data_MA3
#

_chem_comp.id                                   MA3
_chem_comp.name                                 "methyl 4-thio-alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE; methyl 4-thio-alpha-D-glucoside; methyl 4-thio-D-glucoside; methyl
4-thio-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       210.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MA3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1JFH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  MA3  O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE    PDB  ?  
2  MA3  "methyl 4-thio-alpha-D-glucoside"           PDB  ?  
3  MA3  "methyl 4-thio-D-glucoside"                 PDB  ?  
4  MA3  "methyl 4-thio-glucoside"                   PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MA3  C1   C1   C  0  1  N  N  S  -2.560  43.097  18.885   1.503   0.411   0.796  C1   MA3   1  
MA3  C2   C2   C  0  1  N  N  R  -3.019  41.678  18.508   0.336   0.644   1.759  C2   MA3   2  
MA3  C3   C3   C  0  1  N  N  R  -4.538  41.607  18.343  -0.898  -0.094   1.236  C3   MA3   3  
MA3  C4   C4   C  0  1  N  N  S  -5.245  42.152  19.586  -1.152   0.340  -0.211  C4   MA3   4  
MA3  C5   C5   C  0  1  N  N  R  -4.704  43.557  19.875   0.126   0.130  -1.026  C5   MA3   5  
MA3  C6   C6   C  0  1  N  N  N  -5.277  44.209  21.120  -0.127   0.531  -2.480  C6   MA3   6  
MA3  C7   C7   C  0  1  N  N  N  -2.554  45.392  18.099   2.855  -1.143  -0.213  C7   MA3   7  
MA3  O1   O1   O  0  1  N  N  N  -2.846  43.998  17.815   1.760  -0.990   0.691  O1   MA3   8  
MA3  O2   O2   O  0  1  N  N  N  -2.392  41.253  17.306   0.678   0.146   3.054  O2   MA3   9  
MA3  O3   O3   O  0  1  N  N  N  -4.934  40.260  18.123  -2.033   0.233   2.040  O3   MA3  10  
MA3  S4   S4   S  0  1  N  N  N  -7.059  42.161  19.318  -2.493  -0.654  -0.920  S4   MA3  11  
MA3  O5   O5   O  0  1  N  N  N  -3.275  43.509  20.041   1.177   0.931  -0.490  O5   MA3  12  
MA3  O6   O6   O  0  1  N  N  N  -4.918  43.496  22.290   1.062   0.329  -3.245  O6   MA3  13  
MA3  H1   H1   H  0  1  N  N  N  -1.462  43.098  19.082   2.392   0.914   1.176  H1   MA3  14  
MA3  H2   H2   H  0  1  N  N  N  -2.721  40.999  19.341   0.124   1.711   1.823  H2   MA3  15  
MA3  H3   H3   H  0  1  N  N  N  -4.827  42.231  17.466  -0.724  -1.169   1.270  H3   MA3  16  
MA3  H4   H4   H  0  1  N  N  N  -5.044  41.502  20.470  -1.429   1.394  -0.232  H4   MA3  17  
MA3  H5   H5   H  0  1  N  N  N  -5.012  44.169  18.995   0.413  -0.920  -0.984  H5   MA3  18  
MA3  H61  H61  H  0  1  N  N  N  -4.984  45.282  21.190  -0.931  -0.080  -2.891  H61  MA3  19  
MA3  H62  H62  H  0  1  N  N  N  -6.382  44.336  21.042  -0.413   1.582  -2.523  H62  MA3  20  
MA3  H71  H71  H  0  1  N  N  N  -2.777  46.095  17.263   3.088  -2.202  -0.325  H71  MA3  21  
MA3  H72  H72  H  0  1  N  N  N  -3.079  45.715  19.027   2.586  -0.725  -1.183  H72  MA3  22  
MA3  H73  H73  H  0  1  N  N  N  -1.494  45.505  18.427   3.726  -0.619   0.179  H73  MA3  23  
MA3  HO2  HO2  H  0  1  N  Y  N  -2.675  40.376  17.073   1.459   0.636   3.345  HO2  MA3  24  
MA3  HO3  HO3  H  0  1  N  Y  N  -5.877  40.215  18.020  -1.831  -0.057   2.940  HO3  MA3  25  
MA3  HS4  HS4  H  0  1  N  N  N  -7.497  42.499  20.089  -3.492  -0.331  -0.079  HS4  MA3  26  
MA3  HO6  HO6  H  0  1  N  Y  N  -5.276  43.904  23.069   0.859   0.592  -4.153  HO6  MA3  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MA3  C1  C2   SING  N  N   1  
MA3  C1  O1   SING  N  N   2  
MA3  C1  O5   SING  N  N   3  
MA3  C1  H1   SING  N  N   4  
MA3  C2  C3   SING  N  N   5  
MA3  C2  O2   SING  N  N   6  
MA3  C2  H2   SING  N  N   7  
MA3  C3  C4   SING  N  N   8  
MA3  C3  O3   SING  N  N   9  
MA3  C3  H3   SING  N  N  10  
MA3  C4  C5   SING  N  N  11  
MA3  C4  S4   SING  N  N  12  
MA3  C4  H4   SING  N  N  13  
MA3  C5  C6   SING  N  N  14  
MA3  C5  O5   SING  N  N  15  
MA3  C5  H5   SING  N  N  16  
MA3  C6  O6   SING  N  N  17  
MA3  C6  H61  SING  N  N  18  
MA3  C6  H62  SING  N  N  19  
MA3  C7  O1   SING  N  N  20  
MA3  C7  H71  SING  N  N  21  
MA3  C7  H72  SING  N  N  22  
MA3  C7  H73  SING  N  N  23  
MA3  O2  HO2  SING  N  N  24  
MA3  O3  HO3  SING  N  N  25  
MA3  S4  HS4  SING  N  N  26  
MA3  O6  HO6  SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MA3  SMILES            ACDLabs               10.04  "OC1C(O)C(S)C(OC1OC)CO"  
MA3  SMILES_CANONICAL  CACTVS                3.341  "CO[C@H]1O[C@H](CO)[C@@H](S)[C@H](O)[C@H]1O"  
MA3  SMILES            CACTVS                3.341  "CO[CH]1O[CH](CO)[CH](S)[CH](O)[CH]1O"  
MA3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)S)O)O"  
MA3  SMILES            "OpenEye OEToolkits"  1.5.0  "COC1C(C(C(C(O1)CO)S)O)O"  
MA3  InChI             InChI                 1.03   "InChI=1S/C7H14O5S/c1-11-7-5(10)4(9)6(13)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5-,6-,7+/m1/s1"  
MA3  InChIKey          InChI                 1.03   PFROTWRHYMLGHR-GKHCUFPYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MA3  "SYSTEMATIC NAME"            ACDLabs               10.04  "methyl 4-thio-alpha-D-glucopyranoside"  
MA3  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-2-methoxy-5-sulfanyl-oxane-3,4-diol"  
MA3  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    O1-methyl-4-deoxy-4-thio-a-D-glucose  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
MA3  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
MA3  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
MA3  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
MA3  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MA3  "Create component"          1999-07-08  EBI   
MA3  "Modify descriptor"         2011-06-04  RCSB  
MA3  "Other modification"        2020-07-03  RCSB  
MA3  "Modify name"               2020-07-17  RCSB  
MA3  "Modify synonyms"           2020-07-17  RCSB  
MA3  "Modify linking type"       2020-07-17  RCSB  
MA3  "Modify leaving atom flag"  2020-07-17  RCSB  
##
