data_WS3
# 
_chem_comp.id                                    WS3 
_chem_comp.name                                  "5'-deoxy-5'-[({6-[(alpha-D-galactopyranosyloxy)methyl]pyridin-2-yl}carbonyl)amino]uridine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H28 N4 O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-08-15 
_chem_comp.pdbx_modified_date                    2013-09-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        540.477 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WS3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4KC4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WS3 O4    O4    O 0 1 N N N 17.971 23.719 11.272 -7.213 3.907  -2.322 O4    WS3 1  
WS3 C4    C4    C 0 1 N N N 17.504 23.630 10.112 -6.678 3.078  -1.607 C4    WS3 2  
WS3 N3    N3    N 0 1 N N N 18.152 24.220 9.096  -6.200 3.429  -0.397 N3    WS3 3  
WS3 C2    C2    C 0 1 N N N 17.681 24.146 7.842  -5.609 2.512  0.391  C2    WS3 4  
WS3 O2    O2    O 0 1 N N N 18.298 24.708 6.924  -5.182 2.844  1.481  O2    WS3 5  
WS3 C5    C5    C 0 1 N N N 16.328 22.917 9.868  -6.558 1.734  -2.039 C5    WS3 6  
WS3 C6    C6    C 0 1 N N N 15.832 22.840 8.565  -5.961 0.835  -1.227 C6    WS3 7  
WS3 N1    N1    N 0 1 N N N 16.492 23.436 7.550  -5.483 1.234  -0.009 N1    WS3 8  
WS3 C11   C11   C 0 1 N N R 16.000 23.388 6.159  -4.835 0.258  0.871  C11   WS3 9  
WS3 O44   O44   O 0 1 N N N 14.680 22.830 6.112  -3.789 -0.441 0.163  O44   WS3 10 
WS3 C22   C22   C 0 1 N N R 16.883 22.509 5.272  -5.838 -0.842 1.285  C22   WS3 11 
WS3 O22   O22   O 0 1 N N N 16.927 22.999 3.917  -6.374 -0.570 2.582  O22   WS3 12 
WS3 C33   C33   C 0 1 N N S 16.138 21.199 5.274  -4.990 -2.133 1.310  C33   WS3 13 
WS3 O33   O33   O 0 1 N N N 16.482 20.425 4.121  -4.975 -2.697 2.623  O33   WS3 14 
WS3 C44   C44   C 0 1 N N R 14.683 21.660 5.285  -3.573 -1.659 0.908  C44   WS3 15 
WS3 C55   C55   C 0 1 N N N 13.648 20.654 5.794  -2.890 -2.708 0.029  C55   WS3 16 
WS3 N11   N11   N 0 1 N N N 14.108 19.934 6.971  -1.510 -2.296 -0.241 N11   WS3 17 
WS3 C12   C12   C 0 1 N N N 14.707 18.748 6.862  -0.711 -3.071 -1.001 C12   WS3 18 
WS3 O13   O13   O 0 1 N N N 15.127 18.330 5.781  -1.135 -4.112 -1.462 O13   WS3 19 
WS3 C14   C14   C 0 1 Y N N 14.880 17.901 8.090  0.684  -2.654 -1.274 C14   WS3 20 
WS3 C15   C15   C 0 1 Y N N 14.429 18.341 9.339  1.505  -3.460 -2.060 C15   WS3 21 
WS3 C16   C16   C 0 1 Y N N 14.607 17.524 10.456 2.807  -3.056 -2.307 C16   WS3 22 
WS3 C17   C17   C 0 1 Y N N 15.232 16.286 10.301 3.244  -1.860 -1.759 C17   WS3 23 
WS3 C18   C18   C 0 1 Y N N 15.668 15.882 9.036  2.373  -1.109 -0.987 C18   WS3 24 
WS3 N19   N19   N 0 1 Y N N 15.484 16.694 7.967  1.140  -1.513 -0.772 N19   WS3 25 
WS3 C20   C20   C 0 1 N N N 16.351 14.543 8.844  2.843  0.192  -0.389 C20   WS3 26 
WS3 "O1'" "O1'" O 0 1 N N N 15.693 13.567 9.644  4.203  0.423  -0.761 "O1'" WS3 27 
WS3 "C1'" "C1'" C 0 1 N N S 15.922 12.209 9.252  4.749  1.638  -0.243 "C1'" WS3 28 
WS3 "O5'" "O5'" O 0 1 N N N 16.212 12.075 7.848  4.918  1.520  1.171  "O5'" WS3 29 
WS3 "C5'" "C5'" C 0 1 N N R 17.566 12.071 7.387  5.773  0.446  1.569  "C5'" WS3 30 
WS3 "C6'" "C6'" C 0 1 N N N 17.556 11.559 5.946  5.857  0.399  3.096  "C6'" WS3 31 
WS3 "O6'" "O6'" O 0 1 N N N 18.750 10.817 5.657  4.572  0.078  3.634  "O6'" WS3 32 
WS3 "C4'" "C4'" C 0 1 N N R 18.443 11.185 8.253  7.172  0.667  0.988  "C4'" WS3 33 
WS3 "O4'" "O4'" O 0 1 N N N 17.990 9.829  8.156  7.723  1.876  1.516  "O4'" WS3 34 
WS3 "C3'" "C3'" C 0 1 N N S 18.369 11.648 9.695  7.072  0.774  -0.537 "C3'" WS3 35 
WS3 "O3'" "O3'" O 0 1 N N N 19.181 10.804 10.514 8.363  1.053  -1.082 "O3'" WS3 36 
WS3 "C2'" "C2'" C 0 1 N N R 16.937 11.558 10.191 6.107  1.907  -0.896 "C2'" WS3 37 
WS3 "O2'" "O2'" O 0 1 N N N 16.839 12.189 11.471 5.950  1.969  -2.316 "O2'" WS3 38 
WS3 H1    H1    H 0 1 N N N 18.998 24.722 9.276  -6.281 4.347  -0.093 H1    WS3 39 
WS3 H2    H2    H 0 1 N N N 15.807 22.430 10.679 -6.939 1.433  -3.003 H2    WS3 40 
WS3 H3    H3    H 0 1 N N N 14.917 22.301 8.369  -5.860 -0.194 -1.539 H3    WS3 41 
WS3 H4    H4    H 0 1 N N N 15.990 24.406 5.743  -4.431 0.754  1.753  H4    WS3 42 
WS3 H5    H5    H 0 1 N N N 17.887 22.397 5.707  -6.639 -0.925 0.550  H5    WS3 43 
WS3 H6    H6    H 0 1 N N N 17.394 23.826 3.894  -6.964 -1.259 2.916  H6    WS3 44 
WS3 H7    H7    H 0 1 N N N 16.357 20.646 6.199  -5.371 -2.855 0.587  H7    WS3 45 
WS3 H8    H8    H 0 1 N N N 16.186 19.530 4.240  -5.848 -2.956 2.950  H8    WS3 46 
WS3 H9    H9    H 0 1 N N N 14.407 21.941 4.258  -2.973 -1.461 1.796  H9    WS3 47 
WS3 H10   H10   H 0 1 N N N 12.725 21.195 6.049  -2.887 -3.669 0.544  H10   WS3 48 
WS3 H11   H11   H 0 1 N N N 13.438 19.928 4.995  -3.431 -2.802 -0.912 H11   WS3 49 
WS3 H12   H12   H 0 1 N N N 13.973 20.335 7.877  -1.171 -1.464 0.127  H12   WS3 50 
WS3 H13   H13   H 0 1 N N N 13.948 19.303 9.438  1.131  -4.386 -2.471 H13   WS3 51 
WS3 H14   H14   H 0 1 N N N 14.265 17.846 11.429 3.467  -3.660 -2.913 H14   WS3 52 
WS3 H15   H15   H 0 1 N N N 15.378 15.642 11.156 4.253  -1.517 -1.933 H15   WS3 53 
WS3 H16   H16   H 0 1 N N N 16.296 14.250 7.785  2.222  1.008  -0.760 H16   WS3 54 
WS3 H17   H17   H 0 1 N N N 17.405 14.620 9.149  2.766  0.142  0.697  H17   WS3 55 
WS3 H18   H18   H 0 1 N N N 14.978 11.672 9.426  4.071  2.463  -0.460 H18   WS3 56 
WS3 H19   H19   H 0 1 N N N 17.972 13.093 7.397  5.370  -0.496 1.197  H19   WS3 57 
WS3 H20   H20   H 0 1 N N N 17.490 12.416 5.260  6.577  -0.362 3.397  H20   WS3 58 
WS3 H21   H21   H 0 1 N N N 16.683 10.906 5.802  6.176  1.370  3.473  H21   WS3 59 
WS3 H22   H22   H 0 1 N N N 18.722 10.509 4.759  4.550  0.031  4.599  H22   WS3 60 
WS3 H23   H23   H 0 1 N N N 19.484 11.262 7.905  7.814  -0.173 1.253  H23   WS3 61 
WS3 H24   H24   H 0 1 N N N 18.537 9.272  8.697  8.610  2.079  1.189  H24   WS3 62 
WS3 H25   H25   H 0 1 N N N 18.710 12.692 9.759  6.699  -0.166 -0.944 H25   WS3 63 
WS3 H26   H26   H 0 1 N N N 19.133 11.096 11.417 8.374  1.134  -2.046 H26   WS3 64 
WS3 H27   H27   H 0 1 N N N 16.675 10.494 10.290 6.505  2.854  -0.532 H27   WS3 65 
WS3 H28   H28   H 0 1 N N N 17.465 11.795 12.068 5.347  2.663  -2.615 H28   WS3 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WS3 O22   C22   SING N N 1  
WS3 O33   C33   SING N N 2  
WS3 C22   C33   SING N N 3  
WS3 C22   C11   SING N N 4  
WS3 C33   C44   SING N N 5  
WS3 C44   C55   SING N N 6  
WS3 C44   O44   SING N N 7  
WS3 "O6'" "C6'" SING N N 8  
WS3 O13   C12   DOUB N N 9  
WS3 C55   N11   SING N N 10 
WS3 "C6'" "C5'" SING N N 11 
WS3 O44   C11   SING N N 12 
WS3 C11   N1    SING N N 13 
WS3 C12   N11   SING N N 14 
WS3 C12   C14   SING N N 15 
WS3 O2    C2    DOUB N N 16 
WS3 "C5'" "O5'" SING N N 17 
WS3 "C5'" "C4'" SING N N 18 
WS3 N1    C2    SING N N 19 
WS3 N1    C6    SING N N 20 
WS3 C2    N3    SING N N 21 
WS3 "O5'" "C1'" SING N N 22 
WS3 N19   C14   DOUB Y N 23 
WS3 N19   C18   SING Y N 24 
WS3 C14   C15   SING Y N 25 
WS3 "O4'" "C4'" SING N N 26 
WS3 "C4'" "C3'" SING N N 27 
WS3 C6    C5    DOUB N N 28 
WS3 C20   C18   SING N N 29 
WS3 C20   "O1'" SING N N 30 
WS3 C18   C17   DOUB Y N 31 
WS3 N3    C4    SING N N 32 
WS3 "C1'" "O1'" SING N N 33 
WS3 "C1'" "C2'" SING N N 34 
WS3 C15   C16   DOUB Y N 35 
WS3 "C3'" "C2'" SING N N 36 
WS3 "C3'" "O3'" SING N N 37 
WS3 C5    C4    SING N N 38 
WS3 C4    O4    DOUB N N 39 
WS3 "C2'" "O2'" SING N N 40 
WS3 C17   C16   SING Y N 41 
WS3 N3    H1    SING N N 42 
WS3 C5    H2    SING N N 43 
WS3 C6    H3    SING N N 44 
WS3 C11   H4    SING N N 45 
WS3 C22   H5    SING N N 46 
WS3 O22   H6    SING N N 47 
WS3 C33   H7    SING N N 48 
WS3 O33   H8    SING N N 49 
WS3 C44   H9    SING N N 50 
WS3 C55   H10   SING N N 51 
WS3 C55   H11   SING N N 52 
WS3 N11   H12   SING N N 53 
WS3 C15   H13   SING N N 54 
WS3 C16   H14   SING N N 55 
WS3 C17   H15   SING N N 56 
WS3 C20   H16   SING N N 57 
WS3 C20   H17   SING N N 58 
WS3 "C1'" H18   SING N N 59 
WS3 "C5'" H19   SING N N 60 
WS3 "C6'" H20   SING N N 61 
WS3 "C6'" H21   SING N N 62 
WS3 "O6'" H22   SING N N 63 
WS3 "C4'" H23   SING N N 64 
WS3 "O4'" H24   SING N N 65 
WS3 "C3'" H25   SING N N 66 
WS3 "O3'" H26   SING N N 67 
WS3 "C2'" H27   SING N N 68 
WS3 "O2'" H28   SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WS3 SMILES           ACDLabs              12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)CNC(=O)c3nc(ccc3)COC4OC(C(O)C(O)C4O)CO" 
WS3 InChI            InChI                1.03  
"InChI=1S/C22H28N4O12/c27-7-12-15(30)16(31)18(33)21(38-12)36-8-9-2-1-3-10(24-9)19(34)23-6-11-14(29)17(32)20(37-11)26-5-4-13(28)25-22(26)35/h1-5,11-12,14-18,20-21,27,29-33H,6-8H2,(H,23,34)(H,25,28,35)/t11-,12-,14-,15+,16+,17-,18-,20-,21+/m1/s1" 
WS3 InChIKey         InChI                1.03  KPOTWZYLDCHCIG-DSVOXYOZSA-N 
WS3 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](OCc2cccc(n2)C(=O)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H](O)[C@@H](O)[C@H]1O" 
WS3 SMILES           CACTVS               3.385 "OC[CH]1O[CH](OCc2cccc(n2)C(=O)NC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH](O)[CH](O)[CH]1O" 
WS3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(nc(c1)C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO[C@@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O" 
WS3 SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(nc(c1)C(=O)NCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)COC4C(C(C(C(O4)CO)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WS3 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-deoxy-5'-[({6-[(alpha-D-galactopyranosyloxy)methyl]pyridin-2-yl}carbonyl)amino]uridine"                                                                                                             
WS3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-6-[[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WS3 "Create component" 2013-08-15 RCSB 
WS3 "Initial release"  2013-09-11 RCSB 
# 
