data_VB3
#

_chem_comp.id                                   VB3
_chem_comp.name                                 "2-({[(2S)-1-cyclohexylpropan-2-yl]amino}methyl)phenol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H25 N O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-17
_chem_comp.pdbx_modified_date                   2020-11-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       247.376
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VB3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OZ5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VB3  C01   C1   C  0  1  N  N  N  14.316  -10.908  -71.787  -0.280   3.274   0.338  C01   VB3   1  
VB3  C02   C2   C  0  1  N  N  S  13.608  -11.593  -70.599  -0.738   1.815   0.379  C02   VB3   2  
VB3  C04   C3   C  0  1  N  N  N  11.148  -11.617  -70.013   1.278   0.621   0.988  C04   VB3   3  
VB3  C05   C4   C  0  1  Y  N  N  10.635  -12.360  -71.282   2.375  -0.268   0.460  C05   VB3   4  
VB3  C06   C5   C  0  1  Y  N  N  10.513  -11.826  -72.548   3.442   0.283  -0.234  C06   VB3   5  
VB3  C08   C6   C  0  1  Y  N  N  10.062  -12.450  -73.685   4.453  -0.537  -0.714  C08   VB3   6  
VB3  C09   C7   C  0  1  Y  N  N   9.668  -13.812  -73.554   4.394  -1.900  -0.500  C09   VB3   7  
VB3  C10   C8   C  0  1  Y  N  N   9.754  -14.459  -72.289   3.329  -2.448   0.192  C10   VB3   8  
VB3  C11   C9   C  0  1  Y  N  N  10.238  -13.716  -71.162   2.321  -1.633   0.672  C11   VB3   9  
VB3  C12   C10  C  0  1  N  N  N  14.590  -11.696  -69.350  -1.965   1.639  -0.518  C12   VB3  10  
VB3  C13   C11  C  0  1  N  N  N  14.322  -12.900  -68.354  -2.497   0.212  -0.380  C13   VB3  11  
VB3  C14   C12  C  0  1  N  N  N  14.452  -14.273  -69.099  -3.004  -0.008   1.047  C14   VB3  12  
VB3  C15   C13  C  0  1  N  N  N  14.382  -15.538  -68.201  -3.537  -1.436   1.184  C15   VB3  13  
VB3  C16   C14  C  0  1  N  N  N  14.758  -15.279  -66.745  -4.686  -1.650   0.196  C16   VB3  14  
VB3  C17   C15  C  0  1  N  N  N  15.821  -14.178  -66.634  -4.179  -1.430  -1.230  C17   VB3  15  
VB3  C18   C16  C  0  1  N  N  N  15.301  -12.816  -67.138  -3.646  -0.002  -1.368  C18   VB3  16  
VB3  N03   N1   N  0  1  N  N  N  12.374  -10.766  -70.255   0.347   0.948  -0.100  N03   VB3  17  
VB3  O07   O1   O  0  1  N  N  N  10.918  -10.431  -72.660   3.497   1.625  -0.444  O07   VB3  18  
VB3  H012  H1   H  0  0  N  N  N  15.213  -11.482  -72.060   0.594   3.399   0.977  H012  VB3  19  
VB3  H013  H2   H  0  0  N  N  N  13.631  -10.866  -72.647  -0.024   3.545  -0.686  H013  VB3  20  
VB3  H011  H3   H  0  0  N  N  N  14.608   -9.887  -71.501  -1.085   3.918   0.693  H011  VB3  21  
VB3  H021  H4   H  0  0  N  N  N  13.302  -12.608  -70.893  -0.995   1.543   1.403  H021  VB3  22  
VB3  H042  H5   H  0  0  N  N  N  10.342  -10.966  -69.643   0.742   0.102   1.783  H042  VB3  23  
VB3  H041  H6   H  0  0  N  N  N  11.393  -12.368  -69.247   1.713   1.539   1.382  H041  VB3  24  
VB3  H081  H7   H  0  0  N  N  N  10.009  -11.933  -74.632   5.284  -0.110  -1.255  H081  VB3  25  
VB3  H091  H8   H  0  0  N  N  N   9.304  -14.354  -74.414   5.181  -2.539  -0.873  H091  VB3  26  
VB3  H101  H9   H  0  0  N  N  N   9.460  -15.492  -72.180   3.285  -3.514   0.359  H101  VB3  27  
VB3  H111  H10  H  0  0  N  N  N  10.302  -14.201  -70.199   1.493  -2.062   1.215  H111  VB3  28  
VB3  H121  H11  H  0  0  N  N  N  15.615  -11.799  -69.735  -2.739   2.346  -0.218  H121  VB3  29  
VB3  H122  H12  H  0  0  N  N  N  14.506  -10.760  -68.778  -1.686   1.825  -1.555  H122  VB3  30  
VB3  H131  H13  H  0  0  N  N  N  13.293  -12.808  -67.977  -1.697  -0.497  -0.595  H131  VB3  31  
VB3  H141  H14  H  0  0  N  N  N  13.637  -14.336  -69.835  -2.186   0.144   1.750  H141  VB3  32  
VB3  H142  H15  H  0  0  N  N  N  15.420  -14.283  -69.622  -3.805   0.700   1.261  H142  VB3  33  
VB3  H151  H16  H  0  0  N  N  N  13.354  -15.928  -68.230  -2.737  -2.145   0.970  H151  VB3  34  
VB3  H152  H17  H  0  0  N  N  N  15.072  -16.292  -68.609  -3.898  -1.593   2.201  H152  VB3  35  
VB3  H161  H18  H  0  0  N  N  N  13.859  -14.967  -66.192  -5.065  -2.667   0.294  H161  VB3  36  
VB3  H162  H19  H  0  0  N  N  N  15.155  -16.206  -66.306  -5.486  -0.941   0.411  H162  VB3  37  
VB3  H171  H20  H  0  0  N  N  N  16.696  -14.468  -67.235  -3.378  -2.138  -1.445  H171  VB3  38  
VB3  H172  H21  H  0  0  N  N  N  16.117  -14.076  -65.580  -4.997  -1.582  -1.934  H172  VB3  39  
VB3  H182  H22  H  0  0  N  N  N  16.167  -12.208  -67.437  -4.446   0.707  -1.154  H182  VB3  40  
VB3  H181  H23  H  0  0  N  N  N  14.775  -12.322  -66.308  -3.285   0.155  -2.385  H181  VB3  41  
VB3  H1    H24  H  0  1  N  N  N  12.564  -10.237  -69.428  -0.021   0.110  -0.525  H1    VB3  42  
VB3  H071  H26  H  0  0  N  N  N  11.208  -10.116  -71.812   3.954   2.114   0.254  H071  VB3  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VB3  C08  C09   DOUB  Y  N   1  
VB3  C08  C06   SING  Y  N   2  
VB3  C09  C10   SING  Y  N   3  
VB3  O07  C06   SING  N  N   4  
VB3  C06  C05   DOUB  Y  N   5  
VB3  C10  C11   DOUB  Y  N   6  
VB3  C01  C02   SING  N  N   7  
VB3  C05  C11   SING  Y  N   8  
VB3  C05  C04   SING  N  N   9  
VB3  C02  N03   SING  N  N  10  
VB3  C02  C12   SING  N  N  11  
VB3  N03  C04   SING  N  N  12  
VB3  C12  C13   SING  N  N  13  
VB3  C14  C13   SING  N  N  14  
VB3  C14  C15   SING  N  N  15  
VB3  C13  C18   SING  N  N  16  
VB3  C15  C16   SING  N  N  17  
VB3  C18  C17   SING  N  N  18  
VB3  C16  C17   SING  N  N  19  
VB3  C01  H012  SING  N  N  20  
VB3  C01  H013  SING  N  N  21  
VB3  C01  H011  SING  N  N  22  
VB3  C02  H021  SING  N  N  23  
VB3  C04  H042  SING  N  N  24  
VB3  C04  H041  SING  N  N  25  
VB3  C08  H081  SING  N  N  26  
VB3  C09  H091  SING  N  N  27  
VB3  C10  H101  SING  N  N  28  
VB3  C11  H111  SING  N  N  29  
VB3  C12  H121  SING  N  N  30  
VB3  C12  H122  SING  N  N  31  
VB3  C13  H131  SING  N  N  32  
VB3  C14  H141  SING  N  N  33  
VB3  C14  H142  SING  N  N  34  
VB3  C15  H151  SING  N  N  35  
VB3  C15  H152  SING  N  N  36  
VB3  C16  H161  SING  N  N  37  
VB3  C16  H162  SING  N  N  38  
VB3  C17  H171  SING  N  N  39  
VB3  C17  H172  SING  N  N  40  
VB3  C18  H182  SING  N  N  41  
VB3  C18  H181  SING  N  N  42  
VB3  N03  H1    SING  N  N  43  
VB3  O07  H071  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VB3  SMILES            ACDLabs               12.01  "CC(NCc1ccccc1O)CC2CCCCC2"  
VB3  InChI             InChI                 1.03   "InChI=1S/C16H25NO/c1-13(11-14-7-3-2-4-8-14)17-12-15-9-5-6-10-16(15)18/h5-6,9-10,13-14,17-18H,2-4,7-8,11-12H2,1H3/t13-/m0/s1"  
VB3  InChIKey          InChI                 1.03   IRWBEPDMVHOCPD-ZDUSSCGKSA-N  
VB3  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](CC1CCCCC1)NCc2ccccc2O"  
VB3  SMILES            CACTVS                3.385  "C[CH](CC1CCCCC1)NCc2ccccc2O"  
VB3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](CC1CCCCC1)NCc2ccccc2O"  
VB3  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(CC1CCCCC1)NCc2ccccc2O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VB3  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-({[(2S)-1-cyclohexylpropan-2-yl]amino}methyl)phenol"  
VB3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[[[(2~{S})-1-cyclohexylpropan-2-yl]amino]methyl]phenol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VB3  "Create component"  2019-05-17  RCSB  
VB3  "Initial release"   2020-11-18  RCSB  
##
