data_OS3
#

_chem_comp.id                                   OS3
_chem_comp.name                                 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(pent-4-yn-1-yl)sulfanyl]methyl}pyrrolidin-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H23 N5 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-07-03
_chem_comp.pdbx_modified_date                   2019-03-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       345.462
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OS3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DYV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OS3  N6   N1   N  0  1  N  N  N   4.640  -23.334  -38.586    7.497   0.055   0.065  N6   OS3   1  
OS3  C6   C1   C  0  1  Y  N  N   4.234  -22.086  -38.852    6.256   0.608  -0.205  C6   OS3   2  
OS3  N1   N2   N  0  1  Y  N  N   5.060  -21.115  -39.324    6.114   1.523  -1.159  N1   OS3   3  
OS3  C2   C2   C  0  1  Y  N  N   4.630  -19.852  -39.560    4.935   2.055  -1.431  C2   OS3   4  
OS3  N3   N3   N  0  1  Y  N  N   3.346  -19.484  -39.395    3.843   1.716  -0.782  N3   OS3   5  
OS3  C5   C3   C  0  1  Y  N  N   2.821  -21.772  -38.645    5.124   0.211   0.516  C5   OS3   6  
OS3  C4   C4   C  0  1  Y  N  N   2.460  -20.411  -38.945    3.891   0.804   0.193  C4   OS3   7  
OS3  N7   N4   N  0  1  Y  N  N   1.726  -22.438  -38.246    4.894  -0.682   1.536  N7   OS3   8  
OS3  C8   C5   C  0  1  Y  N  N   0.664  -21.567  -38.245    3.572  -0.672   1.870  C8   OS3   9  
OS3  C9   C6   C  0  1  Y  N  N   1.033  -20.298  -38.683    2.911   0.206   1.093  C9   OS3  10  
OS3  C10  C7   C  0  1  N  N  N   0.133  -19.079  -38.772    1.436   0.513   1.142  C10  OS3  11  
OS3  N1A  N5   N  0  1  N  N  N  -0.347  -18.572  -40.068    0.748  -0.216   0.068  N1A  OS3  12  
OS3  C2A  C8   C  0  1  N  N  N   0.680  -17.847  -40.860    0.732  -1.676   0.340  C2A  OS3  13  
OS3  C3A  C9   C  0  1  N  N  R   0.028  -17.828  -42.213   -0.429  -2.220  -0.519  C3A  OS3  14  
OS3  O3A  O1   O  0  1  N  N  N  -1.038  -16.855  -42.237    0.063  -2.704  -1.770  O3A  OS3  15  
OS3  C1A  C10  C  0  1  N  N  N  -0.952  -19.612  -40.943   -0.688   0.159   0.004  C1A  OS3  16  
OS3  C4A  C11  C  0  1  N  N  S  -0.498  -19.246  -42.362   -1.363  -1.012  -0.740  C4A  OS3  17  
OS3  C5A  C12  C  0  1  N  N  N   0.554  -20.253  -42.843   -2.745  -1.294  -0.146  C5A  OS3  18  
OS3  S5A  S1   S  0  1  N  N  N   1.008  -20.078  -44.556   -3.866   0.075  -0.546  S5A  OS3  19  
OS3  C20  C13  C  0  1  N  N  N  -0.285  -20.949  -45.371   -5.424  -0.433   0.230  C20  OS3  20  
OS3  C21  C14  C  0  1  N  N  N   0.076  -21.193  -46.826   -6.491   0.635  -0.021  C21  OS3  21  
OS3  C22  C15  C  0  1  N  N  N  -0.892  -22.219  -47.414   -7.806   0.206   0.633  C22  OS3  22  
OS3  C23  C16  C  0  1  N  N  N  -2.195  -21.595  -47.642   -8.832   1.233   0.392  C23  OS3  23  
OS3  C24  C17  C  0  1  N  N  N  -3.292  -20.987  -47.887   -9.651   2.053   0.199  C24  OS3  24  
OS3  H1   H1   H  0  1  N  N  N   5.616  -23.418  -38.788    7.589  -0.615   0.761  H1   OS3  25  
OS3  H2   H2   H  0  1  N  N  N   4.481  -23.537  -37.620    8.274   0.335  -0.444  H2   OS3  26  
OS3  H3   H3   H  0  1  N  N  N   5.344  -19.113  -39.893    4.867   2.796  -2.214  H3   OS3  27  
OS3  H4   H4   H  0  1  N  N  N   1.690  -23.405  -37.992    5.571  -1.237   1.954  H4   OS3  28  
OS3  H5   H5   H  0  1  N  N  N  -0.337  -21.834  -37.941    3.122  -1.280   2.640  H5   OS3  29  
OS3  H6   H6   H  0  1  N  N  N   0.683  -18.252  -38.299    1.033   0.204   2.106  H6   OS3  30  
OS3  H7   H7   H  0  1  N  N  N  -0.763  -19.311  -38.178    1.283   1.584   1.010  H7   OS3  31  
OS3  H9   H9   H  0  1  N  N  N   1.636  -18.391  -40.879    1.675  -2.130   0.036  H9   OS3  32  
OS3  H10  H10  H  0  1  N  N  N   0.845  -16.830  -40.475    0.545  -1.863   1.398  H10  OS3  33  
OS3  H11  H11  H  0  1  N  N  N   0.774  -17.619  -42.993   -0.955  -3.013   0.013  H11  OS3  34  
OS3  H12  H12  H  0  1  N  N  N  -0.674  -15.983  -42.142    0.690  -3.436  -1.689  H12  OS3  35  
OS3  H13  H13  H  0  1  N  N  N  -2.049  -19.589  -40.870   -1.099   0.259   1.009  H13  OS3  36  
OS3  H14  H14  H  0  1  N  N  N  -0.587  -20.612  -40.665   -0.814   1.088  -0.551  H14  OS3  37  
OS3  H15  H15  H  0  1  N  N  N  -1.362  -19.256  -43.043   -1.447  -0.788  -1.803  H15  OS3  38  
OS3  H16  H16  H  0  1  N  N  N   0.153  -21.267  -42.695   -3.139  -2.220  -0.564  H16  OS3  39  
OS3  H17  H17  H  0  1  N  N  N   1.459  -20.124  -42.232   -2.662  -1.390   0.937  H17  OS3  40  
OS3  H18  H18  H  0  1  N  N  N  -1.209  -20.355  -45.322   -5.751  -1.381  -0.198  H18  OS3  41  
OS3  H19  H19  H  0  1  N  N  N  -0.443  -21.915  -44.870   -5.274  -0.551   1.303  H19  OS3  42  
OS3  H20  H20  H  0  1  N  N  N   1.105  -21.577  -46.891   -6.164   1.583   0.407  H20  OS3  43  
OS3  H21  H21  H  0  1  N  N  N   0.000  -20.250  -47.388   -6.641   0.753  -1.094  H21  OS3  44  
OS3  H22  H22  H  0  1  N  N  N  -1.006  -23.058  -46.712   -8.133  -0.742   0.206  H22  OS3  45  
OS3  H23  H23  H  0  1  N  N  N  -0.493  -22.592  -48.369   -7.656   0.088   1.707  H23  OS3  46  
OS3  H24  H24  H  0  1  N  N  N  -4.202  -20.483  -48.090  -10.383   2.785   0.027  H24  OS3  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OS3  C24  C23  TRIP  N  N   1  
OS3  C23  C22  SING  N  N   2  
OS3  C22  C21  SING  N  N   3  
OS3  C21  C20  SING  N  N   4  
OS3  C20  S5A  SING  N  N   5  
OS3  S5A  C5A  SING  N  N   6  
OS3  C5A  C4A  SING  N  N   7  
OS3  C4A  C3A  SING  N  N   8  
OS3  C4A  C1A  SING  N  N   9  
OS3  O3A  C3A  SING  N  N  10  
OS3  C3A  C2A  SING  N  N  11  
OS3  C1A  N1A  SING  N  N  12  
OS3  C2A  N1A  SING  N  N  13  
OS3  N1A  C10  SING  N  N  14  
OS3  C2   N3   DOUB  Y  N  15  
OS3  C2   N1   SING  Y  N  16  
OS3  N3   C4   SING  Y  N  17  
OS3  N1   C6   DOUB  Y  N  18  
OS3  C4   C9   SING  Y  N  19  
OS3  C4   C5   DOUB  Y  N  20  
OS3  C6   C5   SING  Y  N  21  
OS3  C6   N6   SING  N  N  22  
OS3  C10  C9   SING  N  N  23  
OS3  C9   C8   DOUB  Y  N  24  
OS3  C5   N7   SING  Y  N  25  
OS3  N7   C8   SING  Y  N  26  
OS3  N6   H1   SING  N  N  27  
OS3  N6   H2   SING  N  N  28  
OS3  C2   H3   SING  N  N  29  
OS3  N7   H4   SING  N  N  30  
OS3  C8   H5   SING  N  N  31  
OS3  C10  H6   SING  N  N  32  
OS3  C10  H7   SING  N  N  33  
OS3  C2A  H9   SING  N  N  34  
OS3  C2A  H10  SING  N  N  35  
OS3  C3A  H11  SING  N  N  36  
OS3  O3A  H12  SING  N  N  37  
OS3  C1A  H13  SING  N  N  38  
OS3  C1A  H14  SING  N  N  39  
OS3  C4A  H15  SING  N  N  40  
OS3  C5A  H16  SING  N  N  41  
OS3  C5A  H17  SING  N  N  42  
OS3  C20  H18  SING  N  N  43  
OS3  C20  H19  SING  N  N  44  
OS3  C21  H20  SING  N  N  45  
OS3  C21  H21  SING  N  N  46  
OS3  C22  H22  SING  N  N  47  
OS3  C22  H23  SING  N  N  48  
OS3  C24  H24  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OS3  SMILES            ACDLabs               12.01  "Nc1c2ncc(c2ncn1)CN3CC(O)C(C3)CSCCCC#C"  
OS3  InChI             InChI                 1.03   "InChI=1S/C17H23N5OS/c1-2-3-4-5-24-10-13-8-22(9-14(13)23)7-12-6-19-16-15(12)20-11-21-17(16)18/h1,6,11,13-14,19,23H,3-5,7-10H2,(H2,18,20,21)/t13-,14+/m1/s1"  
OS3  InChIKey          InChI                 1.03   QRFSYYUFBJRRLL-KGLIPLIRSA-N  
OS3  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CSCCCC#C)C3)c[nH]c12"  
OS3  SMILES            CACTVS                3.385  "Nc1ncnc2c(CN3C[CH](O)[CH](CSCCCC#C)C3)c[nH]c12"  
OS3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C#CCCCSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c2ncnc3N"  
OS3  SMILES            "OpenEye OEToolkits"  2.0.6  "C#CCCCSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OS3  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(pent-4-yn-1-yl)sulfanyl]methyl}pyrrolidin-3-ol"  
OS3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{R},4~{S})-1-[(4-azanyl-5~{H}-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-(pent-4-ynylsulfanylmethyl)pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OS3  "Create component"  2018-07-03  RCSB  
OS3  "Initial release"   2019-03-20  RCSB  
##
