data_PB3
#

_chem_comp.id                                   PB3
_chem_comp.name                                 "N,N'-BIS(3-METHYLBENZYL)PYRIMIDINE-4,6-DICARBOXAMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H22 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PYRIMIDINE-4,6-DICARBOXYLIC ACID BIS-(3-METHYL-BENZYLAMIDE)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-10-28
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       374.436
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PB3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XUC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PB3  C1    C1    C  0  1  Y  N  N  -11.643  27.426  44.933  -0.558  -0.065  -1.196  C1    PB3   1  
PB3  C2    C2    C  0  1  Y  N  N  -11.092  28.001  46.071  -1.276  -0.001   0.000  C2    PB3   2  
PB3  C3    C3    C  0  1  Y  N  N   -9.715  28.043  46.181  -0.559   0.064   1.196  C3    PB3   3  
PB3  N6    N6    N  0  1  Y  N  N  -10.815  26.898  43.919   0.770  -0.062  -1.150  N6    PB3   4  
PB3  C7    C7    C  0  1  N  N  N   -5.912  27.986  53.638   1.632  -2.053   8.287  C7    PB3   5  
PB3  C8    C8    C  0  1  N  N  N  -18.263  22.235  44.158   1.631   2.056  -8.285  C8    PB3   6  
PB3  C9    C9    C  0  1  N  N  N   -9.128  28.628  47.375  -1.268   0.134   2.498  C9    PB3   7  
PB3  C11   C11   C  0  1  N  N  N   -7.011  28.805  48.723  -1.265   0.267   4.931  C11   PB3   8  
PB3  C12   C12   C  0  1  Y  N  N   -7.196  27.992  50.001  -0.257   0.329   6.050  C12   PB3   9  
PB3  C15   C15   C  0  1  N  N  N  -13.100  27.364  44.816  -1.267  -0.137  -2.498  C15   PB3  10  
PB3  C21   C21   C  0  1  Y  N  N  -16.637  24.209  43.964   0.200   0.837  -6.631  C21   PB3  11  
PB3  C24   C24   C  0  1  Y  N  N  -15.714  23.701  46.665   1.132  -1.607  -7.523  C24   PB3  12  
PB3  C30   C30   C  0  1  Y  N  N   -8.085  26.842  50.053   0.204   1.552   6.497  C30   PB3  13  
PB3  C31   C31   C  0  1  Y  N  N   -8.266  26.083  51.244   1.128   1.609   7.524  C31   PB3  14  
PB3  C32   C32   C  0  1  Y  N  N   -7.553  26.460  52.416   1.591   0.442   8.103  C32   PB3  15  
PB3  C34   C34   C  0  1  Y  N  N   -6.488  28.357  51.185   0.208  -0.838   6.626  C34   PB3  16  
PB3  N4    N4    N  0  1  Y  N  N   -8.878  27.515  45.168   0.769   0.068   1.150  N4    PB3  17  
PB3  C5    C5    C  0  1  Y  N  N   -9.425  26.936  44.018   1.407   0.001   0.000  C5    PB3  18  
PB3  N10   N10   N  0  1  N  N  N   -7.793  28.332  47.545  -0.565   0.197   3.646  N10   PB3  19  
PB3  N16   N16   N  0  1  N  N  N  -13.595  26.419  43.918  -0.564  -0.199  -3.646  N16   PB3  20  
PB3  C17   C17   C  0  1  N  N  N  -15.044  26.194  43.685  -1.264  -0.270  -4.931  C17   PB3  21  
PB3  C18   C18   C  0  1  Y  N  N  -15.623  25.046  44.522  -0.256  -0.330  -6.049  C18   PB3  22  
PB3  C4    C4    C  0  1  Y  N  N  -17.178  23.132  44.756   1.128   0.783  -7.654  C4    PB3  23  
PB3  C23   C23   C  0  1  Y  N  N  -16.726  22.874  46.094   1.593  -0.439  -8.102  C23   PB3  24  
PB3  C25   C25   C  0  1  Y  N  N  -15.173  24.774  45.881   0.207  -1.552  -6.497  C25   PB3  25  
PB3  C6    C6    C  0  1  Y  N  N   -6.675  27.587  52.375   1.128  -0.781   7.655  C6    PB3  26  
PB3  O41   O41   O  0  1  N  N  N  -13.918  28.048  45.454  -2.482  -0.140  -2.529  O41   PB3  27  
PB3  O42   O42   O  0  1  N  N  N   -9.700  29.307  48.230  -2.482   0.135   2.529  O42   PB3  28  
PB3  H2    H2    H  0  1  N  N  N  -11.732  28.414  46.868  -2.356  -0.002   0.000  H2    PB3  29  
PB3  H71   1H7   H  0  1  N  N  N   -5.341  27.101  54.005   0.990  -2.322   9.125  H71   PB3  30  
PB3  H72   2H7   H  0  1  N  N  N   -5.227  28.865  53.606   1.620  -2.855   7.548  H72   PB3  31  
PB3  H73   3H7   H  0  1  N  N  N   -6.644  28.133  54.466   2.651  -1.903   8.643  H73   PB3  32  
PB3  H81   1H8   H  0  1  N  N  N  -17.889  21.817  43.194   0.989   2.324  -9.124  H81   PB3  33  
PB3  H82   2H8   H  0  1  N  N  N  -18.681  21.402  44.770   1.617   2.857  -7.546  H82   PB3  34  
PB3  H83   3H8   H  0  1  N  N  N  -19.104  22.877  43.807   2.651   1.907  -8.640  H83   PB3  35  
PB3  H111  1H11  H  0  0  N  N  N   -5.928  28.868  48.463  -1.889  -0.617   5.053  H111  PB3  36  
PB3  H112  2H11  H  0  0  N  N  N   -7.229  29.881  48.919  -1.890   1.159   4.956  H112  PB3  37  
PB3  H21   H21   H  0  1  N  N  N  -16.997  24.392  42.937  -0.162   1.793  -6.282  H21   PB3  38  
PB3  H24   H24   H  0  1  N  N  N  -15.357  23.515  47.692   1.495  -2.562  -7.872  H24   PB3  39  
PB3  H30   H30   H  0  1  N  N  N   -8.644  26.533  49.154  -0.157   2.464   6.046  H30   PB3  40  
PB3  H31   H31   H  0  1  N  N  N   -8.948  25.216  51.259   1.489   2.565   7.874  H31   PB3  41  
PB3  H32   H32   H  0  1  N  N  N   -7.680  25.884  53.348   2.313   0.486   8.905  H32   PB3  42  
PB3  H34   H34   H  0  1  N  N  N   -5.805  29.223  51.180  -0.152  -1.794   6.276  H34   PB3  43  
PB3  H5    H5    H  0  1  N  N  N   -8.785  26.525  43.220   2.487   0.002   0.000  H5    PB3  44  
PB3  H10   H10   H  0  1  N  N  N   -7.385  27.765  46.802   0.404   0.197   3.621  H10   PB3  45  
PB3  H16   H16   H  0  1  N  N  N  -12.884  25.882  43.422   0.405  -0.196  -3.621  H16   PB3  46  
PB3  H171  1H17  H  0  0  N  N  N  -15.251  26.037  42.601  -1.890   0.613  -5.053  H171  PB3  47  
PB3  H172  2H17  H  0  0  N  N  N  -15.622  27.134  43.848  -1.888  -1.163  -4.956  H172  PB3  48  
PB3  H23   H23   H  0  1  N  N  N  -17.154  22.044  46.681   2.316  -0.482  -8.903  H23   PB3  49  
PB3  H25   H25   H  0  1  N  N  N  -14.391  25.406  46.335  -0.152  -2.465  -6.045  H25   PB3  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PB3  C1   C2    SING  Y  N   1  
PB3  C1   N6    DOUB  Y  N   2  
PB3  C1   C15   SING  N  N   3  
PB3  C2   C3    DOUB  Y  N   4  
PB3  C2   H2    SING  N  N   5  
PB3  C3   C9    SING  N  N   6  
PB3  C3   N4    SING  Y  N   7  
PB3  N6   C5    SING  Y  N   8  
PB3  C7   C6    SING  N  N   9  
PB3  C7   H71   SING  N  N  10  
PB3  C7   H72   SING  N  N  11  
PB3  C7   H73   SING  N  N  12  
PB3  C8   C4    SING  N  N  13  
PB3  C8   H81   SING  N  N  14  
PB3  C8   H82   SING  N  N  15  
PB3  C8   H83   SING  N  N  16  
PB3  C9   N10   SING  N  N  17  
PB3  C9   O42   DOUB  N  N  18  
PB3  C11  C12   SING  N  N  19  
PB3  C11  N10   SING  N  N  20  
PB3  C11  H111  SING  N  N  21  
PB3  C11  H112  SING  N  N  22  
PB3  C12  C30   DOUB  Y  N  23  
PB3  C12  C34   SING  Y  N  24  
PB3  C15  N16   SING  N  N  25  
PB3  C15  O41   DOUB  N  N  26  
PB3  C21  C18   SING  Y  N  27  
PB3  C21  C4    DOUB  Y  N  28  
PB3  C21  H21   SING  N  N  29  
PB3  C24  C23   DOUB  Y  N  30  
PB3  C24  C25   SING  Y  N  31  
PB3  C24  H24   SING  N  N  32  
PB3  C30  C31   SING  Y  N  33  
PB3  C30  H30   SING  N  N  34  
PB3  C31  C32   DOUB  Y  N  35  
PB3  C31  H31   SING  N  N  36  
PB3  C32  C6    SING  Y  N  37  
PB3  C32  H32   SING  N  N  38  
PB3  C34  C6    DOUB  Y  N  39  
PB3  C34  H34   SING  N  N  40  
PB3  N4   C5    DOUB  Y  N  41  
PB3  C5   H5    SING  N  N  42  
PB3  N10  H10   SING  N  N  43  
PB3  N16  C17   SING  N  N  44  
PB3  N16  H16   SING  N  N  45  
PB3  C17  C18   SING  N  N  46  
PB3  C17  H171  SING  N  N  47  
PB3  C17  H172  SING  N  N  48  
PB3  C18  C25   DOUB  Y  N  49  
PB3  C4   C23   SING  Y  N  50  
PB3  C23  H23   SING  N  N  51  
PB3  C25  H25   SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PB3  SMILES            ACDLabs               10.04  "O=C(c2ncnc(C(=O)NCc1cccc(c1)C)c2)NCc3cccc(c3)C"  
PB3  SMILES_CANONICAL  CACTVS                3.341  "Cc1cccc(CNC(=O)c2cc(ncn2)C(=O)NCc3cccc(C)c3)c1"  
PB3  SMILES            CACTVS                3.341  "Cc1cccc(CNC(=O)c2cc(ncn2)C(=O)NCc3cccc(C)c3)c1"  
PB3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1cccc(c1)CNC(=O)c2cc(ncn2)C(=O)NCc3cccc(c3)C"  
PB3  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1cccc(c1)CNC(=O)c2cc(ncn2)C(=O)NCc3cccc(c3)C"  
PB3  InChI             InChI                 1.03   "InChI=1S/C22H22N4O2/c1-15-5-3-7-17(9-15)12-23-21(27)19-11-20(26-14-25-19)22(28)24-13-18-8-4-6-16(2)10-18/h3-11,14H,12-13H2,1-2H3,(H,23,27)(H,24,28)"  
PB3  InChIKey          InChI                 1.03   GTBUZLPQANSGGE-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PB3  "SYSTEMATIC NAME"  ACDLabs               10.04  "N,N'-bis(3-methylbenzyl)pyrimidine-4,6-dicarboxamide"  
PB3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N,N'-bis[(3-methylphenyl)methyl]pyrimidine-4,6-dicarboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PB3  "Create component"   2004-10-28  RCSB  
PB3  "Modify descriptor"  2011-06-04  RCSB  
PB3  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PB3
_pdbx_chem_comp_synonyms.name        "PYRIMIDINE-4,6-DICARBOXYLIC ACID BIS-(3-METHYL-BENZYLAMIDE)"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
