data_653
#

_chem_comp.id                                   653
_chem_comp.name                                 "5-(2-AMINOETHYL)-3-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-1,1'-BIPHENYL-2-OLATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H22 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_23653
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       372.443
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    653
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O38
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
653  C1      C1      C   0  1  Y  N  N  44.022  -3.031  26.234   5.337   0.361   0.073  C1      653   1  
653  C2      C2      C   0  1  Y  N  N  44.333  -1.625  26.242   5.072   1.547  -0.623  C2      653   2  
653  C3      C3      C   0  1  Y  N  N  44.231  -0.821  27.373   3.794   1.872  -0.976  C3      653   3  
653  C4      C4      C   0  1  Y  N  N  43.817  -1.434  28.514   2.742   1.026  -0.647  C4      653   4  
653  C5      C5      C   0  1  Y  N  N  43.517  -2.750  28.575   2.990  -0.171   0.052  C5      653   5  
653  C6      C6      C   0  1  Y  N  N  43.591  -3.604  27.467   4.298  -0.502   0.406  C6      653   6  
653  C7      C7      C   0  1  N  N  N  44.153  -3.791  25.043   6.726   0.022   0.450  C7      653   7  
653  N1      N1      N   0  1  N  N  N  43.929  -5.095  25.062   6.980  -1.106   1.111  N1      653   8  
653  N2      N2      N   1  1  N  N  N  44.495  -3.164  23.927   7.723   0.845   0.127  N2      653   9  
653  N3      N3      N   0  1  Y  N  N  43.652  -0.951  29.699   1.380   1.073  -0.857  N3      653  10  
653  N4      N4      N   0  1  Y  N  N  43.150  -3.116  29.790   1.794  -0.785   0.232  N4      653  11  
653  C8      C8      C   0  1  Y  N  N  43.256  -1.952  30.426   0.843  -0.058  -0.301  C8      653  12  
653  "C1'"   "C1'"   C   0  1  Y  N  N  43.009  -1.840  31.818  -0.594  -0.405  -0.301  "C1'"   653  13  
653  "C2'"   "C2'"   C   0  1  Y  N  N  42.656  -2.971  32.593  -0.995  -1.726  -0.510  "C2'"   653  14  
653  "C3'"   "C3'"   C   0  1  Y  N  N  42.406  -2.887  33.964  -2.336  -2.051  -0.510  "C3'"   653  15  
653  "CV'"   "C31'"  C   0  1  N  N  N  42.043  -4.149  34.816  -2.760  -3.479  -0.737  "CV'"   653  16  
653  "CW'"   "C32'"  C   0  1  N  N  N  40.537  -4.558  34.655  -2.845  -4.205   0.607  "CW'"   653  17  
653  "NX'"   "N33'"  N   1  1  N  N  N  40.338  -5.959  35.203  -3.259  -5.597   0.386  "NX'"   653  18  
653  "C4'"   "C4'"   C   0  1  Y  N  N  42.506  -1.643  34.575  -3.293  -1.075  -0.303  "C4'"   653  19  
653  "C5'"   "C5'"   C   0  1  Y  N  N  42.849  -0.484  33.872  -2.911   0.248  -0.092  "C5'"   653  20  
653  "C6'"   "C6'"   C   0  1  Y  N  N  43.094  -0.605  32.498  -1.556   0.588  -0.086  "C6'"   653  21  
653  "O6'"   "O6'"   O  -1  1  N  N  N  43.433   0.529  31.809  -1.175   1.874   0.119  "O6'"   653  22  
653  C1B     "C1''"  C   0  1  Y  N  N  42.928   0.728  34.573  -3.940   1.293   0.130  C1B     653  23  
653  C2B     "C2''"  C   0  1  Y  N  N  44.121   1.467  34.685  -3.831   2.164   1.212  C2B     653  24  
653  C3B     "C3''"  C   0  1  Y  N  N  44.173   2.663  35.421  -4.791   3.134   1.414  C3B     653  25  
653  C4B     "C4''"  C   0  1  Y  N  N  43.042   3.158  36.062  -5.862   3.242   0.544  C4B     653  26  
653  C5B     "C5''"  C   0  1  Y  N  N  41.845   2.445  35.966  -5.976   2.380  -0.531  C5B     653  27  
653  C6B     "C6''"  C   0  1  Y  N  N  41.792   1.251  35.228  -5.018   1.410  -0.747  C6B     653  28  
653  HC2     HC2     H   0  1  N  N  N  44.676  -1.150  25.346   5.885   2.210  -0.881  HC2     653  29  
653  HC3     HC3     H   0  1  N  N  N  44.461   0.230  27.361   3.600   2.789  -1.512  HC3     653  30  
653  HC6     HC6     H   0  1  N  N  N  43.334  -4.653  27.553   4.503  -1.420   0.937  HC6     653  31  
653  HH11    HH11    H   0  0  N  N  N  43.688  -5.517  25.952   7.891  -1.328   1.359  HH11    653  32  
653  HH12    HH12    H   0  0  N  N  N  43.979  -5.719  24.287   6.254  -1.704   1.346  HH12    653  33  
653  HH21    HH21    H   0  0  N  N  N  44.641  -2.164  23.931   7.538   1.666  -0.355  HH21    653  34  
653  HH22    HH22    H   0  0  N  N  N  44.650  -3.632  23.060   8.634   0.624   0.378  HH22    653  35  
653  HN3     HN3     H   0  1  N  N  N  43.757  -0.029  30.023   0.892   1.776  -1.314  HN3     653  36  
653  "HC2'"  "HC2'"  H   0  0  N  N  N  42.574  -3.936  32.111  -0.254  -2.495  -0.672  "HC2'"  653  37  
653  H31A    H31A    H   0  0  N  N  N  42.276  -3.950  35.863  -3.737  -3.495  -1.221  H31A    653  38  
653  H31B    H31B    H   0  0  N  N  N  42.697  -4.958  34.521  -2.030  -3.978  -1.374  H31B    653  39  
653  H32A    H32A    H   0  0  N  N  N  40.227  -4.506  33.620  -1.869  -4.189   1.091  H32A    653  40  
653  H32B    H32B    H   0  0  N  N  N  39.912  -3.859  35.199  -3.575  -3.706   1.245  H32B    653  41  
653  H33A    H33A    H   0  0  N  N  N  40.281  -6.682  34.451  -4.163  -5.613  -0.062  H33A    653  42  
653  H33B    H33B    H   0  0  N  N  N  39.473  -6.037  35.783  -2.583  -6.059  -0.204  H33B    653  43  
653  H33C    H33C    H   0  0  N  N  N  41.148  -6.192  35.806  -3.315  -6.076   1.272  H33C    653  44  
653  "HC4'"  "HC4'"  H   0  0  N  N  N  42.312  -1.567  35.637  -4.340  -1.339  -0.305  "HC4'"  653  45  
653  H2B     "H2''"  H   0  1  N  N  N  45.017   1.109  34.195  -2.996   2.080   1.892  H2B     653  46  
653  H3B     "H3''"  H   0  1  N  N  N  45.101   3.214  35.499  -4.708   3.810   2.252  H3B     653  47  
653  H4B     "H4''"  H   0  1  N  N  N  43.088   4.080  36.632  -6.611   4.003   0.706  H4B     653  48  
653  H5B     "H5''"  H   0  1  N  N  N  40.955   2.814  36.458  -6.814   2.469  -1.207  H5B     653  49  
653  H6B     "H6''"  H   0  1  N  N  N  40.852   0.718  35.170  -5.107   0.738  -1.587  H6B     653  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
653  C1     C2      DOUB  Y  N   1  
653  C1     C6      SING  Y  N   2  
653  C1     C7      SING  N  N   3  
653  C2     C3      SING  Y  N   4  
653  C2     HC2     SING  N  N   5  
653  C3     C4      DOUB  Y  N   6  
653  C3     HC3     SING  N  N   7  
653  C4     C5      SING  Y  N   8  
653  C4     N3      SING  Y  N   9  
653  C5     C6      DOUB  Y  N  10  
653  C5     N4      SING  Y  N  11  
653  C6     HC6     SING  N  N  12  
653  C7     N1      SING  N  N  13  
653  C7     N2      DOUB  N  N  14  
653  N1     HH11    SING  N  N  15  
653  N1     HH12    SING  N  N  16  
653  N2     HH21    SING  N  N  17  
653  N2     HH22    SING  N  N  18  
653  N3     C8      SING  Y  N  19  
653  N3     HN3     SING  N  N  20  
653  N4     C8      DOUB  Y  N  21  
653  C8     "C1'"   SING  Y  N  22  
653  "C1'"  "C2'"   DOUB  Y  N  23  
653  "C1'"  "C6'"   SING  Y  N  24  
653  "C2'"  "C3'"   SING  Y  N  25  
653  "C2'"  "HC2'"  SING  N  N  26  
653  "C3'"  "CV'"   SING  N  N  27  
653  "C3'"  "C4'"   DOUB  Y  N  28  
653  "CV'"  "CW'"   SING  N  N  29  
653  "CV'"  H31A    SING  N  N  30  
653  "CV'"  H31B    SING  N  N  31  
653  "CW'"  "NX'"   SING  N  N  32  
653  "CW'"  H32A    SING  N  N  33  
653  "CW'"  H32B    SING  N  N  34  
653  "NX'"  H33A    SING  N  N  35  
653  "NX'"  H33B    SING  N  N  36  
653  "NX'"  H33C    SING  N  N  37  
653  "C4'"  "C5'"   SING  Y  N  38  
653  "C4'"  "HC4'"  SING  N  N  39  
653  "C5'"  "C6'"   DOUB  Y  N  40  
653  "C5'"  C1B     SING  Y  N  41  
653  "C6'"  "O6'"   SING  N  N  42  
653  C1B    C2B     DOUB  Y  N  43  
653  C1B    C6B     SING  Y  N  44  
653  C2B    C3B     SING  Y  N  45  
653  C2B    H2B     SING  N  N  46  
653  C3B    C4B     DOUB  Y  N  47  
653  C3B    H3B     SING  N  N  48  
653  C4B    C5B     SING  Y  N  49  
653  C4B    H4B     SING  N  N  50  
653  C5B    C6B     DOUB  Y  N  51  
653  C5B    H5B     SING  N  N  52  
653  C6B    H6B     SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
653  SMILES            ACDLabs               10.04  "[O-]c4c(c1ccccc1)cc(cc4c3nc2cc(ccc2n3)\C(=[NH2+])N)CC[NH3+]"  
653  SMILES_CANONICAL  CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(CC[NH3+])cc(c3[O-])c4ccccc4"  
653  SMILES            CACTVS                3.341  "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(CC[NH3+])cc(c3[O-])c4ccccc4"  
653  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)CC[NH3+]"  
653  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)CC[NH3+]"  
653  InChI             InChI                 1.03   "InChI=1S/C22H21N5O/c23-9-8-13-10-16(14-4-2-1-3-5-14)20(28)17(11-13)22-26-18-7-6-15(21(24)25)12-19(18)27-22/h1-7,10-12,28H,8-9,23H2,(H3,24,25)(H,26,27)/p+1"  
653  InChIKey          InChI                 1.03   YYUZFCLHOQHMPT-UHFFFAOYSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
653  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-5-(2-ammonioethyl)biphenyl-2-olate"  
653  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-4-(2-azaniumylethyl)-6-phenyl-phenolate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
653  "Create component"      2003-03-14  RCSB  
653  "Modify aromatic_flag"  2011-06-04  RCSB  
653  "Modify descriptor"     2011-06-04  RCSB  
653  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     653
_pdbx_chem_comp_synonyms.name        CRA_23653
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
