data_ZX3
# 
_chem_comp.id                                    ZX3 
_chem_comp.name                                  "3^3-ethyl-5^4-morpholino-6,9-dioxa-2,4-diaza-3(2,6)-pyrazina-1(4,1)-piperidina-5(1,3)-benzenacycloundecaphane-3^5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H37 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-13 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.616 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZX3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XB1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZX3 C1  C1  C 0 1 Y N N N N N -29.137 -3.991  -28.391 2.283  3.176  -0.024 C1  ZX3 1  
ZX3 C10 C2  C 0 1 Y N N N N N -28.913 -9.820  -29.624 -3.068 2.136  -0.112 C10 ZX3 2  
ZX3 C11 C3  C 0 1 Y N N N N N -29.458 -10.510 -28.557 -3.358 0.784  -0.192 C11 ZX3 3  
ZX3 C12 C4  C 0 1 Y N N N N N -30.199 -9.805  -27.580 -2.361 -0.117 -0.568 C12 ZX3 4  
ZX3 C13 C5  C 0 1 Y N N N N N -30.374 -8.420  -27.708 -1.086 0.354  -0.853 C13 ZX3 5  
ZX3 C14 C6  C 0 1 N N N N N N -30.322 -12.929 -28.178 -4.992 0.582  1.510  C14 ZX3 6  
ZX3 C15 C7  C 0 1 N N N N N N -29.936 -14.396 -28.477 -6.380 0.011  1.807  C15 ZX3 7  
ZX3 C16 C8  C 0 1 N N N N N N -27.823 -13.982 -29.237 -7.028 0.350  -0.474 C16 ZX3 8  
ZX3 C17 C9  C 0 1 N N N N N N -27.856 -12.488 -28.799 -5.644 0.926  -0.794 C17 ZX3 9  
ZX3 C18 C10 C 0 1 N N N N N N -28.778 -5.731  -23.567 2.899  -1.630 0.135  C18 ZX3 10 
ZX3 C19 C11 C 0 1 N N N N N N -28.570 -7.045  -24.301 2.774  -2.413 1.438  C19 ZX3 11 
ZX3 C2  C12 C 0 1 Y N N N N N -29.634 -5.247  -27.967 1.571  2.049  -0.479 C2  ZX3 12 
ZX3 C20 C13 C 0 1 N N N N N N -28.133 -8.151  -23.379 1.864  -3.623 1.235  C20 ZX3 13 
ZX3 C21 C14 C 0 1 N N N N N N -28.945 -7.375  -21.547 2.454  -3.751 -1.110 C21 ZX3 14 
ZX3 C22 C15 C 0 1 N N N N N N -29.406 -5.980  -22.174 3.386  -2.546 -0.981 C22 ZX3 15 
ZX3 C23 C16 C 0 1 N N N N N N -28.772 -9.526  -21.882 1.586  -5.696 0.027  C23 ZX3 16 
ZX3 C24 C17 C 0 1 N N N N N N -30.075 -10.364 -21.762 0.194  -5.295 -0.472 C24 ZX3 17 
ZX3 C25 C18 C 0 1 N N N N N N -30.670 -10.773 -24.059 -1.079 -3.282 -0.751 C25 ZX3 18 
ZX3 C26 C19 C 0 1 N N N N N N -30.777 -9.776  -25.248 -1.901 -2.346 0.137  C26 ZX3 19 
ZX3 C3  C20 C 0 1 Y N N N N N -29.480 -4.559  -25.770 3.308  0.721  0.227  C3  ZX3 20 
ZX3 C4  C21 C 0 1 Y N N N N N -28.986 -3.308  -26.188 4.026  1.843  0.629  C4  ZX3 21 
ZX3 C5  C22 C 0 1 N N N N N N -28.622 -2.222  -25.151 5.412  1.687  1.201  C5  ZX3 22 
ZX3 C6  C23 C 0 1 N N N N N N -29.235 -0.872  -25.561 6.440  1.750  0.070  C6  ZX3 23 
ZX3 C7  C24 C 0 1 N N N N N N -28.948 -3.700  -29.895 1.678  4.516  -0.134 C7  ZX3 24 
ZX3 C8  C25 C 0 1 Y N N N N N -29.812 -7.733  -28.789 -0.820 1.704  -0.823 C8  ZX3 25 
ZX3 C9  C26 C 0 1 Y N N N N N -29.092 -8.439  -29.748 -1.816 2.607  -0.439 C9  ZX3 26 
ZX3 N1  N1  N 0 1 Y N N N N N -29.798 -5.490  -26.669 2.099  0.836  -0.293 N1  ZX3 27 
ZX3 N2  N2  N 0 1 Y N N N N N -28.833 -3.060  -27.487 3.495  3.041  0.509  N2  ZX3 28 
ZX3 N3  N3  N 0 1 N N N N N N -29.668 -4.842  -24.325 3.934  -0.558 0.351  N3  ZX3 29 
ZX3 N4  N4  N 0 1 N N N N N N -28.889 -2.319  -30.373 2.355  5.598  0.299  N4  ZX3 30 
ZX3 N5  N5  N 0 1 N N N N N N -29.979 -6.269  -28.977 0.412  2.253  -1.192 N5  ZX3 31 
ZX3 N6  N6  N 0 1 N N N N N N -29.221 -11.999 -28.501 -4.649 0.322  0.105  N6  ZX3 32 
ZX3 N7  N7  N 0 1 N N N N N N -29.010 -8.358  -22.455 2.399  -4.474 0.163  N7  ZX3 33 
ZX3 O1  O1  O 0 1 N N N N N N -28.842 -4.590  -30.662 0.569  4.645  -0.616 O1  ZX3 34 
ZX3 O2  O2  O 0 1 N N N N N N -29.089 -14.463 -29.588 -7.329 0.585  0.904  O2  ZX3 35 
ZX3 O3  O3  O 0 1 N N N N N N -30.959 -10.079 -22.839 -0.135 -4.002 0.046  O3  ZX3 36 
ZX3 O4  O4  O 0 1 N N N N N N -30.771 -10.494 -26.470 -2.647 -1.440 -0.673 O4  ZX3 37 
ZX3 H1  H1  H 0 1 N N N N N N -28.343 -10.354 -30.370 -3.832 2.828  0.208  H1  ZX3 38 
ZX3 H2  H2  H 0 1 N N N N N N -30.946 -7.880  -26.968 -0.298 -0.343 -1.100 H2  ZX3 39 
ZX3 H3  H3  H 0 1 N N N N N N -30.566 -12.835 -27.110 -4.994 1.657  1.691  H3  ZX3 40 
ZX3 H4  H4  H 0 1 N N N N N N -31.203 -12.662 -28.780 -4.256 0.106  2.158  H4  ZX3 41 
ZX3 H5  H5  H 0 1 N N N N N N -30.848 -14.976 -28.682 -6.364 -1.072 1.677  H5  ZX3 42 
ZX3 H6  H6  H 0 1 N N N N N N -29.420 -14.820 -27.603 -6.662 0.250  2.832  H6  ZX3 43 
ZX3 H7  H7  H 0 1 N N N N N N -27.434 -14.586 -28.404 -7.777 0.836  -1.099 H7  ZX3 44 
ZX3 H8  H8  H 0 1 N N N N N N -27.154 -14.081 -30.105 -7.030 -0.722 -0.670 H8  ZX3 45 
ZX3 H9  H9  H 0 1 N N N N N N -27.239 -12.375 -27.896 -5.385 0.698  -1.829 H9  ZX3 46 
ZX3 H10 H10 H 0 1 N N N N N N -27.435 -11.876 -29.610 -5.656 2.006  -0.650 H10 ZX3 47 
ZX3 H11 H11 H 0 1 N N N N N N -27.802 -5.243  -23.428 1.974  -1.147 -0.127 H11 ZX3 48 
ZX3 H12 H12 H 0 1 N N N N N N -29.517 -7.337  -24.780 3.762  -2.752 1.752  H12 ZX3 49 
ZX3 H13 H13 H 0 1 N N N N N N -27.798 -6.901  -25.072 2.353  -1.768 2.209  H13 ZX3 50 
ZX3 H14 H14 H 0 1 N N N N N N -28.001 -9.074  -23.962 1.811  -4.196 2.161  H14 ZX3 51 
ZX3 H15 H15 H 0 1 N N N N N N -27.177 -7.873  -22.911 0.865  -3.283 0.963  H15 ZX3 52 
ZX3 H16 H16 H 0 1 N N N N N N -29.603 -7.623  -20.701 1.454  -3.408 -1.376 H16 ZX3 53 
ZX3 H17 H17 H 0 1 N N N N N N -27.908 -7.283  -21.191 2.828  -4.416 -1.888 H17 ZX3 54 
ZX3 H18 H18 H 0 1 N N N N N N -29.100 -5.169  -21.497 3.399  -1.995 -1.922 H18 ZX3 55 
ZX3 H19 H19 H 0 1 N N N N N N -30.501 -5.981  -22.274 4.395  -2.891 -0.752 H19 ZX3 56 
ZX3 H20 H20 H 0 1 N N N N N N -28.042 -10.082 -22.488 1.502  -6.191 0.994  H20 ZX3 57 
ZX3 H21 H21 H 0 1 N N N N N N -28.360 -9.356  -20.876 2.054  -6.370 -0.691 H21 ZX3 58 
ZX3 H22 H22 H 0 1 N N N N N N -30.574 -10.121 -20.812 0.193  -5.262 -1.561 H22 ZX3 59 
ZX3 H23 H23 H 0 1 N N N N N N -29.819 -11.434 -21.779 -0.540 -6.024 -0.129 H23 ZX3 60 
ZX3 H24 H24 H 0 1 N N N N N N -31.392 -11.591 -24.198 -1.745 -3.986 -1.250 H24 ZX3 61 
ZX3 H25 H25 H 0 1 N N N N N N -29.652 -11.187 -24.015 -0.547 -2.694 -1.500 H25 ZX3 62 
ZX3 H26 H26 H 0 1 N N N N N N -29.922 -9.085  -25.225 -2.585 -2.935 0.747  H26 ZX3 63 
ZX3 H27 H27 H 0 1 N N N N N N -31.713 -9.204  -25.164 -1.231 -1.782 0.786  H27 ZX3 64 
ZX3 H28 H28 H 0 1 N N N N N N -29.013 -2.515  -24.165 5.604  2.490  1.912  H28 ZX3 65 
ZX3 H29 H29 H 0 1 N N N N N N -27.528 -2.123  -25.097 5.489  0.725  1.709  H29 ZX3 66 
ZX3 H30 H30 H 0 1 N N N N N N -28.970 -0.107  -24.816 6.364  2.711  -0.438 H30 ZX3 67 
ZX3 H31 H31 H 0 1 N N N N N N -28.844 -0.576  -26.546 7.443  1.637  0.484  H31 ZX3 68 
ZX3 H32 H32 H 0 1 N N N N N N -30.330 -0.968  -25.614 6.248  0.947  -0.641 H32 ZX3 69 
ZX3 H33 H33 H 0 1 N N N N N N -28.669 -7.917  -30.593 -1.604 3.666  -0.398 H33 ZX3 70 
ZX3 H34 H34 H 0 1 N N N N N N -29.633 -3.956  -23.863 4.872  -0.710 0.543  H34 ZX3 71 
ZX3 H35 H35 H 0 1 N N N N N N -28.759 -2.132  -31.347 3.239  5.495  0.684  H35 ZX3 72 
ZX3 H36 H36 H 0 1 N N N N N N -28.978 -1.562  -29.726 1.957  6.480  0.227  H36 ZX3 73 
ZX3 H37 H37 H 0 1 N N N N N N -30.352 -5.952  -29.849 0.451  2.804  -1.990 H37 ZX3 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZX3 O1  C7  DOUB N N 1  
ZX3 N4  C7  SING N N 2  
ZX3 C7  C1  SING N N 3  
ZX3 C9  C10 DOUB Y N 4  
ZX3 C9  C8  SING Y N 5  
ZX3 C10 C11 SING Y N 6  
ZX3 O2  C16 SING N N 7  
ZX3 O2  C15 SING N N 8  
ZX3 C16 C17 SING N N 9  
ZX3 N5  C8  SING N N 10 
ZX3 N5  C2  SING N N 11 
ZX3 C17 N6  SING N N 12 
ZX3 C8  C13 DOUB Y N 13 
ZX3 C11 N6  SING N N 14 
ZX3 C11 C12 DOUB Y N 15 
ZX3 N6  C14 SING N N 16 
ZX3 C15 C14 SING N N 17 
ZX3 C1  C2  DOUB Y N 18 
ZX3 C1  N2  SING Y N 19 
ZX3 C2  N1  SING Y N 20 
ZX3 C13 C12 SING Y N 21 
ZX3 C12 O4  SING N N 22 
ZX3 N2  C4  DOUB Y N 23 
ZX3 N1  C3  DOUB Y N 24 
ZX3 O4  C26 SING N N 25 
ZX3 C4  C3  SING Y N 26 
ZX3 C4  C5  SING N N 27 
ZX3 C3  N3  SING N N 28 
ZX3 C6  C5  SING N N 29 
ZX3 C26 C25 SING N N 30 
ZX3 N3  C18 SING N N 31 
ZX3 C19 C18 SING N N 32 
ZX3 C19 C20 SING N N 33 
ZX3 C25 O3  SING N N 34 
ZX3 C18 C22 SING N N 35 
ZX3 C20 N7  SING N N 36 
ZX3 O3  C24 SING N N 37 
ZX3 N7  C23 SING N N 38 
ZX3 N7  C21 SING N N 39 
ZX3 C22 C21 SING N N 40 
ZX3 C23 C24 SING N N 41 
ZX3 C10 H1  SING N N 42 
ZX3 C13 H2  SING N N 43 
ZX3 C14 H3  SING N N 44 
ZX3 C14 H4  SING N N 45 
ZX3 C15 H5  SING N N 46 
ZX3 C15 H6  SING N N 47 
ZX3 C16 H7  SING N N 48 
ZX3 C16 H8  SING N N 49 
ZX3 C17 H9  SING N N 50 
ZX3 C17 H10 SING N N 51 
ZX3 C18 H11 SING N N 52 
ZX3 C19 H12 SING N N 53 
ZX3 C19 H13 SING N N 54 
ZX3 C20 H14 SING N N 55 
ZX3 C20 H15 SING N N 56 
ZX3 C21 H16 SING N N 57 
ZX3 C21 H17 SING N N 58 
ZX3 C22 H18 SING N N 59 
ZX3 C22 H19 SING N N 60 
ZX3 C23 H20 SING N N 61 
ZX3 C23 H21 SING N N 62 
ZX3 C24 H22 SING N N 63 
ZX3 C24 H23 SING N N 64 
ZX3 C25 H24 SING N N 65 
ZX3 C25 H25 SING N N 66 
ZX3 C26 H26 SING N N 67 
ZX3 C26 H27 SING N N 68 
ZX3 C5  H28 SING N N 69 
ZX3 C5  H29 SING N N 70 
ZX3 C6  H30 SING N N 71 
ZX3 C6  H31 SING N N 72 
ZX3 C6  H32 SING N N 73 
ZX3 C9  H33 SING N N 74 
ZX3 N3  H34 SING N N 75 
ZX3 N4  H35 SING N N 76 
ZX3 N4  H36 SING N N 77 
ZX3 N5  H37 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZX3 InChI            InChI                1.06  "InChI=1S/C26H37N7O4/c1-2-20-25-28-18-5-7-32(8-6-18)9-12-36-15-16-37-22-17-19(29-26(31-25)23(30-20)24(27)34)3-4-21(22)33-10-13-35-14-11-33/h3-4,17-18H,2,5-16H2,1H3,(H2,27,34)(H2,28,29,31)" 
ZX3 InChIKey         InChI                1.06  LXUHFRDECMQRJE-UHFFFAOYSA-N                                                                                                                                                                  
ZX3 SMILES_CANONICAL CACTVS               3.385 "CCc1nc(C(N)=O)c2Nc3ccc(N4CCOCC4)c(OCCOCCN5CCC(CC5)Nc1n2)c3"                                                                                                                                 
ZX3 SMILES           CACTVS               3.385 "CCc1nc(C(N)=O)c2Nc3ccc(N4CCOCC4)c(OCCOCCN5CCC(CC5)Nc1n2)c3"                                                                                                                                 
ZX3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c2nc(c(n1)C(=O)N)Nc3ccc(c(c3)OCCOCCN4CCC(N2)CC4)N5CCOCC5"                                                                                                                               
ZX3 SMILES           "OpenEye OEToolkits" 2.0.7 "CCc1c2nc(c(n1)C(=O)N)Nc3ccc(c(c3)OCCOCCN4CCC(N2)CC4)N5CCOCC5"                                                                                                                               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZX3 "Create component" 2023-12-13 PDBJ 
ZX3 "Initial release"  2024-12-11 RCSB 
# 
