data_II3
# 
_chem_comp.id                                    II3 
_chem_comp.name                                  "(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C40 H54 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Monadoxanthin 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-01 
_chem_comp.pdbx_modified_date                    2023-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        566.856 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     II3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Y7B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
II3 C03 C1  C 0 1 N N N 219.487 163.013 149.395 -12.139 0.143  -1.190 C03 II3 1  
II3 C04 C2  C 0 1 N N R 218.368 163.284 148.430 -11.370 -0.238 0.077  C04 II3 2  
II3 C05 C3  C 0 1 N N N 220.701 163.780 148.939 -13.598 -0.302 -1.029 C05 II3 3  
II3 C06 C4  C 0 1 N N R 220.454 165.268 149.083 -14.243 0.544  0.071  C06 II3 4  
II3 C07 C5  C 0 1 N N N 218.086 164.741 148.531 -12.117 0.222  1.294  C07 II3 5  
II3 C08 C6  C 0 1 N N N 219.064 163.507 150.763 -12.082 1.659  -1.389 C08 II3 6  
II3 C09 C7  C 0 1 N N N 219.810 161.537 149.425 -11.518 -0.558 -2.399 C09 II3 7  
II3 C10 C8  C 0 1 N N N 219.090 165.615 148.546 -13.371 0.556  1.292  C10 II3 8  
II3 C11 C9  C 0 1 N N N 201.692 151.696 159.363 11.584  1.702  -0.103 C11 II3 9  
II3 C12 C10 C 0 1 N N N 217.177 162.415 148.767 -10.010 0.411  0.050  C12 II3 10 
II3 C13 C11 C 0 1 N N N 200.386 151.580 158.621 12.976  2.153  -0.549 C13 II3 11 
II3 C14 C12 C 0 1 N N R 199.266 151.515 159.637 14.021  1.418  0.299  C14 II3 12 
II3 C15 C13 C 0 1 N N N 216.688 165.242 148.603 -11.365 0.301  2.598  C15 II3 13 
II3 C16 C14 C 0 1 N N N 201.712 153.071 159.916 11.516  0.204  -0.058 C16 II3 14 
II3 C17 C15 C 0 1 N N N 199.466 152.539 160.747 13.992  -0.066 -0.071 C17 II3 15 
II3 C18 C16 C 0 1 N N N 200.584 153.508 160.452 12.582  -0.579 -0.040 C18 II3 16 
II3 C19 C17 C 0 1 N N N 202.891 151.507 158.452 10.543  2.228  -1.094 C19 II3 17 
II3 C20 C18 C 0 1 N N N 201.723 150.726 160.528 11.289  2.266  1.289  C20 II3 18 
II3 C21 C19 C 0 1 N N N 216.304 162.652 149.739 -8.908  -0.345 0.067  C21 II3 19 
II3 C22 C20 C 0 1 N N N 200.404 154.954 160.783 12.368  -2.070 0.016  C22 II3 20 
II3 C23 C21 C 0 1 N N N 202.764 153.759 159.852 10.224  -0.414 -0.033 C23 II3 21 
II3 C24 C22 C 0 1 N N N 215.193 161.698 149.931 -7.629  0.267  0.042  C24 II3 22 
II3 C25 C23 C 0 1 N N N 214.924 160.664 148.895 -7.512  1.768  -0.003 C25 II3 23 
II3 C26 C24 C 0 1 N N N 214.419 161.735 151.020 -6.508  -0.502 0.059  C26 II3 24 
II3 C27 C25 C 0 1 N N N 203.749 154.416 159.760 9.165   -0.920 -0.012 C27 II3 25 
II3 C28 C26 C 0 1 N N N 204.752 155.166 159.640 7.873   -1.537 0.013  C28 II3 26 
II3 C29 C27 C 0 1 N N N 213.328 160.779 151.213 -5.240  0.104  0.034  C29 II3 27 
II3 C30 C28 C 0 1 N N N 205.161 156.027 160.788 7.756   -3.039 0.059  C30 II3 28 
II3 C31 C29 C 0 1 N N N 205.449 155.223 158.495 6.747   -0.765 -0.004 C31 II3 29 
II3 C32 C30 C 0 1 N N N 212.740 160.702 152.407 -4.114  -0.668 0.051  C32 II3 30 
II3 C33 C31 C 0 1 N N N 211.642 159.763 152.699 -2.850  -0.064 0.026  C33 II3 31 
II3 C34 C32 C 0 1 N N N 206.595 156.120 158.347 5.483   -1.369 0.021  C34 II3 32 
II3 C35 C33 C 0 1 N N N 211.161 158.814 151.655 -2.733  1.438  -0.019 C35 II3 33 
II3 C36 C34 C 0 1 N N N 211.081 159.745 153.912 -1.714  -0.842 0.044  C36 II3 34 
II3 C37 C35 C 0 1 N N N 207.150 156.284 157.149 4.347   -0.591 0.004  C37 II3 35 
II3 C38 C36 C 0 1 N N N 208.286 157.198 156.930 3.084   -1.194 0.029  C38 II3 36 
II3 C39 C37 C 0 1 N N N 209.997 158.822 154.236 -0.451  -0.239 0.019  C39 II3 37 
II3 C40 C38 C 0 1 N N N 208.821 157.310 155.705 1.948   -0.415 0.011  C40 II3 38 
II3 C41 C39 C 0 1 N N N 209.932 158.216 155.421 0.685   -1.018 0.036  C41 II3 39 
II3 C42 C40 C 0 1 N N N 208.814 158.019 158.061 2.967   -2.696 0.074  C42 II3 40 
II3 O01 O1  O 0 1 N N N 221.445 165.962 148.321 -15.517 -0.010 0.408  O01 II3 41 
II3 O02 O2  O 0 1 N N N 198.043 151.786 158.959 15.319  1.954  0.034  O02 II3 42 
II3 H1  H1  H 0 1 N N N 218.706 163.048 147.410 -11.250 -1.321 0.115  H1  II3 43 
II3 H2  H2  H 0 1 N N N 220.906 163.545 147.884 -14.132 -0.152 -1.967 H2  II3 44 
II3 H3  H3  H 0 1 N N N 221.566 163.493 149.554 -13.631 -1.355 -0.749 H3  II3 45 
II3 H4  H4  H 0 1 N N N 220.514 165.548 150.145 -14.376 1.564  -0.288 H4  II3 46 
II3 H6  H6  H 0 1 N N N 219.870 163.318 151.487 -12.637 1.928  -2.288 H6  II3 47 
II3 H7  H7  H 0 1 N N N 218.859 164.587 150.716 -12.525 2.156  -0.526 H7  II3 48 
II3 H8  H8  H 0 1 N N N 218.155 162.975 151.080 -11.044 1.973  -1.496 H8  II3 49 
II3 H9  H9  H 0 1 N N N 220.630 161.355 150.135 -10.479 -0.246 -2.506 H9  II3 50 
II3 H10 H10 H 0 1 N N N 218.920 160.973 149.741 -11.559 -1.638 -2.254 H10 II3 51 
II3 H11 H11 H 0 1 N N N 220.115 161.208 148.421 -12.072 -0.291 -3.299 H11 II3 52 
II3 H12 H12 H 0 1 N N N 218.920 166.609 148.159 -13.814 0.867  2.227  H12 II3 53 
II3 H14 H14 H 0 1 N N N 217.024 161.529 148.168 -9.926  1.488  0.018  H14 II3 54 
II3 H15 H15 H 0 1 N N N 200.248 152.457 157.971 13.121  1.909  -1.601 H15 II3 55 
II3 H16 H16 H 0 1 N N N 200.386 150.666 158.009 13.077  3.228  -0.402 H16 II3 56 
II3 H17 H17 H 0 1 N N N 199.241 150.509 160.080 13.783  1.535  1.357  H17 II3 57 
II3 H18 H18 H 0 1 N N N 216.695 166.340 148.673 -10.924 1.292  2.703  H18 II3 58 
II3 H19 H19 H 0 1 N N N 216.142 164.935 147.699 -12.052 0.119  3.424  H19 II3 59 
II3 H20 H20 H 0 1 N N N 216.193 164.821 149.491 -10.576 -0.451 2.608  H20 II3 60 
II3 H21 H21 H 0 1 N N N 198.533 153.107 160.874 14.401  -0.197 -1.073 H21 II3 61 
II3 H22 H22 H 0 1 N N N 199.700 152.005 161.680 14.595  -0.629 0.642  H22 II3 62 
II3 H23 H23 H 0 1 N N N 203.817 151.601 159.039 9.548   1.918  -0.774 H23 II3 63 
II3 H24 H24 H 0 1 N N N 202.848 150.509 157.992 10.590  3.316  -1.128 H24 II3 64 
II3 H25 H25 H 0 1 N N N 202.877 152.275 157.664 10.748  1.824  -2.085 H25 II3 65 
II3 H26 H26 H 0 1 N N N 200.842 150.890 161.166 12.027  1.889  1.997  H26 II3 66 
II3 H27 H27 H 0 1 N N N 201.712 149.694 160.146 11.338  3.354  1.258  H27 II3 67 
II3 H28 H28 H 0 1 N N N 202.638 150.889 161.117 10.293  1.955  1.603  H28 II3 68 
II3 H29 H29 H 0 1 N N N 216.404 163.520 150.373 -8.991  -1.421 0.100  H29 II3 69 
II3 H30 H30 H 0 1 N N N 199.405 155.110 161.216 12.307  -2.466 -0.998 H30 II3 70 
II3 H31 H31 H 0 1 N N N 201.171 155.262 161.509 13.203  -2.537 0.539  H31 II3 71 
II3 H32 H32 H 0 1 N N N 200.504 155.555 159.867 11.441  -2.285 0.546  H32 II3 72 
II3 H33 H33 H 0 1 N N N 214.067 160.048 149.205 -7.478  2.161  1.013  H33 II3 73 
II3 H34 H34 H 0 1 N N N 214.695 161.155 147.938 -6.599  2.046  -0.531 H34 II3 74 
II3 H35 H35 H 0 1 N N N 215.811 160.025 148.776 -8.374  2.184  -0.525 H35 II3 75 
II3 H36 H36 H 0 1 N N N 214.603 162.486 151.774 -6.592  -1.578 0.092  H36 II3 76 
II3 H37 H37 H 0 1 N N N 213.004 160.145 150.401 -5.156  1.180  0.002  H37 II3 77 
II3 H38 H38 H 0 1 N N N 204.484 155.852 161.637 7.733   -3.370 1.097  H38 II3 78 
II3 H39 H39 H 0 1 N N N 206.191 155.779 161.083 6.838   -3.347 -0.441 H39 II3 79 
II3 H40 H40 H 0 1 N N N 205.109 157.085 160.490 8.613   -3.485 -0.447 H40 II3 80 
II3 H41 H41 H 0 1 N N N 205.158 154.594 157.666 6.831   0.311  -0.036 H41 II3 81 
II3 H42 H42 H 0 1 N N N 213.083 161.356 153.195 -4.198  -1.744 0.084  H42 II3 82 
II3 H43 H43 H 0 1 N N N 206.988 156.646 159.205 5.399   -2.445 0.054  H43 II3 83 
II3 H44 H44 H 0 1 N N N 210.343 158.202 152.064 -2.699  1.831  0.997  H44 II3 84 
II3 H45 H45 H 0 1 N N N 210.796 159.380 150.785 -1.820  1.716  -0.546 H45 II3 85 
II3 H46 H46 H 0 1 N N N 211.989 158.159 151.345 -3.595  1.854  -0.541 H46 II3 86 
II3 H47 H47 H 0 1 N N N 211.437 160.428 154.669 -1.798  -1.919 0.076  H47 II3 87 
II3 H48 H48 H 0 1 N N N 206.756 155.730 156.310 4.431   0.486  -0.029 H48 II3 88 
II3 H49 H49 H 0 1 N N N 209.232 158.626 153.500 -0.368  0.837  -0.014 H49 II3 89 
II3 H50 H50 H 0 1 N N N 208.417 156.711 154.902 2.032   0.661  -0.021 H50 II3 90 
II3 H51 H51 H 0 1 N N N 210.694 158.393 156.165 0.601   -2.094 0.069  H51 II3 91 
II3 H52 H52 H 0 1 N N N 208.251 157.788 158.977 2.945   -3.027 1.112  H52 II3 92 
II3 H53 H53 H 0 1 N N N 209.878 157.787 158.217 2.049   -3.004 -0.426 H53 II3 93 
II3 H54 H54 H 0 1 N N N 208.702 159.087 157.822 3.824   -3.142 -0.431 H54 II3 94 
II3 H55 H55 H 0 1 N N N 222.309 165.748 148.654 -15.986 0.476  1.101  H55 II3 95 
II3 H56 H56 H 0 1 N N N 197.323 151.751 159.578 16.029  1.533  0.538  H56 II3 96 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
II3 O01 C06 SING N N 1  
II3 C04 C07 SING N N 2  
II3 C04 C12 SING N N 3  
II3 C04 C03 SING N N 4  
II3 C07 C10 DOUB N N 5  
II3 C07 C15 SING N N 6  
II3 C10 C06 SING N N 7  
II3 C12 C21 DOUB N E 8  
II3 C25 C24 SING N N 9  
II3 C05 C06 SING N N 10 
II3 C05 C03 SING N N 11 
II3 C03 C09 SING N N 12 
II3 C03 C08 SING N N 13 
II3 C21 C24 SING N N 14 
II3 C24 C26 DOUB N E 15 
II3 C26 C29 SING N N 16 
II3 C29 C32 DOUB N E 17 
II3 C35 C33 SING N N 18 
II3 C32 C33 SING N N 19 
II3 C33 C36 DOUB N E 20 
II3 C36 C39 SING N N 21 
II3 C39 C41 DOUB N E 22 
II3 C41 C40 SING N N 23 
II3 C40 C38 DOUB N E 24 
II3 C38 C37 SING N N 25 
II3 C38 C42 SING N N 26 
II3 C37 C34 DOUB N E 27 
II3 C34 C31 SING N N 28 
II3 C19 C11 SING N N 29 
II3 C31 C28 DOUB N E 30 
II3 C13 C11 SING N N 31 
II3 C13 C14 SING N N 32 
II3 O02 C14 SING N N 33 
II3 C11 C16 SING N N 34 
II3 C11 C20 SING N N 35 
II3 C14 C17 SING N N 36 
II3 C28 C27 SING N N 37 
II3 C28 C30 SING N N 38 
II3 C27 C23 TRIP N N 39 
II3 C23 C16 SING N N 40 
II3 C16 C18 DOUB N N 41 
II3 C18 C17 SING N N 42 
II3 C18 C22 SING N N 43 
II3 C04 H1  SING N N 44 
II3 C05 H2  SING N N 45 
II3 C05 H3  SING N N 46 
II3 C06 H4  SING N N 47 
II3 C08 H6  SING N N 48 
II3 C08 H7  SING N N 49 
II3 C08 H8  SING N N 50 
II3 C09 H9  SING N N 51 
II3 C09 H10 SING N N 52 
II3 C09 H11 SING N N 53 
II3 C10 H12 SING N N 54 
II3 C12 H14 SING N N 55 
II3 C13 H15 SING N N 56 
II3 C13 H16 SING N N 57 
II3 C14 H17 SING N N 58 
II3 C15 H18 SING N N 59 
II3 C15 H19 SING N N 60 
II3 C15 H20 SING N N 61 
II3 C17 H21 SING N N 62 
II3 C17 H22 SING N N 63 
II3 C19 H23 SING N N 64 
II3 C19 H24 SING N N 65 
II3 C19 H25 SING N N 66 
II3 C20 H26 SING N N 67 
II3 C20 H27 SING N N 68 
II3 C20 H28 SING N N 69 
II3 C21 H29 SING N N 70 
II3 C22 H30 SING N N 71 
II3 C22 H31 SING N N 72 
II3 C22 H32 SING N N 73 
II3 C25 H33 SING N N 74 
II3 C25 H34 SING N N 75 
II3 C25 H35 SING N N 76 
II3 C26 H36 SING N N 77 
II3 C29 H37 SING N N 78 
II3 C30 H38 SING N N 79 
II3 C30 H39 SING N N 80 
II3 C30 H40 SING N N 81 
II3 C31 H41 SING N N 82 
II3 C32 H42 SING N N 83 
II3 C34 H43 SING N N 84 
II3 C35 H44 SING N N 85 
II3 C35 H45 SING N N 86 
II3 C35 H46 SING N N 87 
II3 C36 H47 SING N N 88 
II3 C37 H48 SING N N 89 
II3 C39 H49 SING N N 90 
II3 C40 H50 SING N N 91 
II3 C41 H51 SING N N 92 
II3 C42 H52 SING N N 93 
II3 C42 H53 SING N N 94 
II3 C42 H54 SING N N 95 
II3 O01 H55 SING N N 96 
II3 O02 H56 SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
II3 InChI            InChI                1.06  "InChI=1S/C40H54O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-21,23,25,35-37,41-42H,26-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,29-15+,30-16+,31-19+,32-20+/t35-,36+,37-/m0/s1" 
II3 InChIKey         InChI                1.06  VAGYSFRRYPPSFX-RLVOMNFVSA-N                                                                                                                                                                                                                                          
II3 SMILES_CANONICAL CACTVS               3.385 "CC(=C\C=C\C=C(C)\C=C\C=C(C)\C#CC1=C(C)C[C@@H](O)CC1(C)C)/C=C/C=C(C)/C=C/[C@H]2C(=C[C@H](O)CC2(C)C)C"                                                                                                                                                                
II3 SMILES           CACTVS               3.385 "CC(=CC=CC=C(C)C=CC=C(C)C#CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C=C[CH]2C(=C[CH](O)CC2(C)C)C"                                                                                                                                                                             
II3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=C[C@@H](CC2(C)C)O)C)/C)/C"                                                                                                                                                         
II3 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CC(CC2(C)C)O)C)C)C"                                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           II3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
II3 "Create component" 2022-07-01 PDBJ 
II3 "Initial release"  2023-04-12 RCSB 
II3 "Modify synonyms"  2023-04-19 PDBJ 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      II3 
_pdbx_chem_comp_synonyms.name         Monadoxanthin 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
