data_YN2
# 
_chem_comp.id                                    YN2 
_chem_comp.name                                  "4-{(1E)-3-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-oxoprop-1-en-1-yl}benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H24 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        440.497 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YN2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YN2 C01 C1  C 0 1 N N N N N N -11.926 9.244  48.973 0.051  -3.951 -0.374 C01 YN2 1  
YN2 C02 C2  C 0 1 N N N N N N -11.436 10.645 48.712 -1.335 -3.333 -0.387 C02 YN2 2  
YN2 N03 N1  N 0 1 N N N N N N -13.346 9.082  49.337 1.016  -2.983 0.096  N03 YN2 3  
YN2 C04 C3  C 0 1 N N N N N N -14.111 9.735  50.386 0.928  -2.418 1.436  C04 YN2 4  
YN2 C05 C4  C 0 1 N N N N N N -14.240 11.199 50.213 -0.159 -1.399 1.582  C05 YN2 5  
YN2 C06 C5  C 0 1 N N S N N N -11.611 11.637 49.873 -1.957 -3.158 0.960  C06 YN2 6  
YN2 C07 C6  C 0 1 N N R N N N -12.981 12.086 50.274 -1.549 -1.926 1.738  C07 YN2 7  
YN2 N09 N2  N 0 1 N N N N N N -11.395 12.276 52.103 -3.609 -1.496 0.555  N09 YN2 8  
YN2 C10 C7  C 0 1 N N N N N N -10.912 11.264 51.186 -3.492 -2.957 0.787  C10 YN2 9  
YN2 C13 C8  C 0 1 N N N N N N -10.729 12.818 53.272 -4.443 -0.874 -0.301 C13 YN2 10 
YN2 C16 C9  C 0 1 Y N N N N N -9.121  11.041 54.162 -4.804 1.182  -1.663 C16 YN2 11 
YN2 C17 C10 C 0 1 Y N N N N N -7.872  10.671 54.643 -4.745 2.534  -1.827 C17 YN2 12 
YN2 C18 C11 C 0 1 Y N N N N N -8.368  13.341 53.927 -3.886 1.382  0.568  C18 YN2 13 
YN2 C19 C12 C 0 1 Y N N N N N -7.108  12.965 54.426 -3.813 2.767  0.402  C19 YN2 14 
YN2 C20 C13 C 0 1 Y N N N N N -6.859  11.654 54.784 -4.253 3.342  -0.805 C20 YN2 15 
YN2 C24 C14 C 0 1 N N N N N N -14.033 8.079  48.469 2.016  -2.596 -0.720 C24 YN2 16 
YN2 C26 C15 C 0 1 N N N N N N -13.266 7.367  47.371 2.933  -1.533 -0.302 C26 YN2 17 
YN2 C27 C16 C 0 1 N N N N N N -13.467 6.023  47.143 3.998  -1.222 -1.068 C27 YN2 18 
YN2 C28 C17 C 0 1 Y N N N N N -12.697 5.308  46.080 4.919  -0.153 -0.648 C28 YN2 19 
YN2 C08 C18 C 0 1 N N N N N N -12.733 12.720 51.672 -2.623 -0.863 1.458  C08 YN2 20 
YN2 C14 C19 C 0 1 Y N N N N N -9.357  12.381 53.787 -4.375 0.592  -0.465 C14 YN2 21 
YN2 O15 O1  O 0 1 N N N N N N -11.317 13.678 53.920 -5.253 -1.520 -0.938 O15 YN2 22 
YN2 N21 N3  N 0 1 Y N N N N N -5.533  11.574 55.237 -4.072 4.696  -0.670 N21 YN2 23 
YN2 N22 N4  N 0 1 Y N N N N N -5.004  12.839 55.151 -3.531 4.905  0.607  N22 YN2 24 
YN2 N23 N5  N 0 1 Y N N N N N -5.963  13.714 54.645 -3.392 3.774  1.205  N23 YN2 25 
YN2 O25 O2  O 0 1 N N N N N N -15.224 7.786  48.624 2.158  -3.130 -1.804 O25 YN2 26 
YN2 C29 C20 C 0 1 Y N N N N N -11.844 5.997  45.211 6.025  0.170  -1.443 C29 YN2 27 
YN2 C30 C21 C 0 1 Y N N N N N -11.120 5.286  44.211 6.883  1.166  -1.051 C30 YN2 28 
YN2 C31 C22 C 0 1 Y N N N N N -11.276 3.936  44.115 6.652  1.858  0.141  C31 YN2 29 
YN2 C32 C23 C 0 1 Y N N N N N -12.150 3.237  45.001 5.549  1.536  0.936  C32 YN2 30 
YN2 C33 C24 C 0 1 Y N N N N N -12.852 3.931  45.977 4.687  0.544  0.543  C33 YN2 31 
YN2 C34 C25 C 0 1 N N N N N N -10.547 3.152  43.073 7.548  2.898  0.549  C34 YN2 32 
YN2 N35 N6  N 0 1 N N N N N N -9.983  2.587  42.276 8.259  3.723  0.873  N35 YN2 33 
YN2 H37 H1  H 0 1 N N N N N N -11.750 8.657  48.060 0.055  -4.817 0.288  H37 YN2 34 
YN2 H36 H2  H 0 1 N N N N N N -11.324 8.831  49.796 0.317  -4.267 -1.383 H36 YN2 35 
YN2 H38 H3  H 0 1 N N N N N N -10.364 10.589 48.473 -1.272 -2.356 -0.867 H38 YN2 36 
YN2 H39 H4  H 0 1 N N N N N N -11.985 11.039 47.844 -1.988 -3.966 -0.988 H39 YN2 37 
YN2 H41 H5  H 0 1 N N N N N N -15.120 9.298  50.401 0.747  -3.226 2.145  H41 YN2 38 
YN2 H40 H6  H 0 1 N N N N N N -13.613 9.543  51.348 1.881  -1.949 1.681  H40 YN2 39 
YN2 H43 H7  H 0 1 N N N N N N -14.701 11.365 49.228 0.068  -0.784 2.453  H43 YN2 40 
YN2 H42 H8  H 0 1 N N N N N N -14.920 11.555 51.001 -0.139 -0.755 0.703  H42 YN2 41 
YN2 H12 H9  H 0 1 N N N N N N -11.099 12.551 49.536 -1.778 -4.048 1.564  H12 YN2 42 
YN2 H11 H10 H 0 1 N N N N N N -13.208 12.940 49.618 -1.667 -2.178 2.792  H11 YN2 43 
YN2 H46 H11 H 0 1 N N N N N N -11.203 10.257 51.518 -3.859 -3.514 -0.075 H46 YN2 44 
YN2 H47 H12 H 0 1 N N N N N N -9.818  11.314 51.081 -4.024 -3.248 1.692  H47 YN2 45 
YN2 H48 H13 H 0 1 N N N N N N -9.908  10.307 54.075 -5.187 0.561  -2.459 H48 YN2 46 
YN2 H49 H14 H 0 1 N N N N N N -7.673  9.643  54.908 -5.082 2.979  -2.751 H49 YN2 47 
YN2 H50 H15 H 0 1 N N N N N N -8.563  14.368 53.656 -3.552 0.927  1.489  H50 YN2 48 
YN2 H52 H16 H 0 1 N N N N N N -12.560 7.916  46.766 2.756  -0.998 0.619  H52 YN2 49 
YN2 H53 H17 H 0 1 N N N N N N -14.188 5.481  47.738 4.176  -1.756 -1.989 H53 YN2 50 
YN2 H45 H18 H 0 1 N N N N N N -12.765 13.817 51.602 -3.105 -0.563 2.388  H45 YN2 51 
YN2 H44 H19 H 0 1 N N N N N N -13.496 12.376 52.386 -2.174 0.004  0.972  H44 YN2 52 
YN2 H51 H20 H 0 1 N N N N N N -5.063  10.753 55.561 -4.278 5.376  -1.330 H51 YN2 53 
YN2 H54 H21 H 0 1 N N N N N N -11.734 7.068  45.298 6.203  -0.365 -2.364 H54 YN2 54 
YN2 H55 H22 H 0 1 N N N N N N -10.457 5.810  43.539 7.736  1.415  -1.664 H55 YN2 55 
YN2 H56 H23 H 0 1 N N N N N N -12.265 2.167  44.912 5.372  2.070  1.857  H56 YN2 56 
YN2 H57 H24 H 0 1 N N N N N N -13.513 3.405  46.650 3.832  0.298  1.154  H57 YN2 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YN2 C01 C02 SING N N 1  
YN2 C01 N03 SING N N 2  
YN2 N03 C04 SING N N 3  
YN2 C04 C05 SING N N 4  
YN2 C02 C06 SING N N 5  
YN2 C05 C07 SING N N 6  
YN2 C06 C07 SING N N 7  
YN2 C07 C08 SING N N 8  
YN2 C08 N09 SING N N 9  
YN2 C06 C10 SING N N 10 
YN2 N09 C10 SING N N 11 
YN2 N09 C13 SING N N 12 
YN2 C13 C14 SING N N 13 
YN2 C13 O15 DOUB N N 14 
YN2 C14 C16 DOUB Y N 15 
YN2 C16 C17 SING Y N 16 
YN2 C14 C18 SING Y N 17 
YN2 C18 C19 DOUB Y N 18 
YN2 C17 C20 DOUB Y N 19 
YN2 C19 C20 SING Y N 20 
YN2 C20 N21 SING Y N 21 
YN2 N21 N22 SING Y N 22 
YN2 C19 N23 SING Y N 23 
YN2 N22 N23 DOUB Y N 24 
YN2 N03 C24 SING N N 25 
YN2 C24 O25 DOUB N N 26 
YN2 C24 C26 SING N N 27 
YN2 C26 C27 DOUB N E 28 
YN2 C27 C28 SING N N 29 
YN2 C28 C29 DOUB Y N 30 
YN2 C29 C30 SING Y N 31 
YN2 C30 C31 DOUB Y N 32 
YN2 C31 C32 SING Y N 33 
YN2 C28 C33 SING Y N 34 
YN2 C32 C33 DOUB Y N 35 
YN2 C31 C34 SING N N 36 
YN2 C34 N35 TRIP N N 37 
YN2 C01 H37 SING N N 38 
YN2 C01 H36 SING N N 39 
YN2 C02 H38 SING N N 40 
YN2 C02 H39 SING N N 41 
YN2 C04 H41 SING N N 42 
YN2 C04 H40 SING N N 43 
YN2 C05 H43 SING N N 44 
YN2 C05 H42 SING N N 45 
YN2 C06 H12 SING N N 46 
YN2 C07 H11 SING N N 47 
YN2 C10 H46 SING N N 48 
YN2 C10 H47 SING N N 49 
YN2 C16 H48 SING N N 50 
YN2 C17 H49 SING N N 51 
YN2 C18 H50 SING N N 52 
YN2 C26 H52 SING N N 53 
YN2 C27 H53 SING N N 54 
YN2 C08 H45 SING N N 55 
YN2 C08 H44 SING N N 56 
YN2 N21 H51 SING N N 57 
YN2 C29 H54 SING N N 58 
YN2 C30 H55 SING N N 59 
YN2 C32 H56 SING N N 60 
YN2 C33 H57 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YN2 SMILES           ACDLabs              12.01 "N#Cc1ccc(cc1)/C=C/C(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                           
YN2 InChI            InChI                1.06  "InChI=1S/C25H24N6O2/c26-14-18-3-1-17(2-4-18)5-8-24(32)30-11-9-20-15-31(16-21(20)10-12-30)25(33)19-6-7-22-23(13-19)28-29-27-22/h1-8,13,20-21H,9-12,15-16H2,(H,27,28,29)" 
YN2 InChIKey         InChI                1.06  FGNLTQZWSNNXOI-UHFFFAOYSA-N                                                                                                                                              
YN2 SMILES_CANONICAL CACTVS               3.385 "O=C(\C=C\c1ccc(cc1)C#N)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5[nH]nnc5c4"                                                                                                 
YN2 SMILES           CACTVS               3.385 "O=C(C=Cc1ccc(cc1)C#N)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4"                                                                                                       
YN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5c(c4)nn[nH]5)C#N"                                                                                               
YN2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CCC3CN(CC3CC2)C(=O)c4ccc5c(c4)nn[nH]5)C#N"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YN2 "SYSTEMATIC NAME" ACDLabs              12.01 "4-{(1E)-3-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-oxoprop-1-en-1-yl}benzonitrile"                                                       
YN2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(~{E})-3-[(3~{a}~{R},8~{a}~{S})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-3-oxidanylidene-prop-1-enyl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YN2 "Create component" 2023-06-19 RCSB 
YN2 "Initial release"  2024-12-18 RCSB 
# 
