data_ZI2
# 
_chem_comp.id                                    ZI2 
_chem_comp.name                                  "[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-4-amino-2,4-dideoxy-beta-D-glucopyranoside" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H24 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-10 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        320.339 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZI2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GFC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZI2 C1  C1  C 0 1 N N N -13.566 -28.421 -61.719 0.657  4.187  0.472  C1  ZI2 1  
ZI2 C2  C2  C 0 1 N N N -14.070 -29.391 -62.752 0.063  2.945  -0.140 C2  ZI2 2  
ZI2 O1  O1  O 0 1 N N N -13.937 -29.166 -63.946 0.518  2.501  -1.173 O1  ZI2 3  
ZI2 N1  N1  N 0 1 N N N -14.702 -30.497 -62.325 -0.974 2.327  0.459  N1  ZI2 4  
ZI2 C3  C3  C 0 1 N N R -15.189 -31.576 -63.169 -1.551 1.119  -0.137 C3  ZI2 5  
ZI2 C4  C4  C 0 1 N N S -16.704 -31.687 -62.995 -3.007 0.971  0.315  C4  ZI2 6  
ZI2 O2  O2  O 0 1 N N N -17.391 -30.466 -63.277 -3.772 2.077  -0.169 O2  ZI2 7  
ZI2 C5  C5  C 0 1 N N S -17.240 -32.815 -63.887 -3.576 -0.334 -0.250 C5  ZI2 8  
ZI2 N2  N2  N 0 1 N N N -18.704 -32.931 -63.841 -4.948 -0.523 0.237  N2  ZI2 9  
ZI2 C6  C6  C 0 1 N N S -16.576 -34.138 -63.499 -2.703 -1.504 0.211  C6  ZI2 10 
ZI2 C7  C7  C 0 1 N N N -16.978 -35.285 -64.381 -3.229 -2.805 -0.398 C7  ZI2 11 
ZI2 O3  O3  O 0 1 N N N -16.282 -36.450 -63.969 -2.487 -3.909 0.124  O3  ZI2 12 
ZI2 O4  O4  O 0 1 N N N -15.172 -33.992 -63.677 -1.356 -1.288 -0.215 O4  ZI2 13 
ZI2 C8  C8  C 0 1 N N R -14.545 -32.959 -62.919 -0.756 -0.107 0.321  C8  ZI2 14 
ZI2 O5  O5  O 0 1 N N N -13.201 -32.981 -63.332 0.591  -0.002 -0.145 O5  ZI2 15 
ZI2 C9  C9  C 0 1 N N N -12.307 -33.721 -62.473 1.450  -1.044 0.323  C9  ZI2 16 
ZI2 C10 C10 C 0 1 N N S -11.767 -32.741 -61.454 2.859  -0.832 -0.236 C10 ZI2 17 
ZI2 C11 C11 C 0 1 N N N -10.939 -31.621 -62.024 3.752  -2.009 0.169  C11 ZI2 18 
ZI2 O6  O6  O 0 1 N N N -10.470 -30.759 -60.992 5.092  -1.750 -0.261 O6  ZI2 19 
ZI2 C12 C12 C 0 1 N N N -9.698  -31.502 -60.045 5.640  -0.540 0.271  C12 ZI2 20 
ZI2 C13 C13 C 0 1 N N N -10.486 -32.648 -59.447 4.747  0.636  -0.134 C13 ZI2 21 
ZI2 O7  O7  O 0 1 N N N -11.080 -33.487 -60.443 3.407  0.378  0.296  O7  ZI2 22 
ZI2 H1  H1  H 0 1 N N N -13.102 -27.559 -62.220 0.120  4.432  1.389  H1  ZI2 23 
ZI2 H2  H2  H 0 1 N N N -14.407 -28.076 -61.099 1.708  4.012  0.702  H2  ZI2 24 
ZI2 H3  H3  H 0 1 N N N -12.821 -28.919 -61.081 0.571  5.015  -0.231 H3  ZI2 25 
ZI2 H4  H4  H 0 1 N N N -14.850 -30.586 -61.340 -1.338 2.682  1.285  H4  ZI2 26 
ZI2 H5  H5  H 0 1 N N N -14.996 -31.310 -64.219 -1.513 1.194  -1.223 H5  ZI2 27 
ZI2 H6  H6  H 0 1 N N N -16.898 -31.971 -61.950 -3.051 0.947  1.404  H6  ZI2 28 
ZI2 H7  H7  H 0 1 N N N -17.052 -29.775 -62.720 -4.706 2.048  0.081  H7  ZI2 29 
ZI2 H8  H8  H 0 1 N N N -16.944 -32.587 -64.922 -3.579 -0.288 -1.339 H8  ZI2 30 
ZI2 H9  H9  H 0 1 N N N -19.116 -32.057 -64.098 -5.343 -1.381 -0.118 H9  ZI2 31 
ZI2 H10 H10 H 0 1 N N N -19.002 -33.640 -64.480 -4.980 -0.501 1.246  H10 ZI2 32 
ZI2 H12 H12 H 0 1 N N N -16.816 -34.373 -62.452 -2.733 -1.573 1.299  H12 ZI2 33 
ZI2 H13 H13 H 0 1 N N N -16.724 -35.054 -65.426 -4.283 -2.923 -0.147 H13 ZI2 34 
ZI2 H14 H14 H 0 1 N N N -18.062 -35.453 -64.296 -3.115 -2.770 -1.482 H14 ZI2 35 
ZI2 H15 H15 H 0 1 N N N -16.531 -37.181 -64.523 -2.768 -4.768 -0.220 H15 ZI2 36 
ZI2 H16 H16 H 0 1 N N N -14.617 -33.185 -61.845 -0.761 -0.158 1.410  H16 ZI2 37 
ZI2 H17 H17 H 0 1 N N N -12.853 -34.531 -61.967 1.484  -1.025 1.412  H17 ZI2 38 
ZI2 H18 H18 H 0 1 N N N -11.482 -34.147 -63.063 1.068  -2.008 -0.012 H18 ZI2 39 
ZI2 H19 H19 H 0 1 N N N -12.642 -32.273 -60.979 2.813  -0.765 -1.323 H19 ZI2 40 
ZI2 H20 H20 H 0 1 N N N -10.076 -32.047 -62.557 3.732  -2.125 1.252  H20 ZI2 41 
ZI2 H21 H21 H 0 1 N N N -11.554 -31.040 -62.727 3.388  -2.921 -0.303 H21 ZI2 42 
ZI2 H22 H22 H 0 1 N N N -8.809  -31.908 -60.551 5.684  -0.607 1.358  H22 ZI2 43 
ZI2 H23 H23 H 0 1 N N N -9.383  -30.827 -59.236 6.643  -0.390 -0.127 H23 ZI2 44 
ZI2 H24 H24 H 0 1 N N N -11.284 -32.234 -58.814 5.111  1.549  0.338  H24 ZI2 45 
ZI2 H25 H25 H 0 1 N N N -9.809  -33.258 -58.831 4.767  0.753  -1.217 H25 ZI2 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZI2 C7  O3  SING N N 1  
ZI2 C7  C6  SING N N 2  
ZI2 O1  C2  DOUB N N 3  
ZI2 C5  N2  SING N N 4  
ZI2 C5  C6  SING N N 5  
ZI2 C5  C4  SING N N 6  
ZI2 O4  C6  SING N N 7  
ZI2 O4  C8  SING N N 8  
ZI2 O5  C8  SING N N 9  
ZI2 O5  C9  SING N N 10 
ZI2 O2  C4  SING N N 11 
ZI2 C3  C4  SING N N 12 
ZI2 C3  C8  SING N N 13 
ZI2 C3  N1  SING N N 14 
ZI2 C2  N1  SING N N 15 
ZI2 C2  C1  SING N N 16 
ZI2 C9  C10 SING N N 17 
ZI2 C11 C10 SING N N 18 
ZI2 C11 O6  SING N N 19 
ZI2 C10 O7  SING N N 20 
ZI2 O6  C12 SING N N 21 
ZI2 O7  C13 SING N N 22 
ZI2 C12 C13 SING N N 23 
ZI2 C1  H1  SING N N 24 
ZI2 C1  H2  SING N N 25 
ZI2 C1  H3  SING N N 26 
ZI2 N1  H4  SING N N 27 
ZI2 C3  H5  SING N N 28 
ZI2 C4  H6  SING N N 29 
ZI2 O2  H7  SING N N 30 
ZI2 C5  H8  SING N N 31 
ZI2 N2  H9  SING N N 32 
ZI2 N2  H10 SING N N 33 
ZI2 C6  H12 SING N N 34 
ZI2 C7  H13 SING N N 35 
ZI2 C7  H14 SING N N 36 
ZI2 O3  H15 SING N N 37 
ZI2 C8  H16 SING N N 38 
ZI2 C9  H17 SING N N 39 
ZI2 C9  H18 SING N N 40 
ZI2 C10 H19 SING N N 41 
ZI2 C11 H20 SING N N 42 
ZI2 C11 H21 SING N N 43 
ZI2 C12 H22 SING N N 44 
ZI2 C12 H23 SING N N 45 
ZI2 C13 H24 SING N N 46 
ZI2 C13 H25 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZI2 SMILES           ACDLabs              12.01 "CC(=O)NC1C(O)C(N)C(CO)OC1OCC1COCCO1"                                                                                                                 
ZI2 InChI            InChI                1.06  "InChI=1S/C13H24N2O7/c1-7(17)15-11-12(18)10(14)9(4-16)22-13(11)21-6-8-5-19-2-3-20-8/h8-13,16,18H,2-6,14H2,1H3,(H,15,17)/t8-,9+,10+,11+,12-,13+/m0/s1" 
ZI2 InChIKey         InChI                1.06  WHUIOPAZXMZGEJ-ZSIRSIGDSA-N                                                                                                                           
ZI2 SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](N)[C@@H](CO)O[C@H]1OC[C@@H]2COCCO2"                                                                                     
ZI2 SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)[CH](N)[CH](CO)O[CH]1OC[CH]2COCCO2"                                                                                               
ZI2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC[C@@H]2COCCO2)CO)N)O"                                                                                      
ZI2 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OCC2COCCO2)CO)N)O"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZI2 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-4-amino-2,4-dideoxy-beta-D-glucopyranoside"                                                   
ZI2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},3~{R},4~{S},5~{S},6~{S})-5-azanyl-2-[[(2~{S})-1,4-dioxan-2-yl]methoxy]-6-(hydroxymethyl)-4-oxidanyl-oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZI2 "Create component" 2023-03-10 RCSB 
ZI2 "Initial release"  2023-05-24 RCSB 
# 
