.805  48.803  40.436   9.937   1.097  -3.464  O3    YC2  31  
YC2  H22   H22   H  0  1  N  N  N  23.902  52.026  48.504  -7.291   2.141   1.099  H22   YC2  32  
YC2  H21   H21   H  0  1  N  N  N  23.616  51.721  46.092  -4.926   2.258   1.762  H21   YC2  33  
YC2  H25   H25   H  0  1  N  N  N  23.186  47.891  49.145  -6.487  -1.352  -1.218  H25   YC2  34  
YC2  H26   H26   H  0  1  N  N  N  23.004  47.564  46.725  -4.118  -1.252  -0.567  H26   YC2  35  
YC2  HN18  HN18  H  0  0  N  N  N  23.849  47.554  44.581  -2.379  -1.053  -0.010  HN18  YC2  36  
YC2  H17   H17   H  0  1  N  N  N  22.245  48.312  42.271  -0.235   0.668   0.638  H17   YC2  37  
YC2  H17A  H17A  H  0  0  N  N  N  23.995  48.401  41.993  -0.580  -0.356   2.053  H17A  YC2  38  
YC2  H16   H16   H  0  1  N  N  N  22.905  46.140  41.508  -0.322  -2.383   0.649  H16   YC2  39  
YC2  H16A  H16A  H  0  0  N  N  N  24.316  46.131  42.713   0.023  -1.360  -0.766  H16A  YC2  40  
YC2  H15   H15   H  0  1  N  N  N  22.715  44.556  43.482   2.001  -0.420   0.397  H15   YC2  41  
YC2  H15A  H15A  H  0  0  N  N  N  22.610  46.055  44.528   1.656  -1.444   1.812  H15A  YC2  42  
YC2  H14   H14   H  0  1  N  N  N  20.653  46.775  43.280   1.914  -3.471   0.408  H14   YC2  43  
YC2  H14A  H14A  H  0  0  N  N  N  20.756  45.152  42.343   2.259  -2.448  -1.007  H14A  YC2  44  
YC2  H13   H13   H  0  1  N  N  N  20.055  43.938  44.376   3.887  -2.442   1.574  H13   YC2  45  
YC2  HO30  HO30  H  0  0  N  N  N  20.822  45.437  47.297   4.654  -5.637  -0.057  HO30  YC2  46  
YC2  HN12  HN12  H  0  0  N  N  N  18.238  46.305  44.087   4.038  -0.823  -0.852  HN12  YC2  47  
YC2  HN10  HN10  H  0  0  N  N  N  16.284  45.968  42.986   5.671   0.842  -0.758  HN10  YC2  48  
YC2  H6    H6    H  0  1  N  N  N  15.820  43.466  41.632   7.854   0.227   1.082  H6    YC2  49  
YC2  HO9   HO9   H  0  1  N  N  N  18.496  45.509  39.486   7.346   3.137   3.256  HO9   YC2  50  
YC2  H5    H5    H  0  1  N  N  N  14.359  44.903  40.121   7.354   2.573  -0.804  H5    YC2  51  
YC2  H5A   H5A   H  0  1  N  N  N  14.053  45.164  41.898   8.833   2.350   0.161  H5A   YC2  52  
YC2  H4    H4    H  0  1  N  N  N  15.130  47.235  41.903   9.229   0.169  -0.952  H4    YC2  53  
YC2  H4A   H4A   H  0  1  N  N  N  15.891  46.901  40.253   7.750   0.393  -1.916  H4A   YC2  54  
YC2  HO3   HO3   H  0  1  N  N  N  13.111  49.186  39.912  10.425   1.656  -4.084  HO3   YC2  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YC2  C23  I24   SING  N  N   1  
YC2  C22  C23   DOUB  Y  N   2  
YC2  C25  C23   SING  Y  N   3  
YC2  C21  C22   SING  Y  N   4  
YC2  C22  H22   SING  N  N   5  
YC2  C20  C21   DOUB  Y  N   6  
YC2  C21  H21   SING  N  N   7  
YC2  C26  C25   DOUB  Y  N   8  
YC2  C25  H25   SING  N  N   9  
YC2  C20  C26   SING  Y  N  10  
YC2  C26  H26   SING  N  N  11  
YC2  C19  C20   SING  N  N  12  
YC2  O27  C19   DOUB  N  N  13  
YC2  N18  C19   SING  N  N  14  
YC2  C17  N18   SING  N  N  15  
YC2  N18  HN18  SING  N  N  16  
YC2  C16  C17   SING  N  N  17  
YC2  C17  H17   SING  N  N  18  
YC2  C17  H17A  SING  N  N  19  
YC2  C16  C15   SING  N  N  20  
YC2  C16  H16   SING  N  N  21  
YC2  C16  H16A  SING  N  N  22  
YC2  C14  C15   SING  N  N  23  
YC2  C15  H15   SING  N  N  24  
YC2  C15  H15A  SING  N  N  25  
YC2  C14  C13   SING  N  N  26  
YC2  C14  H14   SING  N  N  27  
YC2  C14  H14A  SING  N  N  28  
YC2  N12  C13   SING  N  N  29  
YC2  C13  C28   SING  N  N  30  
YC2  C13  H13   SING  N  N  31  
YC2  C28  O29   DOUB  N  N  32  
YC2  C28  O30   SING  N  N  33  
YC2  O30  HO30  SING  N  N  34  
YC2  C11  N12   SING  N  N  35  
YC2  N12  HN12  SING  N  N  36  
YC2  O31  C11   DOUB  N  N  37  
YC2  N10  C11   SING  N  N  38  
YC2  C6   N10   SING  N  N  39  
YC2  N10  HN10  SING  N  N  40  
YC2  C7   C6    SING  N  N  41  
YC2  C5   C6    SING  N  N  42  
YC2  C6   H6    SING  N  N  43  
YC2  O8   C7    DOUB  N  N  44  
YC2  C7   O9    SING  N  N  45  
YC2  O9   HO9   SING  N  N  46  
YC2  C4   C5    SING  N  N  47  
YC2  C5   H5    SING  N  N  48  
YC2  C5   H5A   SING  N  N  49  
YC2  C2   C4    SING  N  N  50  
YC2  C4   H4    SING  N  N  51  
YC2  C4   H4A   SING  N  N  52  
YC2  O1   C2    DOUB  N  N  53  
YC2  C2   O3    SING  N  N  54  
YC2  O3   HO3   SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YC2  SMILES            ACDLabs               10.04  "O=C(c1ccc(I)cc1)NCCCCC(C(=O)O)NC(=O)NC(C(=O)O)CCC(=O)O"  
YC2  SMILES_CANONICAL  CACTVS                3.341  "OC(=O)CC[C@H](NC(=O)N[C@@H](CCCCNC(=O)c1ccc(I)cc1)C(O)=O)C(O)=O"  
YC2  SMILES            CACTVS                3.341  "OC(=O)CC[CH](NC(=O)N[CH](CCCCNC(=O)c1ccc(I)cc1)C(O)=O)C(O)=O"  
YC2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(ccc1C(=O)NCCCC[C@@H](C(=O)O)NC(=O)N[C@@H](CCC(=O)O)C(=O)O)I"  
YC2  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(ccc1C(=O)NCCCCC(C(=O)O)NC(=O)NC(CCC(=O)O)C(=O)O)I"  
YC2  InChI             InChI                 1.03   "InChI=1S/C19H24IN3O8/c20-12-6-4-11(5-7-12)16(26)21-10-2-1-3-13(17(27)28)22-19(31)23-14(18(29)30)8-9-15(24)25/h4-7,13-14H,1-3,8-10H2,(H,21,26)(H,24,25)(H,27,28)(H,29,30)(H2,22,23,31)/t13-,14-/m0/s1"  
YC2  InChIKey          InChI                 1.03   ROXRILBFJQYPNZ-KBPBESRZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YC2  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-{[(1S)-1-carboxy-5-{[(4-iodophenyl)carbonyl]amino}pentyl]carbamoyl}-L-glutamic acid"  
YC2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[[(2S)-1-hydroxy-6-[(4-iodophenyl)carbonylamino]-1-oxo-hexan-2-yl]carbamoylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YC2  "Create component"      2008-06-05  RCSB  
YC2  "Modify aromatic_flag"  2011-06-04  RCSB  
YC2  "Modify descriptor"     2011-06-04  RCSB  
YC2  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YC2
_pdbx_chem_comp_synonyms.name        "(S)-2-(3-((S)-1-carboxy-(4-iodobenzamido)pentyl)ureido)pentanedioic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
