data_LE3
# 
_chem_comp.id                                    LE3 
_chem_comp.name                                  "N-{4-[(R)-methylsulfinyl]butyl}thioformamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H13 N O S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "L-Sulforaphane, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        179.304 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LE3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SMC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LE3 C    C    C 0 1 N N N N N N -63.783 29.577 41.587 4.193  0.614  -0.169 C    LE3 1  
LE3 N    N    N 0 1 N N N N N N -63.093 28.868 42.579 2.928  1.075  -0.234 N    LE3 2  
LE3 S    S    S 0 1 N N N N N N -63.144 29.731 40.016 4.467  -0.924 0.172  S    LE3 3  
LE3 C1   C1   C 0 1 N N N N N N -62.003 28.074 41.996 1.804  0.169  0.013  C1   LE3 4  
LE3 C2   C2   C 0 1 N N N N N N -61.916 26.728 42.706 0.489  0.938  -0.122 C2   LE3 5  
LE3 C3   C3   C 0 1 N N N N N N -62.212 26.866 44.194 -0.685 -0.009 0.136  C3   LE3 6  
LE3 C4   C4   C 0 1 N N N N N N -61.742 25.640 44.968 -2.000 0.760  0.000  C4   LE3 7  
LE3 S5   S5   S 0 1 N N R N N N -62.609 24.115 44.492 -3.392 -0.362 0.306  S5   LE3 8  
LE3 O5A  O5A  O 0 1 N N N N N N -64.086 24.344 44.585 -3.412 -1.375 -0.691 O5A  LE3 9  
LE3 C5B  C5B  C 0 1 N N N N N N -62.113 23.052 45.826 -4.837 0.715  0.104  C5B  LE3 10 
LE3 H1   H1   H 0 1 N N N N N N -62.200 27.912 40.926 1.827  -0.644 -0.713 H1   LE3 11 
LE3 H1A  H1A  H 0 1 N N N N N N -61.052 28.614 42.116 1.883  -0.242 1.020  H1A  LE3 12 
LE3 H2   H2   H 0 1 N N N N N N -62.651 26.042 42.259 0.467  1.750  0.604  H2   LE3 13 
LE3 H2A  H2A  H 0 1 N N N N N N -60.900 26.325 42.582 0.410  1.349  -1.129 H2A  LE3 14 
LE3 H3   H3   H 0 1 N N N N N N -61.688 27.753 44.580 -0.663 -0.821 -0.591 H3   LE3 15 
LE3 H3A  H3A  H 0 1 N N N N N N -63.297 26.979 44.332 -0.606 -0.419 1.142  H3A  LE3 16 
LE3 H4   H4   H 0 1 N N N N N N -60.668 25.501 44.773 -2.023 1.573  0.727  H4   LE3 17 
LE3 H4A  H4A  H 0 1 N N N N N N -61.922 25.819 46.038 -2.079 1.171  -1.006 H4A  LE3 18 
LE3 H5B  H5B  H 0 1 N N N N N N -62.992 22.790 46.433 -4.845 1.126  -0.905 H5B  LE3 19 
LE3 H5BA H5BA H 0 0 N N N N N N -61.664 22.135 45.416 -5.747 0.137  0.268  H5BA LE3 20 
LE3 H5BB H5BB H 0 0 N N N N N N -61.376 23.573 46.455 -4.788 1.528  0.828  H5BB LE3 21 
LE3 H12  H12  H 0 1 N Y N N N N -64.734 30.032 41.822 5.021  1.283  -0.351 H12  LE3 22 
LE3 H13  H13  H 0 1 N N N N N N -63.313 28.898 43.554 2.762  2.007  -0.445 H13  LE3 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LE3 C   N    SING N N 1  
LE3 S   C    DOUB N N 2  
LE3 C1  N    SING N N 3  
LE3 C1  C2   SING N N 4  
LE3 C1  H1   SING N N 5  
LE3 C1  H1A  SING N N 6  
LE3 C2  C3   SING N N 7  
LE3 C2  H2   SING N N 8  
LE3 C2  H2A  SING N N 9  
LE3 C3  C4   SING N N 10 
LE3 C3  H3   SING N N 11 
LE3 C3  H3A  SING N N 12 
LE3 C4  H4   SING N N 13 
LE3 C4  H4A  SING N N 14 
LE3 S5  C4   SING N N 15 
LE3 S5  O5A  DOUB N N 16 
LE3 S5  C5B  SING N N 17 
LE3 C5B H5B  SING N N 18 
LE3 C5B H5BA SING N N 19 
LE3 C5B H5BB SING N N 20 
LE3 C   H12  SING N N 21 
LE3 N   H13  SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LE3 SMILES           ACDLabs              12.01 "O=S(CCCCNC=S)C"                                                            
LE3 InChI            InChI                1.03  "InChI=1S/C6H13NOS2/c1-10(8)5-3-2-4-7-6-9/h6H,2-5H2,1H3,(H,7,9)/t10-/m1/s1" 
LE3 InChIKey         InChI                1.03  ZWRKPZDQBQKJAE-SNVBAGLBSA-N                                                 
LE3 SMILES_CANONICAL CACTVS               3.370 "C[S@@](=O)CCCCNC=S"                                                        
LE3 SMILES           CACTVS               3.370 "C[S](=O)CCCCNC=S"                                                          
LE3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[S@@](=O)CCCCNC=S"                                                        
LE3 SMILES           "OpenEye OEToolkits" 1.7.2 "CS(=O)CCCCNC=S"                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LE3 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{4-[(R)-methylsulfinyl]butyl}thioformamide"    
LE3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[4-[(R)-methylsulfinyl]butyl]methanethioamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LE3 "Create component"         2011-07-08 RCSB 
LE3 "Other modification"       2011-10-05 RCSB 
LE3 "Modify leaving atom flag" 2011-10-27 RCSB 
LE3 "Initial release"          2012-09-28 RCSB 
LE3 "Modify synonyms"          2020-06-05 PDBE 
LE3 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LE3 
_pdbx_chem_comp_synonyms.name         "L-Sulforaphane, bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LE3 
_pdbx_chem_comp_pcm.modified_residue_id                PRO 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
