data_WD3
# 
_chem_comp.id                                    WD3 
_chem_comp.name                                  "3-[2-[[5-chloranyl-2-[(3-fluorophenyl)methylamino]phenyl]methyl]-4-oxidanylidene-3~{H}-quinazolin-7-yl]prop-2-enoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H19 Cl F N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        463.888 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WD3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WKF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WD3 C1  C1  C  0 1 Y N N N N N 27.060 -16.774 -21.397 1.758  3.496  -0.502 C1  WD3 1  
WD3 C2  C2  C  0 1 Y N N N N N 27.972 -15.775 -21.068 2.093  2.159  -0.592 C2  WD3 2  
WD3 C3  C3  C  0 1 N N N N N N 29.411 -16.138 -20.786 2.037  1.455  -1.923 C3  WD3 3  
WD3 C4  C4  C  0 1 N N N N N N 29.696 -16.275 -19.329 0.707  0.761  -2.068 C4  WD3 4  
WD3 C5  C5  C  0 1 Y N N N N N 30.312 -15.312 -17.306 -1.366 0.264  -1.158 C5  WD3 5  
WD3 C6  C6  C  0 1 Y N N N N N 30.717 -14.183 -16.596 -2.283 0.369  -0.113 C6  WD3 6  
WD3 C7  C7  C  0 1 Y N N N N N 30.935 -14.246 -15.215 -3.518 -0.267 -0.219 C7  WD3 7  
WD3 C8  C8  C  0 1 N N N N N N 31.354 -13.051 -14.477 -4.493 -0.161 0.879  C8  WD3 8  
WD3 C9  C9  C  0 1 N N N N N N 31.387 -12.898 -13.158 -5.689 -0.775 0.781  C9  WD3 9  
WD3 C10 C10 C  0 1 N N N N N N 31.079 -11.607 -12.505 -6.659 -0.669 1.873  C10 WD3 10 
WD3 C11 C11 C  0 1 Y N N N N N 30.743 -15.463 -14.561 -3.839 -1.008 -1.367 C11 WD3 11 
WD3 C12 C12 C  0 1 Y N N N N N 30.343 -16.592 -15.252 -2.948 -1.116 -2.395 C12 WD3 12 
WD3 C13 C13 C  0 1 Y N N N N N 30.124 -16.523 -16.628 -1.706 -0.486 -2.306 C13 WD3 13 
WD3 C14 C14 C  0 1 N N N N N N 29.687 -17.705 -17.384 -0.714 -0.575 -3.390 C14 WD3 14 
WD3 C15 C15 C  0 1 Y N N N N N 27.520 -14.453 -20.960 2.483  1.464  0.546  C15 WD3 15 
WD3 C16 C16 C  0 1 N N N N N N 27.956 -12.131 -20.259 3.234  -0.619 1.660  C16 WD3 16 
WD3 C17 C17 C  0 1 Y N N N N N 27.211 -12.020 -18.951 3.543  -2.049 1.296  C17 WD3 17 
WD3 C18 C18 C  0 1 Y N N N N N 25.912 -11.533 -18.916 4.825  -2.405 0.922  C18 WD3 18 
WD3 C19 C19 C  0 1 Y N N N N N 25.210 -11.472 -17.723 5.110  -3.716 0.588  C19 WD3 19 
WD3 C20 C20 C  0 1 Y N N N N N 25.796 -11.893 -16.541 4.114  -4.672 0.627  C20 WD3 20 
WD3 C21 C21 C  0 1 Y N N N N N 27.079 -12.362 -16.600 2.829  -4.317 1.003  C21 WD3 21 
WD3 C22 C22 C  0 1 Y N N N N N 27.804 -12.438 -17.764 2.546  -3.005 1.343  C22 WD3 22 
WD3 C23 C23 C  0 1 Y N N N N N 26.178 -14.155 -21.198 2.534  2.117  1.771  C23 WD3 23 
WD3 C24 C24 C  0 1 Y N N N N N 25.283 -15.160 -21.519 2.197  3.454  1.855  C24 WD3 24 
WD3 O1  O1  O  0 1 N N N N N N 30.907 -11.538 -11.294 -7.856 -1.284 1.774  O1  WD3 25 
WD3 O2  O2  O  0 1 N N N N N N 29.490 -18.808 -16.884 -0.943 -1.204 -4.406 O2  WD3 26 
WD3 N   N1  N  0 1 N N N N N N 30.097 -15.190 -18.677 -0.149 0.861  -1.098 N   WD3 27 
WD3 C   C25 C  0 1 Y N N N N N 25.734 -16.456 -21.602 1.815  4.144  0.719  C   WD3 28 
WD3 O   O3  O  0 1 N N N N N N 31.000 -10.570 -13.289 -6.385 -0.029 2.869  O   WD3 29 
WD3 CL  CL1 CL 0 0 N N N N N N 24.596 -17.737 -21.913 1.393  5.825  0.828  CL  WD3 30 
WD3 N1  N2  N  0 1 N N N N N N 29.500 -17.490 -18.728 0.464  0.066  -3.210 N1  WD3 31 
WD3 N2  N3  N  0 1 N N N N N N 28.396 -13.487 -20.538 2.822  0.112  0.459  N2  WD3 32 
WD3 F   F1  F  0 1 N N N N N N 27.671 -12.775 -15.449 1.854  -5.251 1.042  F   WD3 33 
WD3 H1  H1  H  0 1 N N N N N N 27.391 -17.798 -21.492 1.455  4.036  -1.387 H1  WD3 34 
WD3 H2  H2  H  0 1 N N N N N N 29.636 -17.095 -21.280 2.155  2.184  -2.725 H2  WD3 35 
WD3 H3  H3  H  0 1 N N N N N N 30.060 -15.351 -21.199 2.839  0.719  -1.979 H3  WD3 36 
WD3 H4  H4  H  0 1 N N N N N N 30.864 -13.249 -17.118 -2.039 0.938  0.772  H4  WD3 37 
WD3 H5  H5  H  0 1 N N N N N N 31.670 -12.205 -15.069 -4.250 0.408  1.764  H5  WD3 38 
WD3 H7  H7  H  0 1 N N N N N N 31.648 -13.745 -12.541 -5.933 -1.344 -0.104 H7  WD3 39 
WD3 H9  H9  H  0 1 N N N N N N 30.910 -15.525 -13.496 -4.800 -1.497 -1.438 H9  WD3 40 
WD3 H10 H10 H  0 1 N N N N N N 30.200 -17.525 -14.728 -3.203 -1.688 -3.274 H10 WD3 41 
WD3 H11 H11 H  0 1 N N N N N N 28.838 -11.476 -20.219 2.427  -0.598 2.392  H11 WD3 42 
WD3 H12 H12 H  0 1 N N N N N N 27.292 -11.802 -21.072 4.122  -0.152 2.084  H12 WD3 43 
WD3 H13 H13 H  0 1 N N N N N N 25.443 -11.198 -19.829 5.605  -1.658 0.890  H13 WD3 44 
WD3 H14 H14 H  0 1 N N N N N N 24.199 -11.093 -17.715 6.113  -3.992 0.295  H14 WD3 45 
WD3 H15 H15 H  0 1 N N N N N N 25.258 -11.852 -15.605 4.337  -5.695 0.366  H15 WD3 46 
WD3 H16 H16 H  0 1 N N N N N N 28.816 -12.815 -17.758 1.545  -2.728 1.640  H16 WD3 47 
WD3 H17 H17 H  0 1 N N N N N N 25.835 -13.133 -21.131 2.837  1.579  2.658  H17 WD3 48 
WD3 H18 H18 H  0 1 N N N N N N 24.244 -14.929 -21.702 2.237  3.961  2.807  H18 WD3 49 
WD3 H19 H19 H  0 1 N N N N N N 30.717 -10.639 -11.051 -8.462 -1.185 2.521  H19 WD3 50 
WD3 H20 H20 H  0 1 N N N N N N 29.206 -18.259 -19.296 1.142  0.029  -3.903 H20 WD3 51 
WD3 H21 H21 H  0 1 N N N N N N 28.807 -13.829 -19.693 2.786  -0.343 -0.397 H21 WD3 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WD3 CL  C   SING N N 1  
WD3 C   C24 DOUB Y N 2  
WD3 C   C1  SING Y N 3  
WD3 C24 C23 SING Y N 4  
WD3 C1  C2  DOUB Y N 5  
WD3 C23 C15 DOUB Y N 6  
WD3 C2  C15 SING Y N 7  
WD3 C2  C3  SING N N 8  
WD3 C15 N2  SING N N 9  
WD3 C3  C4  SING N N 10 
WD3 N2  C16 SING N N 11 
WD3 C16 C17 SING N N 12 
WD3 C4  N1  SING N N 13 
WD3 C4  N   DOUB N N 14 
WD3 C17 C18 DOUB Y N 15 
WD3 C17 C22 SING Y N 16 
WD3 C18 C19 SING Y N 17 
WD3 N1  C14 SING N N 18 
WD3 N   C5  SING N N 19 
WD3 C22 C21 DOUB Y N 20 
WD3 C19 C20 DOUB Y N 21 
WD3 C14 O2  DOUB N N 22 
WD3 C14 C13 SING N N 23 
WD3 C5  C13 DOUB Y N 24 
WD3 C5  C6  SING Y N 25 
WD3 C13 C12 SING Y N 26 
WD3 C21 C20 SING Y N 27 
WD3 C21 F   SING N N 28 
WD3 C6  C7  DOUB Y N 29 
WD3 C12 C11 DOUB Y N 30 
WD3 C7  C11 SING Y N 31 
WD3 C7  C8  SING N N 32 
WD3 C8  C9  DOUB N E 33 
WD3 O   C10 DOUB N N 34 
WD3 C9  C10 SING N N 35 
WD3 C10 O1  SING N N 36 
WD3 C1  H1  SING N N 37 
WD3 C3  H2  SING N N 38 
WD3 C3  H3  SING N N 39 
WD3 C6  H4  SING N N 40 
WD3 C8  H5  SING N N 41 
WD3 C9  H7  SING N N 42 
WD3 C11 H9  SING N N 43 
WD3 C12 H10 SING N N 44 
WD3 C16 H11 SING N N 45 
WD3 C16 H12 SING N N 46 
WD3 C18 H13 SING N N 47 
WD3 C19 H14 SING N N 48 
WD3 C20 H15 SING N N 49 
WD3 C22 H16 SING N N 50 
WD3 C23 H17 SING N N 51 
WD3 C24 H18 SING N N 52 
WD3 O1  H19 SING N N 53 
WD3 N1  H20 SING N N 54 
WD3 N2  H21 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WD3 InChI            InChI                1.06  "InChI=1S/C25H19ClFN3O3/c26-18-6-8-21(28-14-16-2-1-3-19(27)10-16)17(12-18)13-23-29-22-11-15(5-9-24(31)32)4-7-20(22)25(33)30-23/h1-12,28H,13-14H2,(H,31,32)(H,29,30,33)/b9-5+" 
WD3 InChIKey         InChI                1.06  GAOVVHYYICHQJM-WEVVVXLNSA-N                                                                                                                                                   
WD3 SMILES_CANONICAL CACTVS               3.385 "OC(=O)/C=C/c1ccc2C(=O)NC(=Nc2c1)Cc3cc(Cl)ccc3NCc4cccc(F)c4"                                                                                                                  
WD3 SMILES           CACTVS               3.385 "OC(=O)C=Cc1ccc2C(=O)NC(=Nc2c1)Cc3cc(Cl)ccc3NCc4cccc(F)c4"                                                                                                                    
WD3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)F)CNc2ccc(cc2CC3=Nc4cc(ccc4C(=O)N3)C=CC(=O)O)Cl"                                                                                                                  
WD3 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)F)CNc2ccc(cc2CC3=Nc4cc(ccc4C(=O)N3)C=CC(=O)O)Cl"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           WD3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[2-[[5-chloranyl-2-[(3-fluorophenyl)methylamino]phenyl]methyl]-4-oxidanylidene-3~{H}-quinazolin-7-yl]prop-2-enoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WD3 "Create component" 2023-09-29 PDBJ 
WD3 "Initial release"  2024-10-02 RCSB 
# 
