data_YP2
# 
_chem_comp.id                                    YP2 
_chem_comp.name                                  "2-(2-hydroxy-2-oxoethyl)-1,3-bis(oxidanylidene)isoindole-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H7 N O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-08 
_chem_comp.pdbx_modified_date                    2024-07-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        249.176 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YP2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8RD1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YP2 C4  C1  C 0 1 Y N N N N N -49.277 6.781 -8.697  -1.757 0.840  0.163  C4  YP2 1  
YP2 C5  C2  C 0 1 N N N N N N -49.648 5.725 -12.176 1.193  -1.258 0.384  C5  YP2 2  
YP2 C6  C3  C 0 1 Y N N N N N -47.775 5.181 -10.428 -1.326 -1.914 -0.052 C6  YP2 3  
YP2 C13 C4  C 0 1 N N N N N N -47.530 6.591 -6.885  -4.197 0.512  -0.221 C13 YP2 4  
YP2 C1  C5  C 0 1 Y N N N N N -49.706 6.537 -10.003 -0.479 0.328  0.299  C1  YP2 5  
YP2 C11 C6  C 0 1 Y N N N N N -47.315 5.456 -9.147  -2.604 -1.399 -0.192 C11 YP2 6  
YP2 C12 C7  C 0 1 N N N N N N -51.709 6.823 -13.115 3.196  0.150  0.820  C12 YP2 7  
YP2 C14 C8  C 0 1 N N N N N N -53.027 6.040 -13.071 3.892  0.362  -0.500 C14 YP2 8  
YP2 C2  C9  C 0 1 Y N N N N N -48.970 5.744 -10.856 -0.261 -1.061 0.190  C2  YP2 9  
YP2 C3  C10 C 0 1 N N N N N N -50.882 7.052 -10.747 0.849  0.927  0.554  C3  YP2 10 
YP2 C9  C11 C 0 1 Y N N N N N -48.046 6.277 -8.279  -2.827 -0.027 -0.081 C9  YP2 11 
YP2 N7  N1  N 0 1 N N N N N N -50.792 6.507 -12.026 1.764  -0.058 0.589  N7  YP2 12 
YP2 O10 O1  O 0 1 N N N N N N -49.300 5.204 -13.213 1.773  -2.325 0.361  O10 YP2 13 
YP2 O15 O2  O 0 1 N N N N N N -46.476 6.046 -6.487  -4.392 1.707  -0.124 O15 YP2 14 
YP2 O16 O3  O 0 1 N N N N N N -48.208 7.375 -6.176  -5.228 -0.322 -0.456 O16 YP2 15 
YP2 O17 O4  O 0 1 N N N N N N -53.158 5.092 -12.248 5.217  0.574  -0.533 O17 YP2 16 
YP2 O18 O5  O 0 1 N N N N N N -53.903 6.371 -13.896 3.257  0.342  -1.528 O18 YP2 17 
YP2 O8  O6  O 0 1 N N N N N N -51.743 7.823 -10.381 1.075  2.110  0.706  O8  YP2 18 
YP2 H19 H1  H 0 1 N N N N N N -49.892 7.354 -8.018  -1.929 1.903  0.250  H19 YP2 19 
YP2 H20 H2  H 0 1 N N N N N N -47.209 4.536 -11.084 -1.158 -2.977 -0.140 H20 YP2 20 
YP2 H21 H3  H 0 1 N N N N N N -46.380 5.030 -8.815  -3.432 -2.064 -0.390 H21 YP2 21 
YP2 H23 H4  H 0 1 N N N N N N -51.205 6.598 -14.067 3.615  -0.726 1.315  H23 YP2 22 
YP2 H22 H5  H 0 1 N N N N N N -51.943 7.897 -13.069 3.339  1.027  1.451  H22 YP2 23 
YP2 H1  H6  H 0 1 N N N N N N -47.794 7.472 -5.326  -6.105 0.077  -0.540 H1  YP2 24 
YP2 H2  H7  H 0 1 N N N N N N -54.010 4.688 -12.362 5.619  0.705  -1.403 H2  YP2 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YP2 O18 C14 DOUB N N 1  
YP2 O10 C5  DOUB N N 2  
YP2 C12 C14 SING N N 3  
YP2 C12 N7  SING N N 4  
YP2 C14 O17 SING N N 5  
YP2 C5  N7  SING N N 6  
YP2 C5  C2  SING N N 7  
YP2 N7  C3  SING N N 8  
YP2 C2  C6  DOUB Y N 9  
YP2 C2  C1  SING Y N 10 
YP2 C3  O8  DOUB N N 11 
YP2 C3  C1  SING N N 12 
YP2 C6  C11 SING Y N 13 
YP2 C1  C4  DOUB Y N 14 
YP2 C11 C9  DOUB Y N 15 
YP2 C4  C9  SING Y N 16 
YP2 C9  C13 SING N N 17 
YP2 C13 O15 DOUB N N 18 
YP2 C13 O16 SING N N 19 
YP2 C4  H19 SING N N 20 
YP2 C6  H20 SING N N 21 
YP2 C11 H21 SING N N 22 
YP2 C12 H23 SING N N 23 
YP2 C12 H22 SING N N 24 
YP2 O16 H1  SING N N 25 
YP2 O17 H2  SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YP2 InChI            InChI                1.06  "InChI=1S/C11H7NO6/c13-8(14)4-12-9(15)6-2-1-5(11(17)18)3-7(6)10(12)16/h1-3H,4H2,(H,13,14)(H,17,18)" 
YP2 InChIKey         InChI                1.06  RPFFHROJAGNUIW-UHFFFAOYSA-N                                                                         
YP2 SMILES_CANONICAL CACTVS               3.385 "OC(=O)CN1C(=O)c2ccc(cc2C1=O)C(O)=O"                                                                
YP2 SMILES           CACTVS               3.385 "OC(=O)CN1C(=O)c2ccc(cc2C1=O)C(O)=O"                                                                
YP2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)O)C(=O)N(C2=O)CC(=O)O"                                                              
YP2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)O)C(=O)N(C2=O)CC(=O)O"                                                              
# 
_pdbx_chem_comp_identifier.comp_id           YP2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(2-hydroxy-2-oxoethyl)-1,3-bis(oxidanylidene)isoindole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YP2 "Create component" 2023-12-08 PDBE 
YP2 "Initial release"  2024-07-31 RCSB 
# 
