data_JC3
#

_chem_comp.id                                   JC3
_chem_comp.name                                 "3-methyl-2-[[(3R,5R)-1-methyl-5-phenyl-piperidin-3-yl]amino]-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H26 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-14
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       338.447
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JC3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7DN4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JC3  C13   C1   C  0  1  N  N  N  51.124  -26.045  -14.023   5.573   1.575   1.650  C13   JC3   1  
JC3  C15   C2   C  0  1  N  N  N  52.640  -27.950  -13.931   4.496  -0.137   0.312  C15   JC3   2  
JC3  C20   C3   C  0  1  Y  N  N  54.873  -30.083   -5.948  -4.198  -0.071   0.507  C20   JC3   3  
JC3  C21   C4   C  0  1  Y  N  N  55.442  -31.336   -5.810  -4.900   0.077   1.688  C21   JC3   4  
JC3  C22   C5   C  0  1  Y  N  N  56.439  -31.522   -4.890  -6.140  -0.517   1.834  C22   JC3   5  
JC3  C24   C6   C  0  1  Y  N  N  56.311  -29.195   -4.252  -5.975  -1.406  -0.383  C24   JC3   6  
JC3  C1    C7   C  0  1  N  N  N  50.468  -31.105   -7.031  -1.580   3.214  -2.016  C01   JC3   7  
JC3  C3    C8   C  0  1  N  N  N  52.364  -30.306   -6.429  -2.876   1.553  -0.823  C03   JC3   8  
JC3  C4    C9   C  0  1  N  N  R  53.729  -29.860   -7.016  -2.843   0.571   0.350  C04   JC3   9  
JC3  C5    C10  C  0  1  N  N  N  54.016  -30.548   -8.243  -1.794  -0.510   0.075  C05   JC3  10  
JC3  C6    C11  C  0  1  N  N  R  53.033  -30.086   -9.205  -0.432   0.156  -0.142  C06   JC3  11  
JC3  C7    C12  C  0  1  N  N  N  51.561  -30.398   -8.805  -0.535   1.151  -1.301  C07   JC3  12  
JC3  C9    C13  C  0  1  N  N  N  53.203  -29.719  -11.666   1.891  -0.633  -0.207  C09   JC3  13  
JC3  C11   C14  C  0  1  N  N  N  52.212  -27.581  -12.541   3.534   0.787   0.595  C11   JC3  14  
JC3  C12   C15  C  0  1  N  N  N  51.532  -26.273  -12.556   4.166   2.023   1.198  C12   JC3  15  
JC3  C14   C16  C  0  1  N  N  N  52.196  -26.863  -14.817   5.858   0.392   0.700  C14   JC3  16  
JC3  C16   C17  C  0  1  N  N  N  53.354  -29.238  -14.215   4.116  -1.366  -0.259  C16   JC3  17  
JC3  C19   C18  C  0  1  N  N  N  54.302  -31.363  -13.150   2.381  -2.860  -1.104  C19   JC3  18  
JC3  C23   C19  C  0  1  Y  N  N  56.866  -30.456   -4.122  -6.677  -1.259   0.798  C23   JC3  19  
JC3  C25   C20  C  0  1  Y  N  N  55.300  -29.004   -5.167  -4.734  -0.813  -0.529  C25   JC3  20  
JC3  N2    N1   N  0  1  N  N  N  51.283  -30.290   -7.387  -1.551   2.164  -0.989  N02   JC3  21  
JC3  N8    N2   N  0  1  N  N  N  53.473  -30.604  -10.526   0.567  -0.866  -0.462  N08   JC3  22  
JC3  N10   N3   N  0  1  N  N  N  52.485  -28.440  -11.440   2.255   0.514   0.327  N10   JC3  23  
JC3  N18   N4   N  0  1  N  N  N  53.619  -30.094  -13.035   2.809  -1.591  -0.510  N18   JC3  24  
JC3  O17   O1   O  0  1  N  N  N  53.672  -29.546  -15.356   4.954  -2.213  -0.524  O17   JC3  25  
JC3  H131  H1   H  0  0  N  N  N  51.168  -24.977  -14.284   6.300   2.374   1.504  H131  JC3  26  
JC3  H132  H2   H  0  0  N  N  N  50.111  -26.428  -14.216   5.561   1.248   2.690  H132  JC3  27  
JC3  H211  H4   H  0  0  N  N  N  55.103  -32.159   -6.422  -4.481   0.656   2.497  H211  JC3  28  
JC3  H221  H5   H  0  0  N  N  N  56.889  -32.496   -4.766  -6.689  -0.402   2.757  H221  JC3  29  
JC3  H241  H6   H  0  0  N  N  N  56.665  -28.374   -3.646  -6.394  -1.986  -1.192  H241  JC3  30  
JC3  H012  H7   H  0  0  N  N  N  50.283  -30.993   -5.952  -1.884   2.781  -2.969  H012  JC3  31  
JC3  H013  H8   H  0  0  N  N  N  49.529  -30.949   -7.582  -2.292   3.987  -1.725  H013  JC3  32  
JC3  H011  H9   H  0  0  N  N  N  50.849  -32.117   -7.234  -0.587   3.652  -2.116  H011  JC3  33  
JC3  H031  H10  H  0  0  N  N  N  52.104  -29.629   -5.602  -3.148   1.021  -1.735  H031  JC3  34  
JC3  H032  H11  H  0  0  N  N  N  52.471  -31.331   -6.044  -3.612   2.332  -0.624  H032  JC3  35  
JC3  H041  H12  H  0  0  N  N  N  53.671  -28.779   -7.213  -2.586   1.105   1.265  H041  JC3  36  
JC3  H051  H13  H  0  0  N  N  N  53.928  -31.635   -8.100  -1.736  -1.187   0.927  H051  JC3  37  
JC3  H052  H14  H  0  0  N  N  N  55.032  -30.304   -8.588  -2.073  -1.070  -0.817  H052  JC3  38  
JC3  H061  H15  H  0  0  N  N  N  53.110  -28.990   -9.250  -0.136   0.683   0.765  H061  JC3  39  
JC3  H071  H16  H  0  0  N  N  N  50.905  -29.694   -9.337   0.429   1.637  -1.449  H071  JC3  40  
JC3  H072  H17  H  0  0  N  N  N  51.330  -31.426   -9.122  -0.818   0.621  -2.210  H072  JC3  41  
JC3  H121  H19  H  0  0  N  N  N  52.215  -25.480  -12.218   3.585   2.366   2.054  H121  JC3  42  
JC3  H122  H20  H  0  0  N  N  N  50.644  -26.293  -11.908   4.243   2.812   0.450  H122  JC3  43  
JC3  H142  H21  H  0  0  N  N  N  51.753  -27.279  -15.734   6.396   0.737  -0.184  H142  JC3  44  
JC3  H141  H22  H  0  0  N  N  N  53.047  -26.217  -15.081   6.431  -0.379   1.215  H141  JC3  45  
JC3  H193  H23  H  0  0  N  N  N  54.389  -31.825  -12.155   3.251  -3.494  -1.273  H193  JC3  46  
JC3  H191  H24  H  0  0  N  N  N  53.730  -32.028  -13.814   1.690  -3.363  -0.427  H191  JC3  47  
JC3  H192  H25  H  0  0  N  N  N  55.306  -31.202  -13.569   1.882  -2.666  -2.054  H192  JC3  48  
JC3  H231  H26  H  0  0  N  N  N  57.654  -30.611   -3.400  -7.645  -1.724   0.912  H231  JC3  49  
JC3  H251  H27  H  0  0  N  N  N  54.842  -28.032   -5.280  -4.185  -0.929  -1.452  H251  JC3  50  
JC3  H081  H29  H  0  0  N  N  N  53.921  -31.492  -10.631   0.290  -1.709  -0.856  H081  JC3  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JC3  O17  C16   DOUB  N  N   1  
JC3  C14  C13   SING  N  N   2  
JC3  C14  C15   SING  N  N   3  
JC3  C16  C15   SING  N  N   4  
JC3  C16  N18   SING  N  N   5  
JC3  C13  C12   SING  N  N   6  
JC3  C15  C11   DOUB  N  N   7  
JC3  C19  N18   SING  N  N   8  
JC3  N18  C9    SING  N  N   9  
JC3  C12  C11   SING  N  N  10  
JC3  C11  N10   SING  N  N  11  
JC3  C9   N10   DOUB  N  N  12  
JC3  C9   N8    SING  N  N  13  
JC3  N8   C6    SING  N  N  14  
JC3  C6   C7    SING  N  N  15  
JC3  C6   C5    SING  N  N  16  
JC3  C7   N2    SING  N  N  17  
JC3  C5   C4    SING  N  N  18  
JC3  N2   C1    SING  N  N  19  
JC3  N2   C3    SING  N  N  20  
JC3  C4   C3    SING  N  N  21  
JC3  C4   C20   SING  N  N  22  
JC3  C20  C21   DOUB  Y  N  23  
JC3  C20  C25   SING  Y  N  24  
JC3  C21  C22   SING  Y  N  25  
JC3  C25  C24   DOUB  Y  N  26  
JC3  C22  C23   DOUB  Y  N  27  
JC3  C24  C23   SING  Y  N  28  
JC3  C13  H131  SING  N  N  29  
JC3  C13  H132  SING  N  N  30  
JC3  C21  H211  SING  N  N  31  
JC3  C22  H221  SING  N  N  32  
JC3  C24  H241  SING  N  N  33  
JC3  C1   H012  SING  N  N  34  
JC3  C1   H013  SING  N  N  35  
JC3  C1   H011  SING  N  N  36  
JC3  C3   H031  SING  N  N  37  
JC3  C3   H032  SING  N  N  38  
JC3  C4   H041  SING  N  N  39  
JC3  C5   H051  SING  N  N  40  
JC3  C5   H052  SING  N  N  41  
JC3  C6   H061  SING  N  N  42  
JC3  C7   H071  SING  N  N  43  
JC3  C7   H072  SING  N  N  44  
JC3  C12  H121  SING  N  N  45  
JC3  C12  H122  SING  N  N  46  
JC3  C14  H142  SING  N  N  47  
JC3  C14  H141  SING  N  N  48  
JC3  C19  H193  SING  N  N  49  
JC3  C19  H191  SING  N  N  50  
JC3  C19  H192  SING  N  N  51  
JC3  C23  H231  SING  N  N  52  
JC3  C25  H251  SING  N  N  53  
JC3  N8   H081  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JC3  InChI             InChI                 1.03   "InChI=1S/C20H26N4O/c1-23-12-15(14-7-4-3-5-8-14)11-16(13-23)21-20-22-18-10-6-9-17(18)19(25)24(20)2/h3-5,7-8,15-16H,6,9-13H2,1-2H3,(H,21,22)/t15-,16+/m0/s1"  
JC3  InChIKey          InChI                 1.03   PUACXQJMNIDQMB-JKSUJKDBSA-N  
JC3  SMILES_CANONICAL  CACTVS                3.385  "CN1C[C@@H](C[C@@H](C1)c2ccccc2)NC3=NC4=C(CCC4)C(=O)N3C"  
JC3  SMILES            CACTVS                3.385  "CN1C[CH](C[CH](C1)c2ccccc2)NC3=NC4=C(CCC4)C(=O)N3C"  
JC3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1C[C@H](C[C@H](C1)NC2=NC3=C(CCC3)C(=O)N2C)c4ccccc4"  
JC3  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1CC(CC(C1)NC2=NC3=C(CCC3)C(=O)N2C)c4ccccc4"  
#
_pdbx_chem_comp_identifier.comp_id          JC3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-methyl-2-[[(3~{R},5~{R})-1-methyl-5-phenyl-piperidin-3-yl]amino]-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JC3  "Create component"  2021-05-14  PDBJ  
JC3  "Initial release"   2021-10-20  RCSB  
##
