data_YR2
# 
_chem_comp.id                                    YR2 
_chem_comp.name                                  "(3R)-1'-[3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-6-yl]-3H-spiro[[1]benzofuran-2,4'-piperidin]-3-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2023-10-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        454.527 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YR2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8T6D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YR2 C02  C1  C 0 1 N N R 28.384 42.872 4.387 -4.726 -0.798 0.321  C02  YR2 1  
YR2 C03  C2  C 0 1 Y N N 29.585 42.996 3.547 -6.112 -0.548 0.888  C03  YR2 2  
YR2 C04  C3  C 0 1 Y N N 29.202 42.939 2.216 -6.760 0.315  0.013  C04  YR2 3  
YR2 C06  C4  C 0 1 N N N 27.246 42.565 3.463 -4.607 0.325  -0.728 C06  YR2 4  
YR2 C07  C5  C 0 1 N N N 26.090 43.395 3.167 -3.852 -0.176 -1.954 C07  YR2 5  
YR2 C08  C6  C 0 1 N N N 25.083 42.781 2.197 -2.402 -0.480 -1.567 C08  YR2 6  
YR2 C10  C7  C 0 1 Y N N 23.602 41.158 3.558 -0.422 0.534  -0.793 C10  YR2 7  
YR2 C11  C8  C 0 1 Y N N 22.399 41.859 3.466 0.356  1.577  -0.277 C11  YR2 8  
YR2 C14  C9  C 0 1 Y N N 22.809 40.076 5.442 1.426  -0.825 -0.856 C14  YR2 9  
YR2 C15  C10 C 0 1 Y N N 21.623 40.762 5.361 2.206  0.228  -0.337 C15  YR2 10 
YR2 C16  C11 C 0 1 Y N N 20.819 40.305 6.454 3.570  -0.292 -0.222 C16  YR2 11 
YR2 C18  C12 C 0 1 N N N 19.141 40.534 8.199 4.587  1.842  0.563  C18  YR2 12 
YR2 C19  C13 C 0 1 N N N 17.953 41.310 8.709 5.825  2.533  -0.022 C19  YR2 13 
YR2 C20  C14 C 0 1 N N N 16.818 41.552 7.731 7.072  1.984  0.671  C20  YR2 14 
YR2 C21  C15 C 0 1 Y N N 17.095 41.139 6.248 7.077  0.478  0.632  C21  YR2 15 
YR2 C22  C16 C 0 1 Y N N 18.380 40.750 5.836 5.908  -0.240 0.431  C22  YR2 16 
YR2 C23  C17 C 0 1 Y N N 18.582 40.389 4.486 5.954  -1.632 0.406  C23  YR2 17 
YR2 C24  C18 C 0 1 Y N N 17.488 40.441 3.608 7.179  -2.254 0.584  C24  YR2 18 
YR2 C25  C19 C 0 1 Y N N 16.226 40.847 4.099 8.304  -1.474 0.778  C25  YR2 19 
YR2 C29  C20 C 0 1 N N N 25.963 40.570 2.715 -2.457 1.178  0.202  C29  YR2 20 
YR2 C30  C21 C 0 1 N N N 26.911 41.181 3.742 -3.910 1.538  -0.124 C30  YR2 21 
YR2 C31  C22 C 0 1 Y N N 30.180 43.035 1.202 -8.059 0.721  0.309  C31  YR2 22 
YR2 C32  C23 C 0 1 Y N N 31.525 43.184 1.542 -8.687 0.265  1.449  C32  YR2 23 
YR2 C33  C24 C 0 1 Y N N 31.908 43.239 2.888 -8.033 -0.600 2.308  C33  YR2 24 
YR2 C34  C25 C 0 1 Y N N 30.945 43.145 3.889 -6.742 -1.005 2.024  C34  YR2 25 
YR2 N01  N1  N 0 1 N N N 28.123 44.142 5.099 -4.649 -2.120 -0.314 N01  YR2 26 
YR2 N09  N2  N 0 1 N N N 24.671 41.367 2.591 -1.778 0.732  -1.021 N09  YR2 27 
YR2 N12  N3  N 0 1 Y N N 21.435 41.650 4.366 1.642  1.402  -0.063 N12  YR2 28 
YR2 N13  N4  N 0 1 Y N N 23.790 40.287 4.531 0.127  -0.638 -1.070 N13  YR2 29 
YR2 N17  N5  N 0 1 N N N 19.479 40.724 6.825 4.683  0.409  0.250  N17  YR2 30 
YR2 N26  N6  N 0 1 Y N N 16.064 41.180 5.380 8.225  -0.160 0.796  N26  YR2 31 
YR2 N27  N7  N 0 1 Y N N 21.530 39.406 7.127 3.558  -1.530 -0.640 N27  YR2 32 
YR2 N28  N8  N 0 1 Y N N 22.745 39.250 6.524 2.266  -1.890 -1.035 N28  YR2 33 
YR2 O05  O1  O 0 1 N N N 27.732 42.782 2.133 -5.969 0.626  -1.052 O05  YR2 34 
YR2 H021 H1  H 0 0 N N N 28.509 42.052 5.110 -3.964 -0.693 1.093  H021 YR2 35 
YR2 H072 H2  H 0 0 N N N 26.451 44.339 2.732 -4.327 -1.084 -2.327 H072 YR2 36 
YR2 H071 H3  H 0 0 N N N 25.569 43.603 4.113 -3.870 0.589  -2.730 H071 YR2 37 
YR2 H081 H4  H 0 0 N N N 25.535 42.749 1.195 -2.384 -1.268 -0.814 H081 YR2 38 
YR2 H082 H5  H 0 0 N N N 24.185 43.416 2.174 -1.851 -0.807 -2.449 H082 YR2 39 
YR2 H111 H6  H 0 0 N N N 22.248 42.570 2.667 -0.102 2.529  -0.055 H111 YR2 40 
YR2 H182 H7  H 0 0 N N N 18.931 39.464 8.348 4.561  1.982  1.644  H182 YR2 41 
YR2 H181 H8  H 0 0 N N N 20.014 40.824 8.802 3.685  2.259  0.115  H181 YR2 42 
YR2 H191 H9  H 0 0 N N N 18.317 42.292 9.045 5.884  2.333  -1.092 H191 YR2 43 
YR2 H192 H10 H 0 0 N N N 17.540 40.759 9.567 5.756  3.608  0.145  H192 YR2 44 
YR2 H201 H11 H 0 0 N N N 16.585 42.627 7.744 7.961  2.360  0.164  H201 YR2 45 
YR2 H202 H12 H 0 0 N N N 15.944 40.984 8.082 7.083  2.315  1.709  H202 YR2 46 
YR2 H231 H13 H 0 0 N N N 19.556 40.080 4.137 5.056  -2.213 0.253  H231 YR2 47 
YR2 H241 H14 H 0 0 N N N 17.609 40.174 2.569 7.254  -3.331 0.572  H241 YR2 48 
YR2 H251 H15 H 0 0 N N N 15.381 40.888 3.427 9.264  -1.951 0.916  H251 YR2 49 
YR2 H291 H16 H 0 0 N N N 25.719 39.543 3.023 -1.947 2.054  0.602  H291 YR2 50 
YR2 H292 H17 H 0 0 N N N 26.464 40.550 1.736 -2.439 0.377  0.941  H292 YR2 51 
YR2 H301 H18 H 0 0 N N N 26.433 41.130 4.732 -3.929 2.362  -0.839 H301 YR2 52 
YR2 H302 H19 H 0 0 N N N 27.840 40.592 3.753 -4.424 1.837  0.789  H302 YR2 53 
YR2 H311 H20 H 0 0 N N N 29.887 42.993 0.163 -8.576 1.397  -0.356 H311 YR2 54 
YR2 H321 H21 H 0 0 N N N 32.272 43.257 0.766 -9.694 0.584  1.672  H321 YR2 55 
YR2 H331 H22 H 0 0 N N N 32.950 43.354 3.149 -8.530 -0.957 3.199  H331 YR2 56 
YR2 H341 H23 H 0 0 N N N 31.239 43.186 4.927 -6.227 -1.680 2.693  H341 YR2 57 
YR2 H012 H24 H 0 0 N N N 28.885 44.342 5.714 -4.777 -2.856 0.365  H012 YR2 58 
YR2 H011 H25 H 0 0 N N N 28.028 44.883 4.434 -5.318 -2.201 -1.065 H011 YR2 59 
YR2 H281 H27 H 0 0 N N N 23.470 38.631 6.827 2.006  -2.758 -1.382 H281 YR2 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YR2 C31 C32  DOUB Y N 1  
YR2 C31 C04  SING Y N 2  
YR2 C32 C33  SING Y N 3  
YR2 O05 C04  SING N N 4  
YR2 O05 C06  SING N N 5  
YR2 C08 N09  SING N N 6  
YR2 C08 C07  SING N N 7  
YR2 C04 C03  DOUB Y N 8  
YR2 N09 C29  SING N N 9  
YR2 N09 C10  SING N N 10 
YR2 C29 C30  SING N N 11 
YR2 C33 C34  DOUB Y N 12 
YR2 C07 C06  SING N N 13 
YR2 C06 C30  SING N N 14 
YR2 C06 C02  SING N N 15 
YR2 C11 C10  DOUB Y N 16 
YR2 C11 N12  SING Y N 17 
YR2 C03 C34  SING Y N 18 
YR2 C03 C02  SING N N 19 
YR2 C10 N13  SING Y N 20 
YR2 C24 C25  DOUB Y N 21 
YR2 C24 C23  SING Y N 22 
YR2 C25 N26  SING Y N 23 
YR2 N12 C15  DOUB Y N 24 
YR2 C02 N01  SING N N 25 
YR2 C23 C22  DOUB Y N 26 
YR2 N13 C14  DOUB Y N 27 
YR2 C15 C14  SING Y N 28 
YR2 C15 C16  SING Y N 29 
YR2 N26 C21  DOUB Y N 30 
YR2 C14 N28  SING Y N 31 
YR2 C22 C21  SING Y N 32 
YR2 C22 N17  SING N N 33 
YR2 C21 C20  SING N N 34 
YR2 C16 N17  SING N N 35 
YR2 C16 N27  DOUB Y N 36 
YR2 N28 N27  SING Y N 37 
YR2 N17 C18  SING N N 38 
YR2 C20 C19  SING N N 39 
YR2 C18 C19  SING N N 40 
YR2 C02 H021 SING N N 41 
YR2 C07 H072 SING N N 42 
YR2 C07 H071 SING N N 43 
YR2 C08 H081 SING N N 44 
YR2 C08 H082 SING N N 45 
YR2 C11 H111 SING N N 46 
YR2 C18 H182 SING N N 47 
YR2 C18 H181 SING N N 48 
YR2 C19 H191 SING N N 49 
YR2 C19 H192 SING N N 50 
YR2 C20 H201 SING N N 51 
YR2 C20 H202 SING N N 52 
YR2 C23 H231 SING N N 53 
YR2 C24 H241 SING N N 54 
YR2 C25 H251 SING N N 55 
YR2 C29 H291 SING N N 56 
YR2 C29 H292 SING N N 57 
YR2 C30 H301 SING N N 58 
YR2 C30 H302 SING N N 59 
YR2 C31 H311 SING N N 60 
YR2 C32 H321 SING N N 61 
YR2 C33 H331 SING N N 62 
YR2 C34 H341 SING N N 63 
YR2 N01 H012 SING N N 64 
YR2 N01 H011 SING N N 65 
YR2 N28 H281 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YR2 SMILES           ACDLabs              12.01 "NC1c2ccccc2OC21CCN(CC2)c1cnc2c(n[NH]c2n1)N1CCCc2ncccc21"                                                                                                                                                
YR2 InChI            InChI                1.06  "InChI=1S/C25H26N8O/c26-22-16-5-1-2-8-19(16)34-25(22)9-13-32(14-10-25)20-15-28-21-23(29-20)30-31-24(21)33-12-4-6-17-18(33)7-3-11-27-17/h1-3,5,7-8,11,15,22H,4,6,9-10,12-14,26H2,(H,29,30,31)/t22-/m1/s1" 
YR2 InChIKey         InChI                1.06  RGCGBFIARQENML-JOCHJYFZSA-N                                                                                                                                                                              
YR2 SMILES_CANONICAL CACTVS               3.385 "N[C@@H]1c2ccccc2OC13CCN(CC3)c4cnc5c([nH]nc5N6CCCc7ncccc67)n4"                                                                                                                                           
YR2 SMILES           CACTVS               3.385 "N[CH]1c2ccccc2OC13CCN(CC3)c4cnc5c([nH]nc5N6CCCc7ncccc67)n4"                                                                                                                                             
YR2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[C@H](C3(O2)CCN(CC3)c4cnc5c(n4)[nH]nc5N6CCCc7c6cccn7)N"                                                                                                                                      
YR2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(C3(O2)CCN(CC3)c4cnc5c(n4)[nH]nc5N6CCCc7c6cccn7)N"                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YR2 "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-1'-[3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-6-yl]-3H-spiro[[1]benzofuran-2,4'-piperidin]-3-amine"           
YR2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-1'-[3-(3,4-dihydro-2~{H}-1,5-naphthyridin-1-yl)-1~{H}-pyrazolo[3,4-b]pyrazin-6-yl]spiro[3~{H}-1-benzofuran-2,4'-piperidine]-3-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YR2 "Create component" 2023-06-20 RCSB 
YR2 "Initial release"  2023-10-11 RCSB 
# 
