data_LB3
#

_chem_comp.id                                   LB3
_chem_comp.name                                 "(9R,10R,11S,12R,13R,14R)-4-amino-9-(3,4-difluorophenyl)-6,7,8,9,10,11,12,13-octahydro-10,13-epoxy[1,3]diazecino[1,2-e]purine-11,12-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H18 F2 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-03-01
_chem_comp.pdbx_modified_date                   2022-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       404.371
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LB3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7U30
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LB3  N1   N1   N  0  1  Y  N  N  14.124  -37.333  -4.798   2.796   0.412   1.499  N1   LB3   1  
LB3  N3   N2   N  0  1  Y  N  N  13.532  -34.259  -2.812   4.534   2.713  -0.711  N3   LB3   2  
LB3  C4   C1   C  0  1  Y  N  N  21.675  -39.437  -6.384  -2.668   1.497   0.022  C4   LB3   3  
LB3  C5   C2   C  0  1  Y  N  N  20.360  -39.853  -6.189  -2.524   0.145   0.275  C5   LB3   4  
LB3  C6   C3   C  0  1  N  N  R  19.244  -38.825  -6.119  -1.155  -0.432   0.527  C6   LB3   5  
LB3  C7   C4   C  0  1  N  N  N  17.930  -39.328  -6.746  -1.120  -1.098   1.907  C7   LB3   6  
LB3  C8   C5   C  0  1  N  N  N  16.710  -39.587  -5.880   0.253  -1.051   2.556  C8   LB3   7  
LB3  C10  C6   C  0  1  Y  N  N  14.143  -36.248  -3.934   3.341   1.140   0.507  C10  LB3   8  
LB3  C13  C7   C  0  1  Y  N  N  15.403  -36.077  -3.375   2.895   0.589  -0.718  C13  LB3   9  
LB3  C15  C8   C  0  1  N  N  R  17.519  -37.343  -3.382   1.386  -1.365  -1.299  C15  LB3  10  
LB3  C17  C9   C  0  1  N  N  S  19.100  -39.137  -3.436  -0.074  -2.656   0.131  C17  LB3  11  
LB3  F1   F1   F  0  1  N  N  N  23.973  -39.972  -6.432  -4.067   3.349  -0.451  F1   LB3  12  
LB3  F    F2   F  0  1  N  N  N  23.432  -42.584  -6.168  -6.269   1.720  -0.396  F    LB3  13  
LB3  C9   C10  C  0  1  Y  N  N  15.373  -37.743  -4.797   2.056  -0.531   0.978  C9   LB3  14  
LB3  C3   C11  C  0  1  Y  N  N  22.684  -40.371  -6.385  -3.926   2.028  -0.204  C3   LB3  15  
LB3  O    O1   O  0  1  N  N  N  18.408  -37.123  -4.462   0.048  -0.915  -1.507  O    LB3  16  
LB3  C    C12  C  0  1  Y  N  N  22.411  -41.710  -6.238  -5.041   1.204  -0.176  C    LB3  17  
LB3  O2   O2   O  0  1  N  N  N  20.117  -38.822  -2.498  -0.801  -3.884   0.052  O2   LB3  18  
LB3  C11  C13  C  0  1  Y  N  N  13.170  -35.277  -3.626   4.201   2.252   0.498  C11  LB3  19  
LB3  C12  C14  C  0  1  Y  N  N  14.788  -34.223  -2.342   4.092   2.169  -1.827  C12  LB3  20  
LB3  N    N3   N  0  1  N  N  N  15.789  -38.459  -5.862   1.317  -1.492   1.661  N    LB3  21  
LB3  N2   N4   N  0  1  N  N  N  11.936  -35.271  -4.143   4.672   2.831   1.666  N2   LB3  22  
LB3  C16  C15  C  0  1  N  N  R  17.687  -38.803  -2.947   1.253  -2.763  -0.657  C16  LB3  23  
LB3  N5   N5   N  0  1  Y  N  N  16.185  -37.091  -3.899   2.090  -0.463  -0.395  N5   LB3  24  
LB3  N4   N6   N  0  1  Y  N  N  15.788  -35.083  -2.560   3.284   1.122  -1.875  N4   LB3  25  
LB3  C14  C16  C  0  1  N  N  R  19.249  -38.267  -4.680  -0.838  -1.512  -0.540  C14  LB3  26  
LB3  C2   C17  C  0  1  Y  N  N  20.094  -41.217  -6.069  -3.635  -0.678   0.297  C2   LB3  27  
LB3  C1   C18  C  0  1  Y  N  N  21.120  -42.150  -6.100  -4.893  -0.149   0.078  C1   LB3  28  
LB3  O1   O3   O  0  1  N  N  N  17.468  -39.018  -1.558   1.164  -3.775  -1.662  O1   LB3  29  
LB3  H1   H1   H  0  1  N  N  N  21.900  -38.391  -6.533  -1.800   2.138   0.005  H1   LB3  30  
LB3  H2   H2   H  0  1  N  N  N  19.570  -37.990  -6.756  -0.408   0.360   0.481  H2   LB3  31  
LB3  H3   H3   H  0  1  N  N  N  17.631  -38.579  -7.494  -1.834  -0.594   2.559  H3   LB3  32  
LB3  H4   H4   H  0  1  N  N  N  18.165  -40.277  -7.250  -1.422  -2.140   1.802  H4   LB3  33  
LB3  H5   H5   H  0  1  N  N  N  16.181  -40.468  -6.271   0.458  -0.027   2.869  H5   LB3  34  
LB3  H6   H6   H  0  1  N  N  N  17.044  -39.786  -4.851   0.247  -1.691   3.438  H6   LB3  35  
LB3  H7   H7   H  0  1  N  N  N  17.743  -36.676  -2.536   1.923  -1.439  -2.245  H7   LB3  36  
LB3  H8   H8   H  0  1  N  N  N  19.145  -40.198  -3.724   0.121  -2.396   1.171  H8   LB3  37  
LB3  H9   H9   H  0  1  N  N  N  20.017  -39.368  -1.727  -0.335  -4.642   0.432  H9   LB3  38  
LB3  H10  H10  H  0  1  N  N  N  15.023  -33.386  -1.701   4.410   2.605  -2.762  H10  LB3  39  
LB3  H11  H11  H  0  1  N  N  N  16.202  -37.785  -6.474   1.506  -2.436   1.545  H11  LB3  40  
LB3  H12  H12  H  0  1  N  N  N  11.444  -34.461  -3.824   4.410   2.469   2.526  H12  LB3  41  
LB3  H13  H13  H  0  1  N  N  N  11.993  -35.255  -5.141   5.264   3.598   1.622  H13  LB3  42  
LB3  H14  H14  H  0  1  N  N  N  16.977  -39.412  -3.526   2.087  -2.959   0.017  H14  LB3  43  
LB3  H15  H15  H  0  1  N  N  N  20.268  -37.865  -4.579  -1.750  -1.876  -1.014  H15  LB3  44  
LB3  H16  H16  H  0  1  N  N  N  19.074  -41.552  -5.950  -3.520  -1.733   0.495  H16  LB3  45  
LB3  H17  H17  H  0  1  N  N  N  20.905  -43.205  -6.017  -5.760  -0.792   0.099  H17  LB3  46  
LB3  H18  H18  H  0  1  N  N  N  16.573  -38.788  -1.339   1.079  -4.672  -1.311  H18  LB3  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LB3  C7   C6   SING  N  N   1  
LB3  C7   C8   SING  N  N   2  
LB3  F1   C3   SING  N  N   3  
LB3  C3   C4   DOUB  Y  N   4  
LB3  C3   C    SING  Y  N   5  
LB3  C4   C5   SING  Y  N   6  
LB3  C    F    SING  N  N   7  
LB3  C    C1   DOUB  Y  N   8  
LB3  C5   C6   SING  N  N   9  
LB3  C5   C2   DOUB  Y  N  10  
LB3  C6   C14  SING  N  N  11  
LB3  C1   C2   SING  Y  N  12  
LB3  C8   N    SING  N  N  13  
LB3  N    C9   SING  N  N  14  
LB3  N1   C9   DOUB  Y  N  15  
LB3  N1   C10  SING  Y  N  16  
LB3  C9   N5   SING  Y  N  17  
LB3  C14  O    SING  N  N  18  
LB3  C14  C17  SING  N  N  19  
LB3  O    C15  SING  N  N  20  
LB3  N2   C11  SING  N  N  21  
LB3  C10  C11  DOUB  Y  N  22  
LB3  C10  C13  SING  Y  N  23  
LB3  N5   C15  SING  N  N  24  
LB3  N5   C13  SING  Y  N  25  
LB3  C11  N3   SING  Y  N  26  
LB3  C17  C16  SING  N  N  27  
LB3  C17  O2   SING  N  N  28  
LB3  C15  C16  SING  N  N  29  
LB3  C13  N4   DOUB  Y  N  30  
LB3  C16  O1   SING  N  N  31  
LB3  N3   C12  DOUB  Y  N  32  
LB3  N4   C12  SING  Y  N  33  
LB3  C4   H1   SING  N  N  34  
LB3  C6   H2   SING  N  N  35  
LB3  C7   H3   SING  N  N  36  
LB3  C7   H4   SING  N  N  37  
LB3  C8   H5   SING  N  N  38  
LB3  C8   H6   SING  N  N  39  
LB3  C15  H7   SING  N  N  40  
LB3  C17  H8   SING  N  N  41  
LB3  O2   H9   SING  N  N  42  
LB3  C12  H10  SING  N  N  43  
LB3  N    H11  SING  N  N  44  
LB3  N2   H12  SING  N  N  45  
LB3  N2   H13  SING  N  N  46  
LB3  C16  H14  SING  N  N  47  
LB3  C14  H15  SING  N  N  48  
LB3  C2   H16  SING  N  N  49  
LB3  C1   H17  SING  N  N  50  
LB3  O1   H18  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LB3  SMILES            ACDLabs               12.01  "Fc1ccc(cc1F)C1CCNc2nc3c(N)ncnc3n2C2OC1C(O)C2O"  
LB3  InChI             InChI                 1.03   "InChI=1S/C18H18F2N6O3/c19-9-2-1-7(5-10(9)20)8-3-4-22-18-25-11-15(21)23-6-24-16(11)26(18)17-13(28)12(27)14(8)29-17/h1-2,5-6,8,12-14,17,27-28H,3-4H2,(H,22,25)(H2,21,23,24)/t8-,12+,13-,14-,17-/m1/s1"  
LB3  InChIKey          InChI                 1.03   JZKFSFVCJQMNFZ-TXXSDKCWSA-N  
LB3  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n3[C@@H]4O[C@@H]([C@@H](O)[C@H]4O)[C@H](CCNc3nc12)c5ccc(F)c(F)c5"  
LB3  SMILES            CACTVS                3.385  "Nc1ncnc2n3[CH]4O[CH]([CH](O)[CH]4O)[CH](CCNc3nc12)c5ccc(F)c(F)c5"  
LB3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1[C@H]2CCNc3nc4c(ncnc4n3[C@H]5[C@@H]([C@@H]([C@@H]2O5)O)O)N)F)F"  
LB3  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1C2CCNc3nc4c(ncnc4n3C5C(C(C2O5)O)O)N)F)F"  
#
_pdbx_chem_comp_identifier.comp_id          LB3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(9R,10R,11S,12R,13R,14R)-4-amino-9-(3,4-difluorophenyl)-6,7,8,9,10,11,12,13-octahydro-10,13-epoxy[1,3]diazecino[1,2-e]purine-11,12-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LB3  "Create component"  2022-03-01  RCSB  
LB3  "Initial release"   2022-06-01  RCSB  
##
