data_PD3
# 
_chem_comp.id                                    PD3 
_chem_comp.name                                  "1-{3-[(4-amino-1-cyclopentyl-1H-pyrazolo[3,4-d]pyrimidin-3-yl)methyl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H24 F3 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-06 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        495.500 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PD3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EL7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PD3 C4   C4   C 0 1 Y N N 22.639 -8.898  9.727  -5.073 0.899  -0.748 C4   PD3 1  
PD3 C5   C5   C 0 1 Y N N 22.553 -7.722  9.001  -4.987 -0.414 -0.244 C5   PD3 2  
PD3 C6   C6   C 0 1 Y N N 23.714 -7.158  8.499  -5.754 -1.418 -0.865 C6   PD3 3  
PD3 N1   N1   N 0 1 Y N N 24.883 -7.775  8.736  -6.522 -1.081 -1.895 N1   PD3 4  
PD3 N3   N3   N 0 1 Y N N 23.839 -9.461  9.928  -5.872 1.137  -1.787 N3   PD3 5  
PD3 CAQ  CAQ  C 0 1 N N N 21.120 -10.067 12.397 -2.496 3.384  -0.306 CAQ  PD3 6  
PD3 CAO  CAO  C 0 1 N N N 21.872 -11.271 12.973 -2.215 4.695  0.449  CAO  PD3 7  
PD3 CAP  CAP  C 0 1 N N N 21.633 -12.356 11.922 -3.563 5.162  1.038  CAP  PD3 8  
PD3 CAR  CAR  C 0 1 N N N 21.958 -11.546 10.667 -4.404 3.865  1.137  CAR  PD3 9  
PD3 CBH  CBH  C 0 1 N N N 21.021 -10.358 10.896 -4.004 3.100  -0.149 CBH  PD3 10 
PD3 NBI  NBI  N 0 1 Y N N 21.391 -9.188  10.086 -4.241 1.663  0.014  NBI  PD3 11 
PD3 NAV  NAV  N 0 1 Y N N 20.582 -8.353  9.674  -3.653 0.839  0.982  NAV  PD3 12 
PD3 C2   C2   C 0 1 Y N N 24.928 -8.895  9.436  -6.570 0.165  -2.333 C2   PD3 13 
PD3 NAA  NAA  N 0 1 N N N 23.670 -6.024  7.807  -5.709 -2.723 -0.414 NAA  PD3 14 
PD3 CBE  CBE  C 0 1 Y N N 21.199 -7.394  8.988  -4.082 -0.382 0.839  CBE  PD3 15 
PD3 CAS  CAS  C 0 1 N N N 20.563 -6.150  8.368  -3.680 -1.562 1.685  CAS  PD3 16 
PD3 CAZ  CAZ  C 0 1 Y N N 19.360 -6.527  7.500  -2.395 -2.146 1.155  CAZ  PD3 17 
PD3 CAM  CAM  C 0 1 Y N N 18.213 -5.745  7.497  -1.182 -1.686 1.629  CAM  PD3 18 
PD3 CAH  CAH  C 0 1 Y N N 19.432 -7.671  6.712  -2.433 -3.145 0.200  CAH  PD3 19 
PD3 CAF  CAF  C 0 1 Y N N 18.353 -8.039  5.917  -1.257 -3.683 -0.288 CAF  PD3 20 
PD3 CAI  CAI  C 0 1 Y N N 17.205 -7.255  5.922  -0.040 -3.225 0.177  CAI  PD3 21 
PD3 CBB  CBB  C 0 1 Y N N 17.124 -6.111  6.707  0.001  -2.225 1.140  CBB  PD3 22 
PD3 NAW  NAW  N 0 1 N N N 15.994 -5.415  6.638  1.232  -1.758 1.613  NAW  PD3 23 
PD3 CAY  CAY  C 0 1 N N N 15.694 -4.274  7.255  2.286  -1.670 0.778  CAY  PD3 24 
PD3 OAB  OAB  O 0 1 N N N 16.481 -3.681  7.991  2.192  -2.076 -0.364 OAB  PD3 25 
PD3 NAX  NAX  N 0 1 N N N 14.460 -3.853  6.996  3.445  -1.133 1.209  NAX  PD3 26 
PD3 CBC  CBC  C 0 1 Y N N 13.860 -2.748  7.430  4.508  -0.955 0.316  CBC  PD3 27 
PD3 CAN  CAN  C 0 1 Y N N 14.519 -1.754  8.145  5.339  0.152  0.435  CAN  PD3 28 
PD3 CAJ  CAJ  C 0 1 Y N N 12.541 -2.549  7.041  4.738  -1.888 -0.686 CAJ  PD3 29 
PD3 CAG  CAG  C 0 1 Y N N 11.873 -1.374  7.361  5.789  -1.709 -1.565 CAG  PD3 30 
PD3 CAK  CAK  C 0 1 Y N N 12.540 -0.385  8.073  6.611  -0.604 -1.447 CAK  PD3 31 
PD3 CBD  CBD  C 0 1 Y N N 13.861 -0.570  8.461  6.387  0.324  -0.447 CBD  PD3 32 
PD3 CBJ  CBJ  C 0 1 N N N 14.581 0.578   9.170  7.289  1.525  -0.319 CBJ  PD3 33 
PD3 FAD  FAD  F 0 1 N N N 15.670 0.137   9.789  8.359  1.217  0.528  FAD  PD3 34 
PD3 FAE  FAE  F 0 1 N N N 14.937 1.486   8.269  7.780  1.876  -1.581 FAE  PD3 35 
PD3 FAC  FAC  F 0 1 N N N 13.765 1.131   10.061 6.565  2.597  0.215  FAC  PD3 36 
PD3 HAQ  HAQ  H 0 1 N N N 21.666 -9.131  12.585 -2.245 3.499  -1.360 HAQ  PD3 37 
PD3 HAQA HAQA H 0 0 N N N 20.132 -9.933  12.861 -1.915 2.571  0.129  HAQA PD3 38 
PD3 HAO  HAO  H 0 1 N N N 22.943 -11.058 13.103 -1.499 4.518  1.251  HAO  PD3 39 
PD3 HAOA HAOA H 0 0 N N N 21.525 -11.558 13.977 -1.827 5.446  -0.239 HAOA PD3 40 
PD3 HAP  HAP  H 0 1 N N N 22.283 -13.234 12.051 -3.416 5.598  2.026  HAP  PD3 41 
PD3 HAPA HAPA H 0 0 N N N 20.634 -12.815 11.939 -4.042 5.880  0.372  HAPA PD3 42 
PD3 HAR  HAR  H 0 1 N N N 23.017 -11.254 10.604 -4.132 3.295  2.025  HAR  PD3 43 
PD3 HARA HARA H 0 0 N N N 21.815 -12.079 9.715  -5.469 4.095  1.135  HARA PD3 44 
PD3 HBH  HBH  H 0 1 N N N 19.991 -10.590 10.586 -4.556 3.483  -1.008 HBH  PD3 45 
PD3 H2   H2   H 0 1 N N N 25.885 -9.363  9.612  -7.208 0.395  -3.174 H2   PD3 46 
PD3 HNAA HNAA H 0 0 N N N 23.659 -5.248  8.438  -5.081 -2.974 0.281  HNAA PD3 47 
PD3 HNAB HNAB H 0 0 N N N 24.475 -5.962  7.217  -6.305 -3.388 -0.793 HNAB PD3 48 
PD3 HAS  HAS  H 0 1 N N N 20.228 -5.480  9.173  -3.534 -1.237 2.715  HAS  PD3 49 
PD3 HASA HASA H 0 0 N N N 21.311 -5.650  7.735  -4.464 -2.318 1.651  HASA PD3 50 
PD3 HAM  HAM  H 0 1 N N N 18.164 -4.854  8.106  -1.153 -0.909 2.378  HAM  PD3 51 
PD3 HAH  HAH  H 0 1 N N N 20.328 -8.274  6.718  -3.384 -3.505 -0.165 HAH  PD3 52 
PD3 HAF  HAF  H 0 1 N N N 18.406 -8.925  5.302  -1.290 -4.464 -1.034 HAF  PD3 53 
PD3 HAI  HAI  H 0 1 N N N 16.364 -7.539  5.307  0.878  -3.646 -0.205 HAI  PD3 54 
PD3 HNAW HNAW H 0 0 N N N 15.281 -5.795  6.050  1.327  -1.497 2.543  HNAW PD3 55 
PD3 HNAX HNAX H 0 0 N N N 13.914 -4.441  6.400  3.542  -0.869 2.137  HNAX PD3 56 
PD3 HAN  HAN  H 0 1 N N N 15.543 -1.901  8.455  5.164  0.877  1.216  HAN  PD3 57 
PD3 HAJ  HAJ  H 0 1 N N N 12.028 -3.318  6.482  4.097  -2.751 -0.779 HAJ  PD3 58 
PD3 HAG  HAG  H 0 1 N N N 10.846 -1.231  7.059  5.968  -2.434 -2.345 HAG  PD3 59 
PD3 HAK  HAK  H 0 1 N N N 12.029 0.532   8.326  7.432  -0.467 -2.135 HAK  PD3 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PD3 C5  C4   DOUB Y N 1  
PD3 C4  N3   SING Y N 2  
PD3 C4  NBI  SING Y N 3  
PD3 C6  C5   SING Y N 4  
PD3 CBE C5   SING Y N 5  
PD3 NAA C6   SING N N 6  
PD3 C6  N1   DOUB Y N 7  
PD3 N1  C2   SING Y N 8  
PD3 C2  N3   DOUB Y N 9  
PD3 CBH CAQ  SING N N 10 
PD3 CAQ CAO  SING N N 11 
PD3 CAQ HAQ  SING N N 12 
PD3 CAQ HAQA SING N N 13 
PD3 CAP CAO  SING N N 14 
PD3 CAO HAO  SING N N 15 
PD3 CAO HAOA SING N N 16 
PD3 CAR CAP  SING N N 17 
PD3 CAP HAP  SING N N 18 
PD3 CAP HAPA SING N N 19 
PD3 CAR CBH  SING N N 20 
PD3 CAR HAR  SING N N 21 
PD3 CAR HARA SING N N 22 
PD3 NBI CBH  SING N N 23 
PD3 CBH HBH  SING N N 24 
PD3 NAV NBI  SING Y N 25 
PD3 CBE NAV  DOUB Y N 26 
PD3 C2  H2   SING N N 27 
PD3 NAA HNAA SING N N 28 
PD3 NAA HNAB SING N N 29 
PD3 CAS CBE  SING N N 30 
PD3 CAZ CAS  SING N N 31 
PD3 CAS HAS  SING N N 32 
PD3 CAS HASA SING N N 33 
PD3 CAH CAZ  DOUB Y N 34 
PD3 CAM CAZ  SING Y N 35 
PD3 CBB CAM  DOUB Y N 36 
PD3 CAM HAM  SING N N 37 
PD3 CAF CAH  SING Y N 38 
PD3 CAH HAH  SING N N 39 
PD3 CAF CAI  DOUB Y N 40 
PD3 CAF HAF  SING N N 41 
PD3 CAI CBB  SING Y N 42 
PD3 CAI HAI  SING N N 43 
PD3 NAW CBB  SING N N 44 
PD3 NAW CAY  SING N N 45 
PD3 NAW HNAW SING N N 46 
PD3 NAX CAY  SING N N 47 
PD3 CAY OAB  DOUB N N 48 
PD3 NAX CBC  SING N N 49 
PD3 NAX HNAX SING N N 50 
PD3 CAJ CBC  DOUB Y N 51 
PD3 CBC CAN  SING Y N 52 
PD3 CAN CBD  DOUB Y N 53 
PD3 CAN HAN  SING N N 54 
PD3 CAJ CAG  SING Y N 55 
PD3 CAJ HAJ  SING N N 56 
PD3 CAG CAK  DOUB Y N 57 
PD3 CAG HAG  SING N N 58 
PD3 CAK CBD  SING Y N 59 
PD3 CAK HAK  SING N N 60 
PD3 CBD CBJ  SING N N 61 
PD3 FAE CBJ  SING N N 62 
PD3 CBJ FAD  SING N N 63 
PD3 CBJ FAC  SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PD3 SMILES           ACDLabs              10.04 "FC(F)(F)c1cc(ccc1)NC(=O)Nc2cccc(c2)Cc4nn(c3ncnc(c34)N)C5CCCC5"                                                                                                                                      
PD3 SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(nc(Cc3cccc(NC(=O)Nc4cccc(c4)C(F)(F)F)c3)c12)C5CCCC5"                                                                                                                                      
PD3 SMILES           CACTVS               3.341 "Nc1ncnc2n(nc(Cc3cccc(NC(=O)Nc4cccc(c4)C(F)(F)F)c3)c12)C5CCCC5"                                                                                                                                      
PD3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)NC(=O)Nc2cccc(c2)C(F)(F)F)Cc3c4c(ncnc4n(n3)C5CCCC5)N"                                                                                                                                    
PD3 SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)NC(=O)Nc2cccc(c2)C(F)(F)F)Cc3c4c(ncnc4n(n3)C5CCCC5)N"                                                                                                                                    
PD3 InChI            InChI                1.03  "InChI=1S/C25H24F3N7O/c26-25(27,28)16-6-4-8-18(13-16)33-24(36)32-17-7-3-5-15(11-17)12-20-21-22(29)30-14-31-23(21)35(34-20)19-9-1-2-10-19/h3-8,11,13-14,19H,1-2,9-10,12H2,(H2,29,30,31)(H2,32,33,36)" 
PD3 InChIKey         InChI                1.03  RKZUINFXRREENO-UHFFFAOYSA-N                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PD3 "SYSTEMATIC NAME" ACDLabs              10.04 "1-{3-[(4-amino-1-cyclopentyl-1H-pyrazolo[3,4-d]pyrimidin-3-yl)methyl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea" 
PD3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[3-[(4-amino-1-cyclopentyl-pyrazolo[4,5-e]pyrimidin-3-yl)methyl]phenyl]-3-[3-(trifluoromethyl)phenyl]urea"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PD3 "Create component"     2008-10-06 RCSB 
PD3 "Modify aromatic_flag" 2011-06-04 RCSB 
PD3 "Modify descriptor"    2011-06-04 RCSB 
# 
