data_NG3
#

_chem_comp.id                                   NG3
_chem_comp.name                                 "3'-amino-2',3'-dideoxyguanosine 5'-(tetrahydrogen triphosphate)"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H17 N6 O12 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3'-amino-dGTP"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-25
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       506.196
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NG3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UR9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NG3  C2     C1   C  0  1  N  N  N  -16.858  -12.955  -11.953  -7.415   1.631   1.109  C2     NG3   1  
NG3  C4     C2   C  0  1  Y  N  N  -18.775  -14.511  -12.000  -5.525   0.618   0.097  C4     NG3   2  
NG3  C5     C3   C  0  1  Y  N  N  -19.207  -13.798  -13.236  -6.104   0.823  -1.149  C5     NG3   3  
NG3  C6     C4   C  0  1  N  N  N  -18.445  -12.885  -13.556  -7.419   1.471  -1.203  C6     NG3   4  
NG3  C8     C5   C  0  1  Y  N  N  -20.802  -15.463  -12.851  -4.199  -0.150  -1.478  C8     NG3   5  
NG3  "C1'"  C6   C  0  1  N  N  R  -19.825  -16.392  -10.826  -3.363  -0.408   0.889  "C1'"  NG3   6  
NG3  "C2'"  C7   C  0  1  N  N  N  -20.518  -15.668   -9.674  -3.737  -1.802   1.430  "C2'"  NG3   7  
NG3  "C3'"  C8   C  0  1  N  N  S  -21.859  -16.329   -9.633  -2.488  -2.669   1.140  "C3'"  NG3   8  
NG3  "C4'"  C9   C  0  1  N  N  S  -21.579  -17.723  -10.090  -1.379  -1.598   0.980  "C4'"  NG3   9  
NG3  "C5'"  C10  C  0  1  N  N  N  -22.842  -18.261  -10.748  -0.230  -2.136   0.125  "C5'"  NG3  10  
NG3  N1     N1   N  0  1  N  N  N  -17.444  -12.501  -13.031  -8.000   1.839  -0.051  N1     NG3  11  
NG3  O6     O1   O  0  1  N  N  N  -18.819  -12.185  -14.713  -7.970   1.674  -2.273  O6     NG3  12  
NG3  "O4'"  O2   O  0  1  N  N  N  -20.559  -17.595  -11.057  -2.052  -0.513   0.308  "O4'"  NG3  13  
NG3  N2     N2   N  0  1  N  N  N  -15.634  -12.419  -11.398  -8.057   2.029   2.251  N2     NG3  14  
NG3  N3     N3   N  0  1  N  N  N  -17.562  -14.074  -11.342  -6.201   1.031   1.217  N3     NG3  15  
NG3  "N3'"  N4   N  0  1  N  N  N  -22.433  -16.331   -8.279  -2.196  -3.563   2.269  "N3'"  NG3  16  
NG3  N7     N5   N  0  1  Y  N  N  -20.346  -14.507  -13.520  -5.249   0.334  -2.077  N7     NG3  17  
NG3  N9     N6   N  0  1  Y  N  N  -19.837  -15.483  -11.925  -4.331   0.007  -0.130  N9     NG3  18  
NG3  O1A    O3   O  0  1  N  N  N  -25.508  -17.927  -12.216   1.885  -1.487  -2.296  O1A    NG3  19  
NG3  O1B    O4   O  0  1  N  N  N  -25.719  -14.251   -9.644   5.050   0.423  -2.205  O1B    NG3  20  
NG3  O1G    O5   O  0  1  N  N  N  -28.649  -16.830  -11.769   6.635   3.210   1.388  O1G    NG3  21  
NG3  O2A    O6   O  0  1  N  N  N  -24.494  -16.681  -13.824   2.822  -2.679  -0.279  O2A    NG3  22  
NG3  O2B    O7   O  0  1  N  N  N  -26.477  -16.391   -9.912   5.517  -1.207  -0.335  O2B    NG3  23  
NG3  O2G    O8   O  0  1  N  N  N  -29.548  -14.929  -10.812   7.344   0.723   1.861  O2G    NG3  24  
NG3  O3A    O9   O  0  1  N  N  N  -24.610  -15.608  -11.497   3.209  -0.190  -0.431  O3A    NG3  25  
NG3  O3B    O10  O  0  1  N  N  N  -27.122  -14.710  -11.739   5.302   1.230   0.284  O3B    NG3  26  
NG3  O3G    O11  O  0  1  N  N  N  -29.287  -15.063  -13.110   7.667   1.773  -0.412  O3G    NG3  27  
NG3  "O5'"  O12  O  0  1  N  N  N  -22.969  -17.634  -11.986   0.828  -1.176   0.091  "O5'"  NG3  28  
NG3  PA     P1   P  0  1  N  N  N  -24.411  -16.973  -12.394   2.200  -1.411  -0.719  PA     NG3  29  
NG3  PB     P2   P  0  1  N  N  N  -25.986  -15.247  -10.678   4.786   0.037  -0.665  PB     NG3  30  
NG3  PG     P3   P  0  1  N  N  N  -28.626  -15.372  -11.853   6.757   1.735   0.754  PG     NG3  31  
NG3  H1     H1   H  0  1  N  N  N  -21.685  -16.072  -12.980  -3.354  -0.605  -1.973  H1     NG3  32  
NG3  H2     H2   H  0  1  N  N  N  -18.791  -16.625  -10.532  -3.350   0.315   1.704  H2     NG3  33  
NG3  H3     H3   H  0  1  N  N  N  -19.974  -15.814   -8.729  -3.928  -1.756   2.502  H3     NG3  34  
NG3  H4     H4   H  0  1  N  N  N  -20.612  -14.592   -9.881  -4.606  -2.195   0.903  H4     NG3  35  
NG3  H5     H5   H  0  1  N  N  N  -22.543  -15.833  -10.337  -2.615  -3.238   0.219  H5     NG3  36  
NG3  H6     H6   H  0  1  N  N  N  -21.278  -18.362   -9.247  -1.012  -1.277   1.956  H6     NG3  37  
NG3  H7     H7   H  0  1  N  N  N  -23.717  -18.035  -10.121   0.139  -3.067   0.556  H7     NG3  38  
NG3  H8     H8   H  0  1  N  N  N  -22.760  -19.349  -10.885  -0.586  -2.320  -0.888  H8     NG3  39  
NG3  H9     H9   H  0  1  N  N  N  -15.178  -11.649  -11.844  -7.644   1.881   3.116  H9     NG3  40  
NG3  H10    H10  H  0  1  N  N  N  -15.244  -12.819  -10.569  -8.924   2.459   2.195  H10    NG3  41  
NG3  H11    H11  H  0  1  N  N  N  -17.225  -14.517  -10.511  -5.808   0.895   2.093  H11    NG3  42  
NG3  H12    H12  H  0  1  N  N  N  -22.613  -15.390   -7.991  -2.961  -4.199   2.433  H12    NG3  43  
NG3  H13    H13  H  0  1  N  N  N  -23.289  -16.849   -8.281  -1.334  -4.065   2.119  H13    NG3  44  
NG3  H15    H15  H  0  1  N  N  N  -25.939  -18.074  -13.050   1.475  -0.687  -2.655  H15    NG3  45  
NG3  H16    H16  H  0  1  N  N  N  -25.932  -14.613   -8.792   4.601   1.230  -2.491  H16    NG3  46  
NG3  H17    H17  H  0  1  N  N  N  -29.079  -17.185  -12.538   7.475   3.578   1.693  H17    NG3  47  
NG3  H18    H18  H  0  1  N  N  N  -30.326  -14.561  -11.213   6.798   0.648   2.655  H18    NG3  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NG3  O6     C6     DOUB  N  N   1  
NG3  O2A    PA     DOUB  N  N   2  
NG3  C6     C5     SING  N  N   3  
NG3  C6     N1     SING  N  N   4  
NG3  N7     C5     SING  Y  N   5  
NG3  N7     C8     DOUB  Y  N   6  
NG3  C5     C4     DOUB  Y  N   7  
NG3  O3G    PG     DOUB  N  N   8  
NG3  N1     C2     DOUB  N  N   9  
NG3  C8     N9     SING  Y  N  10  
NG3  PA     O1A    SING  N  N  11  
NG3  PA     "O5'"  SING  N  N  12  
NG3  PA     O3A    SING  N  N  13  
NG3  C4     N9     SING  Y  N  14  
NG3  C4     N3     SING  N  N  15  
NG3  "O5'"  "C5'"  SING  N  N  16  
NG3  C2     N2     SING  N  N  17  
NG3  C2     N3     SING  N  N  18  
NG3  N9     "C1'"  SING  N  N  19  
NG3  PG     O1G    SING  N  N  20  
NG3  PG     O3B    SING  N  N  21  
NG3  PG     O2G    SING  N  N  22  
NG3  O3B    PB     SING  N  N  23  
NG3  O3A    PB     SING  N  N  24  
NG3  "O4'"  "C1'"  SING  N  N  25  
NG3  "O4'"  "C4'"  SING  N  N  26  
NG3  "C1'"  "C2'"  SING  N  N  27  
NG3  "C5'"  "C4'"  SING  N  N  28  
NG3  PB     O2B    DOUB  N  N  29  
NG3  PB     O1B    SING  N  N  30  
NG3  "C4'"  "C3'"  SING  N  N  31  
NG3  "C2'"  "C3'"  SING  N  N  32  
NG3  "C3'"  "N3'"  SING  N  N  33  
NG3  C8     H1     SING  N  N  34  
NG3  "C1'"  H2     SING  N  N  35  
NG3  "C2'"  H3     SING  N  N  36  
NG3  "C2'"  H4     SING  N  N  37  
NG3  "C3'"  H5     SING  N  N  38  
NG3  "C4'"  H6     SING  N  N  39  
NG3  "C5'"  H7     SING  N  N  40  
NG3  "C5'"  H8     SING  N  N  41  
NG3  N2     H9     SING  N  N  42  
NG3  N2     H10    SING  N  N  43  
NG3  N3     H11    SING  N  N  44  
NG3  "N3'"  H12    SING  N  N  45  
NG3  "N3'"  H13    SING  N  N  46  
NG3  O1A    H15    SING  N  N  47  
NG3  O1B    H16    SING  N  N  48  
NG3  O1G    H17    SING  N  N  49  
NG3  O2G    H18    SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NG3  SMILES            ACDLabs               12.01  "C=2(N)Nc1n(cnc1C(N=2)=O)C3CC(N)C(COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O3"  
NG3  InChI             InChI                 1.03   "InChI=1S/C10H17N6O12P3/c11-4-1-6(16-3-13-7-8(16)14-10(12)15-9(7)17)26-5(4)2-25-30(21,22)28-31(23,24)27-29(18,19)20/h3-6H,1-2,11H2,(H,21,22)(H,23,24)(H2,18,19,20)(H3,12,14,15,17)/t4-,5+,6+/m0/s1"  
NG3  InChIKey          InChI                 1.03   ILTYANYMUGEMNF-KVQBGUIXSA-N  
NG3  SMILES_CANONICAL  CACTVS                3.385  "N[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=C(N)Nc23"  
NG3  SMILES            CACTVS                3.385  "N[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=C(N)Nc23"  
NG3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N)NC(=NC2=O)N"  
NG3  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N)NC(=NC2=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NG3  "SYSTEMATIC NAME"  ACDLabs               12.01  "3'-amino-2',3'-dideoxyguanosine 5'-(tetrahydrogen triphosphate)"  
NG3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[[(2~{S},3~{S},5~{R})-3-azanyl-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NG3  "Create component"  2019-10-25  RCSB  
NG3  "Initial release"   2020-03-18  RCSB  
NG3  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NG3
_pdbx_chem_comp_synonyms.name        "3'-amino-dGTP"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
